BAC Information

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BAC

Clone NameB6Ng01-208F15
Chromosome6 (Build37)
Map Location 4,956,420 - 5,085,084
singlet/doubletdoublet
Overlap genePpp1r9a
Upstream geneGng11, 4930528H21Rik, Bet1, LOC667381, LOC100039965, Col1a2, Casd1, Sgce, Peg10, LOC100040018
Downstream genePon1, Pon3, Pon2, Asb4, Pdk4, Dync1i1, Slc25a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208F15.bB6Ng01-208F15.g
ACCGA027256GA027257
length1,1061,128
definitionB6Ng01-208F15.b B6Ng01-208F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,083,987 - 5,085,084)(4,956,420 - 4,957,549)
sequence
gaattctcttactccctaagacctaagaaggaaagcagtgctctaaggtt
gtgtgcctatgagaaaaaaaaaactagttttacaccatacacattgtgtt
attagtgatgccacatcaaccagaaggggaagaacaaaacaaactcacgt
acctttctcttgtaacgctttctcagtggcttggtggcagcaaggagagt
cttctgtgtcatgatcggatgctgaagtcgaggaggatgaagtgtctccc
gagatagaggagaaagggtccccttctggatgctgtgatcctcctggaga
ctcagtcgtgtggtgggatgagaaggccctagggctcgtcacgggggtga
ggagtgtgacaccacactccgattctggagaagaaactctccaagccttg
ggcagaagcgatttggtaacatatgtgtggttatagtgtctgagggctgt
tggtatagaggtcatagagcagatttatgcctgagtgtcaggactgggca
gcgtttactttgaaacggcctcaccttttcctgggaaaggaatttttatt
tgttggcttaccgccgagaatgcacagtttataactactcaccaaatcaa
ctgtgcagctaacacaggcacctaaggcatgtagaaatgattactgggat
gttcattatttccactagattaaaacaacagccgaacatcaaaggcacca
ctatgaaatacggcaatgtggataattgcttttggctaccttactgaatg
gaggaaaggatttaaatgacaaccatatagcaattgaatacaaatttagg
agactttcttccaagtaaggcacagatcagtaaaaccgctatcacgttca
ataaatacactgggtggacaacgacactctgcaagagtctgccagccatt
gagagtgctcaccttcctctccaggctgttcctccccatcagttgagctg
acgctgtcatagagcccgtgtccttgtgggcttctggccgcctgttcttc
acagagagctggccccgggttttcaatgctttcgaatccaggccgctctg
tcctctgggaactgcttcatccagttctaggagagttattgccaaataat
ttgtga
gaattccagacttgccagcctcagaacaaaaacaaaagcaaaaccaaaaa
gttgcttttagggaacagctgttggcataagagactgaggggtgagagcc
cttattttaaggcctcactccccgctcttctgtagctgaactccaggttc
cagtctgttaggtggggttgattctatacttgacactccatctgactact
gaaaagtggctacatgggcacaacatacacatgggcactgtggactttag
taagtagaagtctggctgtgcattttctgtgtctctccacagcttcacag
ttagtatcctcccacttccccatttccttggagaacggggctaggagcac
cgcagtgcctgtcctcgctcagtcatggcatggagtctggaagccctgtc
agctctttgtgcgtaagagctcctagctcagcttccctggatgccacacc
ctgcactcttgccccagccatcttgtctagattgcttcgatggcatagga
gatgctggtttcctcttctttagttagcttttcaaaggcagctcatctcc
ttagatgtgtgctttccagacaatcgttattttataattaacaattatga
cgaggaattcataattccccatgaatctctcatacctatttgatcatatc
cagacttaggtctattctttaggaatttctaacatgtctcctaggttgtc
actgaccagtttttccctgcttctcactgtacttcagtatatttttctac
ccaaatgagtacctttcccaacgcaccccacattgggtttctctactctt
atatttttggttgtgagcctagactttaatggttgagccttctctccagc
ctggggtttctacattctgtaagacatttatatcctgacacattttaaca
cctatgccacctattgggtacctactgtattccaggtaaaatgccaaata
tttcatgtagctggctatgcccaattgatttctgcttaactgtacaaata
ttattctttcatgtaaattttagtttcaaaaggcacgacgctacattagt
ctctgctgttcatctaagcagatgattcccacctcataatgtgtaagaat
tgatggacatttttatgttcttcgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_5083987_5085084
seq2: B6Ng01-208F15.b_46_1151 (reverse)

