BAC Information

Click to search

BAC

Clone NameB6Ng01-204K02
Chromosome6 (Build37)
Map Location 49,474,797 - 49,475,392
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31
Downstream geneLOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-204K02.bB6Ng01-204K02.g
ACCGA024522GA024523
length576860
definitionB6Ng01-204K02.b B6Ng01-204K02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
cagaggtgacaaaaaggaggaaagtctccaagaaacgatcttcatgaacc
aaacacccaaacattccaaaactccaaatacaaatgcacatttagatgta
agatgcttaaaggaccaactaggttcaaccaaagcagacaatatatatat
atatatatatatatatatatatatatatatatatacatacatatatatat
gtgtgtgtgtgtgcgcgcgcgcgcgtgcgtgtgtgtatatatatatatat
atacatatatatacatacatacatattatagtaaaatatcaaaaaataat
cttaaaactagcaagagagggtattaagtccatagaagagagaattccat
tagacttccatcagaaaacagtcaggagaaaatgggatgacacagcaagg
gtcctgaaagggggggggggggaatctccaacatataatcaaaataagtg
aggatgttgggcattgtggtgcattccttagtccagcacttgggagcaga
gcagcagtctctgagattgaggcgagctgtctatgggtatgtctagatac
gcaaggctatacagagaacctgtctc
gaattctgtgggttgcttgtgttaactatcatatcatccttgactttttc
ctttccaatttgtaaccttttgatcttttgtcgtcttattgctctagcta
gaactttaaatactatattgaatagatagggaaagaatgggcaggattgt
cttgttcctgattttagtttgcttgcttcaagtttctctccatttaattt
gatgttggctactggcttgcaatatattgcttttattatgtctttattaa
taattactttattaatattttattatttttattactatgttaggtatgtg
ccttgagtccctgatctctccaagacttttaacatgaagggatgttgtat
tttgtcaaaggctttttcagcatctaatgagatgattatgtgatttacag
tttatgtagtagattacactgatggattttcatatattgaaccatctctt
aattcctgggatgaagcctagttgatagtaaagaataatgtttttgatgt
gttcttggatttggtttgcaagaaatttattgagtatttttgcgtcgatg
ttcataagtgaaattggtctgatgcactctttctttgttgagtctttatg
tggtttacatatcagtgtgactgtggcctcatagaatgaattaggtagtg
ttccttctgtttctgtttttgtggaatagtttgcagagtattagtattag
ctctttctctgaaagtcttaataggaattatgtatctaaaacctatctag
ccctgggttctttttttggttatgaggcttttaatgactgctttctattt
ctttaggggttaggggactgtttagtttacctgatcttggttttaacttt
tgggtaagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49474797_49475392
seq2: B6Ng01-204K02.b_44_625 (reverse)

seq1  GAGACAGGGTTTCTCTGTATAGCCCTGCCTATTCTAGAACTTACCACATA  50
      ||||||||  |||||||||||||| ||| || ||||| || |||| ||||
seq2  GAGACAGG--TTCTCTGTATAGCCTTGCGTA-TCTAG-ACATACC-CATA  45

seq1  GACCAGGCTGGCCTCAATCTCAGAGACTTGCCTGCCTCTGCCTCCCAAGT  100
      |||   ||| ||||||||||||||||||   ||| ||||| |||||||||
seq2  GAC--AGCTCGCCTCAATCTCAGAGACT--GCTG-CTCTG-CTCCCAAGT  89

seq1  GCTGGGACTAAAGGAATGCACCACAATGCCCAACCTCCTCACTTATTTTG  150
      ||| ||||| |||||||||||||||||||||||| |||||||||||||||
seq2  GCT-GGACT-AAGGAATGCACCACAATGCCCAACATCCTCACTTATTTTG  137

seq1  ATTATTTTGTTGGAGATTCCCCCCCCCCCCCTTTCAGGACCCTTGCTGTG  200
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTA-TATGTTGGAGATTCCCCCCCCCCCCCTTTCAGGACCCTTGCTGTG  186

seq1  TCATCCCATTTTCTCCTGACTGTTTTCTGATGGAAGTCTAATGGAATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCATTTTCTCCTGACTGTTTTCTGATGGAAGTCTAATGGAATTCT  236

seq1  CTCTTCTATGGACTTAATACCCTCTCTTGCTAGTTTTAAGATTATTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTATGGACTTAATACCCTCTCTTGCTAGTTTTAAGATTATTTTTT  286

seq1  GATATTTTACTATAATATGTATGTATGTATATATATGTATATATATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTACTATAATATGTATGTATGTATATATATGTATATATATATAT  336

seq1  ATATACACACACGCACGCGCGCGCGCGCACACACACACACATATATATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACACACGCACGCGCGCGCGCGCACACACACACACATATATATAT  386

seq1  GTATGTATATATATATATATATATATATATATATATATATATATATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATATATATATATATATATATATATATATATATATATATATATAT  436

seq1  TGTCTGCTTTGGTTGAACCTAGTTGGTCCTTTAAGCATCTTACATCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTTTGGTTGAACCTAGTTGGTCCTTTAAGCATCTTACATCTAAA  486

seq1  TGTGCATTTGTATTTGGAGTTTTGGAATGTTTGGGTGTTTGGTTCATGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTGTATTTGGAGTTTTGGAATGTTTGGGTGTTTGGTTCATGAA  536

seq1  GATCGTTTCTTGGAGACTTTCCTCCTTTTTGTCACCTCTGGAATTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCGTTTCTTGGAGACTTTCCTCCTTTTTGTCACCTCTGGAATTC  582