BAC Information

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BAC

Clone NameB6Ng01-202D23
Chromosome6 (Build37)10 (Build37)
Map Location 67,685,093 - 67,685,76243,917,657 - 43,917,758
singlet/doubletsingletsinglet
Overlap geneIgk, LOC384401
Upstream geneLOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027
Downstream geneEG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202D23.bB6Ng01-202D23.g
ACCGA022797GA022798
length670112
definitionB6Ng01-202D23.b B6Ng01-202D23.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(67,685,093 - 67,685,762)(43,917,657 - 43,917,758)
sequence
gaattccaggttggacttcttttcgtaatcaagagagccgctccataaac
agggaggtgaacccagagccagttcccccaccaaagctgtggaaaaccaa
gaagccctggagacccgtgcactggtcagccatcttgtgaatcctgtcca
agacaaggtcaaggatctccttgccaatggtatagtagccacgggcatag
ttatttgcagcatcttccttgcctgtgatgagctgctcgggtgaaagagc
tggcggtaggtgccagtgcaaacttcgtctataactgtgggtctacgagc
actgctgggggcacatgtttgacagttcttgtctcactgaagaaggtgtt
gaaggagtcatttcctcccagaaaggtcttgtcacttggcatcaggccat
ggggctggatgctatgttccaggcagtagagctcccagaaggcattgctg
atctggacagcagcttggccaaggtagatggagtagatggagatgcactc
actcatggttgctgcttcgcgaatgccagggaatggtgaaggcaaggagg
aggtgttgctttcagcacaactcttaggtggttcatgccttccttggtgc
tgtgaaggctctatgccccagtataggggagtgccaggaccaggaatggg
agtgggtgtgttggggagca
gaattccagaaacactcaacttttctttatcattaggccgtagattgcat
taaattctaaataattttgttttttggattgtaccttcctatgaaagtgt
gtgttgatggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_67685093_67685762
seq2: B6Ng01-202D23.b_44_713

seq1  GAATTCCAGGTTGGACTTCTTTTCGTAATCAAGAGAGCCGCTCCATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTTGGACTTCTTTTCGTAATCAAGAGAGCCGCTCCATAAAC  50

seq1  AGGGAGGTGAACCCAGAGCCAGTTCCCCCACCAAAGCTGTGGAAAACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTGAACCCAGAGCCAGTTCCCCCACCAAAGCTGTGGAAAACCAA  100

seq1  GAAGCCCTGGAGACCCGTGCACTGGTCAGCCATCTTGTGAATCCTGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCTGGAGACCCGTGCACTGGTCAGCCATCTTGTGAATCCTGTCCA  150

seq1  AGACAAGGTCAAGGATCTCCTTGCCAATGGTATAGTAGCCACGGGCATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGTCAAGGATCTCCTTGCCAATGGTATAGTAGCCACGGGCATAG  200

seq1  TTATTTGCAGCATCTTCCTTGCCTGTGATGAGCTGCTCGGGTGAAAGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCAGCATCTTCCTTGCCTGTGATGAGCTGCTCGGGTGAAAGAGC  250

seq1  TGGCGGTAGGTGCCAGTGCAAACTTCGTCTATAACTGTGGGTCTACGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTAGGTGCCAGTGCAAACTTCGTCTATAACTGTGGGTCTACGAGC  300

seq1  ACTGCTGGGGGCACATGTTTGACAGTTCTTGTCTCACTGAAGAAGGTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGGGGCACATGTTTGACAGTTCTTGTCTCACTGAAGAAGGTGTT  350

seq1  GAAGGAGTCATTTCCTCCCAGAAAGGTCTTGTCACTTGGCATCAGGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTCATTTCCTCCCAGAAAGGTCTTGTCACTTGGCATCAGGCCAT  400

seq1  GGGGCTGGATGCTATGTTCCAGGCAGTAGAGCTCCCAGAAGGCATTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGATGCTATGTTCCAGGCAGTAGAGCTCCCAGAAGGCATTGCTG  450

seq1  ATCTGGACAGCAGCTTGGCCAAGGTAGATGGAGTAGATGGAGATGCACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGACAGCAGCTTGGCCAAGGTAGATGGAGTAGATGGAGATGCACTC  500

seq1  ACTCATGGTTGCTGCTTCGCGAATGCCAGGGAATGGTGAAGGCAAGGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGGTTGCTGCTTCGCGAATGCCAGGGAATGGTGAAGGCAAGGAGG  550

seq1  AGGTGTTGCTTTCAGCACAACTCTTAGGTGGTTCATGCCTTCCTTGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTTGCTTTCAGCACAACTCTTAGGTGGTTCATGCCTTCCTTGGTGC  600

seq1  TGTGAAGGCTCTATGCCCCAGTATAGGGGAGTGCCAGGACCAGGAATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGGCTCTATGCCCCAGTATAGGGGAGTGCCAGGACCAGGAATGGG  650

seq1  AGTGGGTGTGTTGGGGAGCA  670
      ||||||||||||||||||||
seq2  AGTGGGTGTGTTGGGGAGCA  670

seq1: chr10_43917657_43917758
seq2: B6Ng01-202D23.g_62_173

seq1  GAATTCCAGAAACACTCAACTTTCCTTTATCAATTGGCCTTATATT-AAG  49
      ||||||||||||||||||||||| |||||||| | |||| || |||  | 
seq2  GAATTCCAGAAACACTCAACTTTTCTTTATCATTAGGCCGTAGATTGCAT  50

seq1  TAAATTC--------TTTG-GTTTTGGATTTTAACTTCCTATGAAAGTGT  90
      |||||||        ||||  ||||||||| || ||||||||||||||||
seq2  TAAATTCTAAATAATTTTGTTTTTTGGATTGTACCTTCCTATGAAAGTGT  100

seq1  GGGTTGATGGTA  102
      | ||||||||||
seq2  GTGTTGATGGTA  112