seq1  TCACAAATTATTTTGCAAT-ACTCTCCCTAGACCTGAATGAAGCAG-TCC  48
      ||||||||||||| ||||| ||||| |||||| ||| ||||||||| |||
seq2  TCACAAATTATTTGGCAATAACTCT-CCTAGAACTGGATGAAGCAGTTCC  49

seq1  CAGA-GACAGAGC-GCCTGGATTCGAAAGCATTGAAAACCCGGGCCCAGC  96
      |||| |||||||| |||||||||||||||||||||||||||||| |||||
seq2  CAGAGGACAGAGCGGCCTGGATTCGAAAGCATTGAAAACCCGGGGCCAGC  99

seq1  TCTCTGTGAAGAACAGGC-GCCAGAGGCCCACAAGGACAC-GGCTCTATG  144
      |||||||||||||||||| |||||| |||||||||||||| |||||||||
seq2  TCTCTGTGAAGAACAGGCGGCCAGAAGCCCACAAGGACACGGGCTCTATG  149

seq1  ACAGCGTCAGCTCAACTGATGGGGAGG-ACAGCCTGGAGAGGAAGGTGAG  193
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAGCGTCAGCTCAACTGATGGGGAGGAACAGCCTGGAGAGGAAGGTGAG  199

seq1  CACTCTCAATGGCTGGCAGACTCTTGCAGAGTGTCGTTGTCCA-CCAGTG  242
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACTCTCAATGGCTGGCAGACTCTTGCAGAGTGTCGTTGTCCACCCAGTG  249

seq1  TATTTATTGAACGTGATAGCGGTTTTACTGATCTGTGCCTTACTTGGAAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGAACGTGATAGCGGTTTTACTGATCTGTGCCTTACTTGGAAG  299

seq1  AAAGTCTCCTAAATTTGTATTCAATTGCTATATGGTTGTCATTTAAATCC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCCTAAATTTGTATTCAATTGCTATATGGTTGTCATTTAAATCC  349

seq1  TTTCCTCCATTCAGTAAGGTAGCCAAAAGC-ATTATCCACATTGCCGTAT  391
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTCCTCCATTCAGTAAGGTAGCCAAAAGCAATTATCCACATTGCCGTAT  399

seq1  TTCATAGTGGTGCCTTTGATGTTCGGCTGTTGTTTTAATCTAGTGGAAAT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGTGGTGCCTTTGATGTTCGGCTGTTGTTTTAATCTAGTGGAAAT  449

seq1  AATGAACATCCCAGTAATCATTTCTACATGCCTTAGGTGCCTGTGTTAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACATCCCAGTAATCATTTCTACATGCCTTAGGTGCCTGTGTTAGC  499

seq1  TGCACAGTTGATTTGGTGAGTAGTTATAAACTGTGCATTCTCGGCGGTAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGTTGATTTGGTGAGTAGTTATAAACTGTGCATTCTCGGCGGTAA  549

seq1  GCCAACAAATAAAAATTCCTTTCCCAGGAAAAGGTGAGGCCGTTTCAAAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAAATAAAAATTCCTTTCCCAGGAAAAGGTGAGGCCGTTTCAAAG  599

seq1  TAAACGCTGCCCAGTCCTGACACTCAGGCATAAATCTGCTCTATGACCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGCTGCCCAGTCCTGACACTCAGGCATAAATCTGCTCTATGACCTC  649

