BAC Information

Click to search

BAC

Clone NameB6Ng01-201C11
Chromosome6 (Build37)
Map Location 142,626,729 - 142,774,208
singlet/doubletdoublet
Overlap geneAbcc9, Cmas, Gm766, EG665037, St8sia1
Upstream geneSlco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, 5330439B14Rik
Downstream geneLOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201C11.bB6Ng01-201C11.g
ACCGA022009GA022010
length1,1641,157
definitionB6Ng01-201C11.b B6Ng01-201C11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,626,729 - 142,627,889)(142,773,073 - 142,774,208)
sequence
gaattccaggacagccagagctacacagtgagaccttgtctcaaaacaaa
agtcccaagggcttagcacctgtgattctcacagtgagaaacaaaaacag
tcaagtctcaagttttcattctaccttttcaagctgctcttctgcagcca
ctacggaaaccagtgtaggagttcttcaaaaaaactcaagctatagctat
cacaggatccaactataccatccctgaatacacacccaaatgactccacc
tgaccacatcacagagacacttgcacattataccaatacaacatcaatca
cagtaggtgagttttccaccagcagcggtatggatgaaaaagtgtgtgga
gatacaccatagatgtcattccaccaagaggaagaacaaaattacattcc
tggcaggaccatgggtacaactggagattttcatattaagtcaattagat
cagacccaaagtgacaaatgttatgatttctgtcatctgtgagtcctaga
ttttacagagatgcgtaaaattcatccatgtgtatgcatggcatgaaatt
agatgtgaggctgtacagacggacgaaggggttgatgggagaggaagaag
gatgcacgggtgatactgacacacgtctttaaatctttaaagtcacaata
cctgagtgaactttactatgtagggtgatcagccaccagactaaaagtac
acttgcagtaataaagtacacattcactgagcaagaatataaatgaggcc
aggaacgatagcactttcatcccagcattcaggaggcagaggcaggcaga
gctctgtcaatttgggccagcctgatctacaaagccagtttcaggccagc
caggcttaaaggttgcaggtttggaggcaggggaataaatgaaatgctat
gatttcgaattgatccggattgagatggattggcctcttgtattataaag
tgtacaaatcaagccaagcggctcggttccctaacagggttcccaaagga
tgcgactaccagagtgctccttctgagcctccggcagctcgtgcaatgaa
gtactgaatcgtgtgcagagcacaattgactgcagcgccatccagtgcac
tccgaccaagcaaattgtatgagcaggattcacccccatttatgaatcta
agaagggaggaggg
gaattctctttttgagtcaaccgcgacttaagaatttgttgattctcaag
ctcccaagtgagggcggctgctgcttgattttaatcacacttcagtaaaa
attaagctaggtgaagagcgagtcatcccagcagaaggaaagcttttaca
tgagagagcttttctcagaagatgactcttagtgctttgccaaagtatat
ttttaaaaaattgtgtgcctaaaccagattgttcacgtttatgactttga
aaaaggagggggcacgggagactctcacccttgaggcctgaatgcccttg
cagggtcctgagttcaggttctgatgcacacttacccacacacagctaac
tgttactccaggtccaggacagctggtgtcctcctctggtctccatggac
actgaatgcaagcaagaacatacacataataaataaatgaatgaataaat
aaataaatcttaataaaggtagagagttaattctctaaaatggcagatgt
tcaggtagtgtcctttgtgcttcttcgctgggaagccagacatctatagt
tttatttttttcatgtttgaaaataccaagttcatagactcttccactgg
caaatcattgtcaggaaagatctaatgagaaaatcagtcacgagtccact
gaatggtttttaccttataaaatacagtgctgtggtatagatgcttcccc
aatggtttttaccttatgaaatacagtgttgtggtatagacgcttccccg
ccagaaccaggtaagattacttctcatcaaaaagcccagagatcaagggc
tgtaaagctttgtctgaactctcaagggcaagtctgcagtaacaagactg
aggatgctgttgtgtgttttttcctgctcagagtagtcagaatgtgagct
ccaggcagcccacatcaggggtggaagcaaatttaacaatgtttgacacc
ctgcagcccaagtttgatgtggcttattcggttcagcagtaaattccttc
ttagaaggttttgggaaactttgaattctggttgtaatgcctcaaggaga
ggacgaggccaaggtgacaagggaggtgaccatagtttccaagctttctc
cacgcattcaccggggacgaaggggtctattacccttttgttcctgatga
ccctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142626729_142627889
seq2: B6Ng01-201C11.b_51_1214

