BAC Information

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BAC

Clone NameB6Ng01-202C21
Chromosome6 (Build37)
Map Location 24,617,816 - 24,618,961
singlet/doubletsinglet
Overlap genenone
Upstream geneCadps2, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715, Lmod2, Wasl
Downstream gene4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358, Gpr37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202C21.bB6Ng01-202C21.g
ACCGA022746GA022747
length1,1221,140
definitionB6Ng01-202C21.b B6Ng01-202C21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaatctcaaatggtggagaagcaactaaagaaatg
tccaacatccttagtcatcagggaaatgcaaatcaaaacaatcctaagat
tccacctcacaccactcagaatggctaagatcaaaaacctcaaaagacag
ctggcgaggatgtgggaagaggaacactccttcattgctggtgggattgg
aaactggaaaaaccactgtggaactcaatctggttgttctttagaaaatt
ggaaatagttctacctgaagaccccactgtacccctcctggatatataca
tgaaagatcacaaggacacatgctccactatattcatagcagcattattt
gtaatagccagaagctggaaataaccttcatgtctctcaacctaagaata
gatacagaaaatatggttcatttacacaatggagtactcctcagctatta
aaaacaaagacatcatgaattttacaggcaaattggatagaactagaaaa
tatgagtgaggtaacctagactgaaaggacacacatggtatgtacacact
gataagtgaatattagccaaaaacttcaaaatacccatgatacaactcac
accatatgaagcttacttaacaagaaagaacaaaataatgtttggaggtg
gatgaaaggaaagacctggtcgggaatggggatggggaagaaaaaatggg
ggcagaatcaggtacagggggaagcaggagagaattctagagggccagaa
atataaatcgaaatatgcagcagtatgtcattggctggggacacctctag
agtctcagacaccaatgatgtaagaggctcccaggacccaatggggatga
cctttagcctaaataccacacagtggggagatggaacctaaagagaccac
cttcagtagatagacatggccccatttgagacatggggccacccacccat
cttcaaaattttgacccagaattgttcctatctaaaggaaatgaaaggga
caaaaatggagcagagactgaaaggaaagggacagtcagtgactgccaac
ttggggattcatcccatgcattaggcaccaaatcccaacattattactcg
gattggccacatggttgtggct
gaattcaatttcccactaaaatcaatgaggagtgtgaatgggttgcagat
aacctatcaactctttacacagaacccagaaaacgacttgtacttaaaat
gaatggaaacaggagaaaagaagtttgtcagctttatttttgataacaaa
taaaacactccacatttaactagaaaaatatttactagaacaaatcctca
agttcccaatttacacagtgcttacataaaaatgtgcacatattttataa
tgtggacagtttacacccatgaaacttagatgctgcagtgaaagaagcgg
tattcatccctgcagcatccagaacctcttgctttgtctctataaatcag
ttctcccacagctgggcatcatcagtaccagcaattttggctccaatggc
tgactgccatggaactctgtgtgatgctattaccaattctcccatagaga
agggtgtcactatattttaatttactaacattaaccagggaagtaataca
tttcagaggacctgtacatccacaatgacaactgtaaagaaataaaatgg
gaagtgtggtcatggtagtatgggtgacacctgaaaatatcccctcactt
ccataaatacgttactataaggttttctgtcaaaatgaagcactcacctt
aaagaataatagcaaagaaagcagtggaaaataaatgtctaggagagagt
ttagtatagggaaaggaaaccacatgagaagtgaaatctaagacttactt
ttgtatttgttctatctctagacttttaatacagcagctgtactttagat
gaagataaaaaaaacccctacctgttttagcctagtgaacttcaaaacat
ccagctgaaggagactcaaatgcttatttcctggactatatccaatctct
caaactgggcaaaagaatttgagataagaaaaggacttgccaaagaaaac
agtgaatgctgtctgtgctctgcaggaggagttatgctatcaagaattaa
aagtcagggggactgggctaggctttcttgaaacaatattgctaagcttc
ttgatacaggatgaatgataagcagatcttcgtgttacaatagagaggaa
ctccccaacactttggttcttccagcgttcattgcataag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_24617816_24618961
seq2: B6Ng01-202C21.g_64_1203 (reverse)

seq1  CTTATGCATTTGAACGCGTGAAGAA-CAAAGTGTTGGGGAAGTTCCTCTC  49
      ||||||||  |||||||  |||||| ||||||||||||| ||||||||||
seq2  CTTATGCA-ATGAACGCTGGAAGAACCAAAGTGTTGGGG-AGTTCCTCTC  48

seq1  TATTGT-ACACGAAGGATTCTGCTTTATTCATTCATCCTGGTATCAAGAA  98
      |||||| ||||||||   |||||||   ||||||||||| ||||||||||
seq2  TATTGTAACACGAAG--ATCTGCTT--ATCATTCATCCT-GTATCAAGAA  93