seq1  TATACCAACAGCCCTCAGACACTATAACCACACATATGTTACCAAATCGC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAACAGCCCTCAGACACTATAACCACACATATGTTACCAAATCGC  699

seq1  TTCTGCCCAAGGCTTGGAGAGTTTCTTCTCCAGAATCGGAGTGTGGTGTC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCCAAGGCTTGGAGAGTTTCTTCTCCAGAATCGGAGTGTGGTGTC  749

seq1  ACACTCCTCACCCCCGTGACGAGCCCTAGGGCCTTCTCATCCCACCACAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCTCACCCCCGTGACGAGCCCTAGGGCCTTCTCATCCCACCACAC  799

seq1  GACTGAGTCTCCAGGAGGATCACAGCATCCAGAAGGGGACCCTTTCTCCT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTCTCCAGGAGGATCACAGCATCCAGAAGGGGACCCTTTCTCCT  849

seq1  CTATCTCGGGAGACACTTCATCCTCCTCGACTTCAGCATCCGATCATGAC  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCGGGAGACACTTCATCCTCCTCGACTTCAGCATCCGATCATGAC  899

seq1  ACAGAAGACTCTCCTTGCTGCCACCAAGCCACTGAGAAAGCGTTACAAGA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGACTCTCCTTGCTGCCACCAAGCCACTGAGAAAGCGTTACAAGA  949

seq1  GAAAGGTACGTGAGTTTGTTTTGTTCTTCCCCTTCTGGTTGATGTGGCAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGTACGTGAGTTTGTTTTGTTCTTCCCCTTCTGGTTGATGTGGCAT  999

seq1  CACTAATAACACAATGTGTATGGTGTAAAACTAGTTTTTTTTTTCTCATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAACACAATGTGTATGGTGTAAAACTAGTTTTTTTTTTCTCATA  1049

seq1  GGCACACAACCTTAGAGCACTGCTTTCCTTCTTAGGTCTTAGGGAGTAAG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAACCTTAGAGCACTGCTTTCCTTCTTAGGTCTTAGGGAGTAAG  1099

seq1  AGAATTC  1098
      |||||||
seq2  AGAATTC  1106

seq1: chr6_4956420_4957549
seq2: B6Ng01-208F15.g_70_1197

seq1  GAATTCCAGACTTGCCAGCCTCAGAACAAAAACAAAAGCAAAACCAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACTTGCCAGCCTCAGAACAAAAACAAAAGCAAAACCAAAAA  50

seq1  GTTGCTTTTAGGGAACAGCTGTTGGCATAAGAGACTGAGGGGTGAGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTTTAGGGAACAGCTGTTGGCATAAGAGACTGAGGGGTGAGAGCC  100

seq1  CTTATTTTAAGGCCTCACTCCCCGCTCTTCTGTAGCTGAACTCCAGGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTAAGGCCTCACTCCCCGCTCTTCTGTAGCTGAACTCCAGGTTC  150

seq1  CAGTCTGTTAGGTGGGGTTGATTCTATACTTGACACTCCATCTGACTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTTAGGTGGGGTTGATTCTATACTTGACACTCCATCTGACTACT  200

seq1  GAAAAGTGGCTACATGGGCACAACATACACATGGGCACTGTGGACTTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTGGCTACATGGGCACAACATACACATGGGCACTGTGGACTTTAG  250

seq1  TAAGTAGAAGTCTGGCTGTGCATTTTCTGTGTCTCTCCACAGCTTCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTAGAAGTCTGGCTGTGCATTTTCTGTGTCTCTCCACAGCTTCACAG  300

seq1  TTAGTATCCTCCCACTTCCCCATTTCCTTGGAGAACGGGGCTAGGAGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCCTCCCACTTCCCCATTTCCTTGGAGAACGGGGCTAGGAGCAC  350