seq1  GAATTCCAGGACAGCCAGAGCTACACAGTGAGACCTTGTCTCAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGAGCTACACAGTGAGACCTTGTCTCAAAACAAA  50

seq1  AGTCCCAAGGGCTTAGCACCTGTGATTCTCACAGTGAGAAACAAAAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCAAGGGCTTAGCACCTGTGATTCTCACAGTGAGAAACAAAAACAG  100

seq1  TCAAGTCTCAAGTTTTCATTCTACCTTTTCAAGCTGCTCTTCTGCAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTCAAGTTTTCATTCTACCTTTTCAAGCTGCTCTTCTGCAGCCA  150

seq1  CTACGGAAACCAGTGTAGGAGTTCTTCAAAAAAACTCAAGCTATAGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGGAAACCAGTGTAGGAGTTCTTCAAAAAAACTCAAGCTATAGCTAT  200

seq1  CACAGGATCCAACTATACCATCCCTGAATACACACCCAAATGACTCCACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATCCAACTATACCATCCCTGAATACACACCCAAATGACTCCACC  250

seq1  TGACCACATCACAGAGACACTTGCACATTATACCAATACAACATCAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATCACAGAGACACTTGCACATTATACCAATACAACATCAATCA  300

seq1  CAGTAGGTGAGTTTTCCACCAGCAGCGGTATGGATGAAAAAGTGTGTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTGAGTTTTCCACCAGCAGCGGTATGGATGAAAAAGTGTGTGGA  350

seq1  GATACACCATAGATGTCATTCCACCAAGAGGAAGAACAAAATTACATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACCATAGATGTCATTCCACCAAGAGGAAGAACAAAATTACATTCC  400

seq1  TGGCAGGACCATGGGTACAACTGGAGATTTTCATATTAAGTCAATTAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGACCATGGGTACAACTGGAGATTTTCATATTAAGTCAATTAGAT  450

seq1  CAGACCCAAAGTGACAAATGTTATGATTTCTGTCATCTGTGAGTCCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCCAAAGTGACAAATGTTATGATTTCTGTCATCTGTGAGTCCTAGA  500

seq1  TTTTACAGAGATGCGTAAAATTCATCCATGTGTATGCATGGCATGAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACAGAGATGCGTAAAATTCATCCATGTGTATGCATGGCATGAAATT  550

seq1  AGATGTGAGGCTGTACAGACGGACGAAGGGGTTGATGGGAGAGGAAGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGAGGCTGTACAGACGGACGAAGGGGTTGATGGGAGAGGAAGAAG  600

seq1  GATGCACGGGTGATACTGACACACGTCTTTAAATCTTTAAAGTCACAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACGGGTGATACTGACACACGTCTTTAAATCTTTAAAGTCACAATA  650

seq1  CCTGAGTGAACTTTACTATGTAGGGTGATCAGCCACCAGACTAAAAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTGAACTTTACTATGTAGGGTGATCAGCCACCAGACTAAAAGTAC  700

seq1  ACTTGCAGTAATAAAGTACACATTCACTGAGCAAGAATATAAATGAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCAGTAATAAAGTACACATTCACTGAGCAAGAATATAAATGAGGCC  750

seq1  AGGAACGATAGCACTTTCATCCCAGCATTCAGGAGGCAGAGGCAGGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGATAGCACTTTCATCCCAGCATTCAGGAGGCAGAGGCAGGCAGA  800

