BAC Information

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BAC

Clone NameB6Ng01-202B01
Chromosome6 (Build37)
Map Location 107,017,177 - 107,018,302
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn4, Il5ra, Trnt1, Crbn
Downstream genePpia-ps6_1128.1, Lrrn1, Setmar
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202B01.bB6Ng01-202B01.g
ACCGA022661GA022662
length1,134413
definitionB6Ng01-202B01.b B6Ng01-202B01.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattattttcctaccatttcctatatattactgctgatcccttag
cacgagaggaacatctgtctcctttgcagaaaacttaattaaagcatatt
ttttaatcaagtggacagattcataactgaagaactgtttcccccatttg
ccaataaagctgtgcccacccaccaaacttcagaaggagtcgggttgttt
tgatttactgtgtctaccaatgttgctcactgggttcactcaacaggcct
ttttatttagccttgattaaagaactaagctggtgagacaaacatgctac
agaaagggtatgactttatttaaacctatcactttgctagcttgtgctcc
tacttatggtattacttgattggatgctcaaagaaaaataaacaatctaa
aatagacatacacacacacacacacacacacagagagagagagagagaga
gagagagagagagagagagagagagagagagagagagagagagaaaagct
ttctagatgctagatgctcagatggcagcctcctgcagggaacaatactc
agatggatacagcgacagagaataaattgtaaatgcttttcatgagagtc
aaatgtttctgtgtggggcaaatcaaacaataaagctgtttcttttttat
tattattaaattttattttttaaattattcactttacatcccactcactg
ccccctgcctggtcaccccatcccacaattattctcccattcttccttct
cttctctgagtgggtgggtcttccctgattatcttccaattctgacactt
cttgtctctgagaggctaggcactccctctcccactgatgccagagaagg
cagctcagataaaggaacatagcccaaatacagggcaataacctttggaa
tagcccctgccccagatgtttgggacccacataaagggccaagctgcaca
tctgctacatatgtgtgggaaggcctaggctccacctgtgtatggtcttt
ggttggtggttcagactctggaggagccccaaggagtctaaggttagttg
acaccgtagtccttcctgtgggagtctatccccatagaaggctcagtcct
ttcctccatatcctttcatagtggtcccttaaag

tgagagtgagaacagtctttcccagggaagactgcatagcaactgatcat
ctaataccagttgatcagccctgaaaacatatatacacgtaatatacacg
taatattatacagactgaggaggttttttaggaatatatatgcatataca
catatatttatatgcatgtaataatactcaatggaaaaggagccatgaat
ctgataggagggatatatgtgaaggtttgaagggaagaatgagaagggaa
aatgatgtagttatattttagtgtcaaaaatacataagcaataattacaa
atacgtttcatcatctagttgaagtaggcataataataaaatgttctttc
ctatttatgtgataaaacattgtggacaacctaaaatagggaggttaatt
taggcttctggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107017177_107018302
seq2: B6Ng01-202B01.b_48_1181

seq1  GAATTCATTATTTTCCTACCATTTCCTATATATTACTGCTGATCCCTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTTCCTACCATTTCCTATATATTACTGCTGATCCCTTAG  50

seq1  CACGAGAGGAACATCTGTCTCCTTTGCAGAAAACTTAATTAAAGCATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGAGGAACATCTGTCTCCTTTGCAGAAAACTTAATTAAAGCATATT  100

seq1  TTTTAATCAAGTGGACAGATTCATAACTGAAGAACTGTTTCCCCCATTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATCAAGTGGACAGATTCATAACTGAAGAACTGTTTCCCCCATTTG  150

seq1  CCAATAAAGCTGTGCCCACCCACCAAACTTCAGAAGGAGTCGGGTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAAGCTGTGCCCACCCACCAAACTTCAGAAGGAGTCGGGTTGTTT  200

seq1  TGATTTACTGTGTCTACCAATGTTGCTCACTGGGTTCACTCAACAGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACTGTGTCTACCAATGTTGCTCACTGGGTTCACTCAACAGGCCT  250