seq1  GGCTTAGCAATATTTGTTTCAAG-AAGCCTAG-CCAGTCCCCCTGACTTT  146
       ||||||||||| |||||||||| |||||||| |||||||||||||||||
seq2  -GCTTAGCAATA-TTGTTTCAAGAAAGCCTAGCCCAGTCCCCCTGACTTT  141

seq1  T-ATTCTTGATAGCATAACTCCTCCTGCAGAGCACAAGACAGCATTCACT  195
      | ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAATTCTTGATAGCATAACTCCTCCTGCAGAGCAC-AGACAGCATTCACT  190

seq1  GTTTTCTTTGGCAAGTCCTTTTCTTATCTCAAATTCTTTTTGCCCAGTTT  245
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTTTTCTTTGGCAAGTCCTTTTCTTATCTCAAATTC-TTTTGCCCAGTTT  239

seq1  GAGAGATTGGATATAGTCCAGGAAATAAGCATTTGAGTCTCCTTCAGCTG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTGGATATAGTCCAGGAAATAAGCATTTGAGTCTCCTTCAGCTG  289

seq1  GATGTTTTGAAGTTCACTAGGCTAAAACAGGTAGGGGTTTTTTTTATCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTTGAAGTTCACTAGGCTAAAACAGGTAGGGGTTTTTTTTATCTT  339

seq1  CATCTAAAGTACAGCTGCTGTATTAAAAGTCTAGAGATAGAACAAATACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAAAGTACAGCTGCTGTATTAAAAGTCTAGAGATAGAACAAATACA  389

seq1  AAAGTAAGTCTTAGATTTCACTTCTCATGTGGTTTCCTTTCCCTATACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAGTCTTAGATTTCACTTCTCATGTGGTTTCCTTTCCCTATACTA  439

seq1  AACTCTCTCCTAGACATTTATTTTCCACTGCTTTCTTTGCTATTATTCTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCTCCTAGACATTTATTTTCCACTGCTTTCTTTGCTATTATTCTT  489

seq1  TAAGGTGAGTGCTTCATTTTGACAGAAAACCTTATAGTAACGTATTTATG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGAGTGCTTCATTTTGACAGAAAACCTTATAGTAACGTATTTATG  539

seq1  GAAGTGAGGGGATATTTTCAGGTGTCACCCATACTACCATGACCACACTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGGGGATATTTTCAGGTGTCACCCATACTACCATGACCACACTT  589

seq1  CCCATTTTATTTCTTTACAGTTGTCATTGTGGATGTACAGGTCCTCTGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTTATTTCTTTACAGTTGTCATTGTGGATGTACAGGTCCTCTGAA  639

seq1  ATGTATTACTTCCCTGGTTAATGTTAGTAAATTAAAATATAGTGACACCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTACTTCCCTGGTTAATGTTAGTAAATTAAAATATAGTGACACCC  689

seq1  TTCTCTATGGGAGAATTGGTAATAGCATCACACAGAGTTCCATGGCAGTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATGGGAGAATTGGTAATAGCATCACACAGAGTTCCATGGCAGTC  739

seq1  AGCCATTGGAGCCAAAATTGCTGGTACTGATGATGCCCAGCTGTGGGAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATTGGAGCCAAAATTGCTGGTACTGATGATGCCCAGCTGTGGGAGA  789

seq1  ACTGATTTATAGAGACAAAGCAAGAGGTTCTGGATGCTGCAGGGATGAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTTATAGAGACAAAGCAAGAGGTTCTGGATGCTGCAGGGATGAAT  839

seq1  ACCGCTTCTTTCACTGCAGCATCTAAGTTTCATGGGTGTAAACTGTCCAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTTCTTTCACTGCAGCATCTAAGTTTCATGGGTGTAAACTGTCCAC  889

seq1  ATTATAAAATATGTGCACATTTTTATGTAAGCACTGTGTAAATTGGGAAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAAATATGTGCACATTTTTATGTAAGCACTGTGTAAATTGGGAAC  939

seq1  TTGAGGATTTGTTCTAGTAAATATTTTTCTAGTTAAATGTGGAGTGTTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGATTTGTTCTAGTAAATATTTTTCTAGTTAAATGTGGAGTGTTTT  989

seq1  ATTTGTTATCAAAAATAAAGCTGACAAACTTCTTTTCTCCTGTTTCCATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATCAAAAATAAAGCTGACAAACTTCTTTTCTCCTGTTTCCATT  1039

seq1  CATTTTAAGTACAAGTCGTTTTCTGGGTTCTGTGTAAAGAGTTGATAGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGTACAAGTCGTTTTCTGGGTTCTGTGTAAAGAGTTGATAGGT  1089

seq1  TATCTGCAACCCATTCACACTCCTCATTGATTTTAGTGGGAAATTGAATT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAACCCATTCACACTCCTCATTGATTTTAGTGGGAAATTGAATT  1139

seq1  C  1146
      |
seq2  C  1140