seq1  GCTCTGTCAATTTGGGCCAGCCTGATCTACAAAGCCAGTTTCAGGCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTCAATTTGGGCCAGCCTGATCTACAAAGCCAGTTTCAGGCCAGC  850

seq1  CAGGCTTAAAGGTTGCAGGTTTGGAGGCAGGGGAATAAATGAAATGCTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTAAAGGTTGCAGGTTTGGAGGCAGGGGAATAAATGAAATGCTAT  900

seq1  GATTTCGAATTGATCCGGATTGAGATGGATTGGCCTCTTGTATTATAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GATTTCGAATTGATCCGGATTGAGATGGATTGGCCTCTTGTATTAT-AAA  949

seq1  GTGTACAAATCAAGCCAAGCGGCTCGGTTCCCTAACAGGGTTCCC-AAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GTGTACAAATCAAGCCAAGCGGCTCGGTTCCCTAACAGGGTTCCCAAAGG  999

seq1  ATGCGACTTACCAGAGTGCT-CTTCTGAGCCTCCGCCAGCTTCGTGGCAA  1048
      ||||||| |||||||||||| |||||||||||||| |||| |||| ||||
seq2  ATGCGAC-TACCAGAGTGCTCCTTCTGAGCCTCCGGCAGC-TCGT-GCAA  1046

seq1  TGAAGTACTGAATCG-GTGCAAGGAGCACAA-TGACTGCAGCGCCAACCA  1096
      ||||||||||||||| |||||  |||||||| |||||||||||||| |||
seq2  TGAAGTACTGAATCGTGTGCA--GAGCACAATTGACTGCAGCGCCATCCA  1094

seq1  GTGCACTCGACCCAAGCAAATTGTA-GAGCAGGA-TCACCCCCA-TTATG  1143
      ||||||||   |||||||||||||| |||||||| ||||||||| |||||
seq2  GTGCACTCCGACCAAGCAAATTGTATGAGCAGGATTCACCCCCATTTATG  1144

seq1  -ATCT-AGGAGGGAGGAGGG  1161
       |||| || |||||||||||
seq2  AATCTAAGAAGGGAGGAGGG  1164

seq1: chr6_142773073_142774208
seq2: B6Ng01-201C11.g_64_1220 (reverse)

seq1  AAGAGGGTCATCAAGAACAAA--GGT-ATAGACCCCTCTGTCCCC-GTGG  46
      ||||||||||||| |||||||  ||| ||||||||||  |||||| ||| 
seq2  AAGAGGGTCATCAGGAACAAAAGGGTAATAGACCCCTTCGTCCCCGGTGA  50

seq1  ATGC----TGAGAGCTTGGGAACTATGGTCACCTCCCTTGTCACCTT-GC  91
      ||||     || ||||||| ||||||||||||||||||||||||||| ||
seq2  ATGCGTGGAGAAAGCTTGGAAACTATGGTCACCTCCCTTGTCACCTTGGC  100

seq1  CTCTTCCTCTCC-TGA-GCA-TACAA-CAGAAT--CAAGTTTCC--AAAA  133
      ||| |||||||| ||| ||| ||||| ||||||   ||||||||  ||| 
seq2  CTCGTCCTCTCCTTGAGGCATTACAACCAGAATTCAAAGTTTCCCAAAAC  150

seq1  CTTCTAAGA--GGATTTACTGCTGACCCG-ATTAGCCACATC-AACCTGG  179
      |||||||||  | |||||||||||| ||| || ||||||||| ||| |||
seq2  CTTCTAAGAAGGAATTTACTGCTGAACCGAATAAGCCACATCAAACTTGG  200

seq1  GCTGCA-GGTGTCAAACATTGTT-AATTTGCTTCCACCCCTGATGTGGGC  227
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GCTGCAGGGTGTCAAACATTGTTAAATTTGCTTCCACCCCTGATGTGGGC  250

seq1  TGCCTGGAGCTCACATTTCTGACTACTCTGGGCAGGAAAAAACACACAAC  277
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TGCCTGGAGCTCACA-TTCTGACTACTCTGAGCAGGAAAAAACACACAAC  299