seq1  TTTTATTTAGCCTTGATTAAAGAACTAAGCTGGTGAGACAAACATGCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTAGCCTTGATTAAAGAACTAAGCTGGTGAGACAAACATGCTAC  300

seq1  AGAAAGGGTATGACTTTATTTAAACCTATCACTTTGCTAGCTTGTGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGTATGACTTTATTTAAACCTATCACTTTGCTAGCTTGTGCTCC  350

seq1  TACTTATGGTATTACTTGATTGGATGCTCAAAGAAAAATAAACAATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATGGTATTACTTGATTGGATGCTCAAAGAAAAATAAACAATCTAA  400

seq1  AATAGACATACACACACACACACACACACACAGAGAGAGAGAGAGAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACATACACACACACACACACACACACAGAGAGAGAGAGAGAGAGA  450

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAAGCT  500

seq1  TTCTAGATGCTAGATGCTCAGATGGCAGCCTCCTGCAGGGAACAATACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGATGCTAGATGCTCAGATGGCAGCCTCCTGCAGGGAACAATACTC  550

seq1  AGATGGATACAGCGACAGAGAATAAATTGTAAATGCTTTTCATGAGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATACAGCGACAGAGAATAAATTGTAAATGCTTTTCATGAGAGTC  600

seq1  AAATGTTTCTGTGTGGGGCAAATCAAACAATAAAGCTGTTTCTTTTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTCTGTGTGGGGCAAATCAAACAATAAAGCTGTTTCTTTTTTAT  650

seq1  TATTATTAAATTTTATTTTTTAAATTATTCACTTTACATCCCACTCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTAAATTTTATTTTTTAAATTATTCACTTTACATCCCACTCACTG  700

seq1  CCCCCTGCCTGGTCACCCCATCCCACAATTATTCTCCCATTCTTCCTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCTGGTCACCCCATCCCACAATTATTCTCCCATTCTTCCTTCT  750

seq1  CTTCTCTGAGTGGGTGGGTCTTCCCTGATTATCTTCCAATTCTGACACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGAGTGGGTGGGTCTTCCCTGATTATCTTCCAATTCTGACACTT  800

seq1  CTTGTCTCTGAGAGGCTAGGCACTCCCTCTCCCACTGATGCCAGAGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTCTGAGAGGCTAGGCACTCCCTCTCCCACTGATGCCAGAGAAGG  850

seq1  CAGCTCAGATAAAGGAACATAGCCCAAATACA-GGCAATAACCTTTGGAA  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGCTCAGATAAAGGAACATAGCCCAAATACAGGGCAATAACCTTTGGAA  900

seq1  TAGCCCCTGCCCCAGATGTTTGGGACCCACATAAA-GGCCAAGCTGCACA  948
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAGCCCCTGCCCCAGATGTTTGGGACCCACATAAAGGGCCAAGCTGCACA  950

seq1  TCTGCTACATATGTGTGGGAAGGCCTAGGCTCAACCTGTGTATGTTCTTT  998
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TCTGCTACATATGTGTGGGAAGGCCTAGGCTCCACCTGTGTATGGTCTTT  1000

seq1  GGTTGGTGGTTCAGACTCTG--AGAGCCCCAA-GAGTCT-AGGTTAGTTG  1044
      ||||||||||||||||||||   ||||||||| |||||| ||||||||||
seq2  GGTTGGTGGTTCAGACTCTGGAGGAGCCCCAAGGAGTCTAAGGTTAGTTG  1050

seq1  ACACCGTTAGT-CTTCCTGTGGAGTTCTTATCCCCATAGAGGCTTCAATC  1093
      |||||| |||| ||||||||||   || |||||||||||| |  ||| ||
seq2  ACACCG-TAGTCCTTCCTGTGGGAGTC-TATCCCCATAGAAGGCTCAGTC  1098

seq1  C-TTCCTCC-TGTTCTTTCATAAGTGTCCC-TAAAG  1126
      | ||||||| | | ||||||||   ||||| |||||
seq2  CTTTCCTCCATATCCTTTCATAGTGGTCCCTTAAAG  1134


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