seq1  CGCAGTGCCTGTCCTCGCTCAGTCATGGCATGGAGTCTGGAAGCCCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTGCCTGTCCTCGCTCAGTCATGGCATGGAGTCTGGAAGCCCTGTC  400

seq1  AGCTCTTTGTGCGTAAGAGCTCCTAGCTCAGCTTCCCTGGATGCCACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGTGCGTAAGAGCTCCTAGCTCAGCTTCCCTGGATGCCACACC  450

seq1  CTGCACTCTTGCCCCAGCCATCTTGTCTAGATTGCTTCGATGGCATAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCTTGCCCCAGCCATCTTGTCTAGATTGCTTCGATGGCATAGGA  500

seq1  GATGCTGGTTTCCTCTTCTTTAGTTAGCTTTTCAAAGGCAGCTCATCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGTTTCCTCTTCTTTAGTTAGCTTTTCAAAGGCAGCTCATCTCC  550

seq1  TTAGATGTGTGCTTTCCAGACAATCGTTATTTTATAATTAACAATTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTGTGCTTTCCAGACAATCGTTATTTTATAATTAACAATTATGA  600

seq1  CGAGGAATTCATAATTCCCCATGAATCTCTCATACCTATTTGATCATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAATTCATAATTCCCCATGAATCTCTCATACCTATTTGATCATATC  650

seq1  CAGACTTAGGTCTATTCTTTAGGAATTTCTAACATGTCTCCTAGGTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTAGGTCTATTCTTTAGGAATTTCTAACATGTCTCCTAGGTTGTC  700

seq1  ACTGACCAGTTTTTCCCTGCTTCTCACTGTACTTCAGTATATTTTTCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAGTTTTTCCCTGCTTCTCACTGTACTTCAGTATATTTTTCTAC  750

seq1  CCAAATGAGTACCTTTCCCAACGCACCCCACATTGGGTTTCTCTACTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAGTACCTTTCCCAACGCACCCCACATTGGGTTTCTCTACTCTT  800

seq1  ATATTTTTGGTTGTGAGCCTAGACTTTAATGGTTGAGCCTTCTCTCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTTGGTTGTGAGCCTAGACTTTAATGGTTGAGCCTTCTCTCCAGC  850

seq1  CT-GGGTTTCTACATTCTGTAAGACATTTATATCCTGACACA-TTTAACA  898
      || ||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGGGGTTTCTACATTCTGTAAGACATTTATATCCTGACACATTTTAACA  900

seq1  CCTATGCCACCTATTGGGTACCTACTGTATTCCAGGTAAAATGCCAAATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCCACCTATTGGGTACCTACTGTATTCCAGGTAAAATGCCAAATA  950

seq1  TTTCATGTAGCTGGCTATTGCCCATTGATTTCTGCTTAACTGTACAAATA  998
      ||||||||||||||||||  || |||||||||||||||||||||||||||
seq2  TTTCATGTAGCTGGCTATGCCCAATTGATTTCTGCTTAACTGTACAAATA  1000

seq1  -TAT--CTTCATGGTAAAATTTTAAGTTTTCAAAAGGCACGGACGCTACA  1045
       |||   ||||||   ||||||||   ||||||||||||| |||||||||
seq2  TTATTCTTTCATG--TAAATTTTA--GTTTCAAAAGGCAC-GACGCTACA  1045

seq1  TTAGTCCTCTTGCTTGTTCATCTTAGCAAGATTGATTTCCCACTCAT-AT  1094
      ||||| ||| ||| ||||||||| ||| ||| ||||| ||  ||||| ||
seq2  TTAGT-CTC-TGC-TGTTCATCTAAGC-AGA-TGATTCCCACCTCATAAT  1090

seq1  GTGTTAAGATTGATGGACA-TTTTATG-TCCTCGAAAG  1130
      |||| |  ||||||||||| ||||||| || |||||||
seq2  GTGTAAGAATTGATGGACATTTTTATGTTCTTCGAAAG  1128