seq1  AGCATCCTCAGTCTTTGTTACTGCAGACTTGCCCTTGAGAGTTCAGACAA  327
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTCAGTC-TTGTTACTGCAGACTTGCCCTTGAGAGTTCAGACAA  348

seq1  AGCTTTACAGCCCTTGATCTCTGGGCTTTTTGATGAGAAGTAATCTTACC  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACAGCCCTTGATCTCTGGGCTTTTTGATGAGAAGTAATCTTACC  398

seq1  TGGTTCTGGCGGGGAAGCGTCTATACCACAACACTGTATTTCATAAGGTA  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGGCGGGGAAGCGTCTATACCACAACACTGTATTTCATAAGGTA  448

seq1  AAAACCATTGGGGAAGCATCTATACCACAGCACTGTATTTTATAAGGTAA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCATTGGGGAAGCATCTATACCACAGCACTGTATTTTATAAGGTAA  498

seq1  AAACCATTCAGTGGACTCGTGACTGATTTTCTCATTAGATCTTTCCTGAC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCAGTGGACTCGTGACTGATTTTCTCATTAGATCTTTCCTGAC  548

seq1  AATGATTTGCCAGTGGAAGAGTCTATGAACTTGGTATTTTCAAACATGAA  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTGCCAGTGGAAGAGTCTATGAACTTGGTATTTTCAAACATGAA  598

seq1  AAAAATAAAACTATAGATGTCTGGCTTCCCAGCGAAGAAGCACAAAGGAC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAACTATAGATGTCTGGCTTCCCAGCGAAGAAGCACAAAGGAC  648

seq1  ACTACCTGAACATCTGCCATTTTAGAGAATTAACTCTCTACCTTTATTAA  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACCTGAACATCTGCCATTTTAGAGAATTAACTCTCTACCTTTATTAA  698

seq1  GATTTATTTATTTATTCATTCATTTATTTATTATGTGTATGTTCTTGCTT  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATTTATTTATTCATTCATTTATTTATTATGTGTATGTTCTTGCTT  748

seq1  GCATTCAGTGTCCATGGAGACCAGAGGAGGACACCAGCTGTCCTGGACCT  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAGTGTCCATGGAGACCAGAGGAGGACACCAGCTGTCCTGGACCT  798

seq1  GGAGTAACAGTTAGCTGTGTGTGGGTAAGTGTGCATCAGAACCTGAACTC  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAACAGTTAGCTGTGTGTGGGTAAGTGTGCATCAGAACCTGAACTC  848

seq1  AGGACCCTGCAAGGGCATTCAGGCCTCAAGGGTGAGAGTCTCCCGTGCCC  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCCTGCAAGGGCATTCAGGCCTCAAGGGTGAGAGTCTCCCGTGCCC  898

seq1  CCTCCTTTTTCAAAGTCATAAACGTGAACAATCTGGTTTAGGCACACAAT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTTTTCAAAGTCATAAACGTGAACAATCTGGTTTAGGCACACAAT  948

seq1  TTTTTAAAAATATACTTTGGCAAAGCACTAAGAGTCATCTTCTGAGAAAA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAAAATATACTTTGGCAAAGCACTAAGAGTCATCTTCTGAGAAAA  998

seq1  GCTCTCTCATGTAAAAGCTTTCCTTCTGCTGGGATGACTCGCTCTTCACC  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCATGTAAAAGCTTTCCTTCTGCTGGGATGACTCGCTCTTCACC  1048

seq1  TAGCTTAATTTTTACTGAAGTGTGATTAAAATCAAGCAGCAGCCGCCCTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTAATTTTTACTGAAGTGTGATTAAAATCAAGCAGCAGCCGCCCTC  1098

seq1  ACTTGGGAGCTTGAGAATCAACAAATTCTTAAGTCGCGGTTGACTCAAAA  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGCTTGAGAATCAACAAATTCTTAAGTCGCGGTTGACTCAAAA  1148

seq1  AGAGAATTC  1136
      |||||||||
seq2  AGAGAATTC  1157