BAC Information

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BAC

Clone NameB6Ng01-209B17
Chromosome6 (Build37)
Map Location 114,965,424 - 115,169,411
singlet/doubletdoublet
Overlap gene1500001M20Rik, LOC100043420, Syn2
Upstream geneAtp2b2, Slc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4
Downstream geneTimp4, Pparg, Tsen2, 2510049J12Rik, Mkrn2, Raf1, LOC100043759, D830050J10Rik, Tmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209B17.bB6Ng01-209B17.g
ACCGA027812GA027813
length9511,067
definitionB6Ng01-209B17.b B6Ng01-209B17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,965,424 - 114,966,372)(115,168,366 - 115,169,411)
sequence
gaattcagggtcacccttggctacatagggacccgaagaacagcctgggc
tgccactgactgtctaaaacaataaaagcaagaagaaaatgtggcacaga
tattcaacagaatcttatagaaaaatgaacccatggtgactgcaggaaag
tggccgcgaggcaaccttactgtaatgagaggctgtgagggaagtggaca
gggctgggcgatggaacacacgtgataagaagcaagcggtgactgagtga
ctagtggacaaaagggaagtggtcagagcggggcagggcactcagggtgg
ggcgtgaaagggaacgaagtataaggacccacgtgtatgaaaatgccagt
gaagctcgttactcttagcataaacatcagtacagtcaacaaagacacag
ttctcgccgctggcctctggagctggcctgtaattccagcttcctggagc
acggaggcagaagactgccaggttcaaggcttccaaggtattggagtgag
ttcaaaaccatcctgggcaacttaaaaaagactgtctcaaaagaaatagt
accgagagggctagacgtagctcagggatctagtatgtgtgaggaacggg
tttaattactcctacttcagaaaacataaacaaataaataccggctcttc
ctttggtagtaggaacacacagctcacctccagttggccttgatgcatct
tatacaccacctgggggtccttctgtaatatactctcatagagctctcgg
aaatggcctacgttgggcttcacgatgttcaacacttttgatttttcctc
gccaatcaccatgcggaagtcacctaagttaatacaaccagagaagtcag
tcttcctcgaacaattcccaccctggcccgtgaacagtggtggctcggca
caacacctcttttctgctttaaaatgggccattgtgagctggggcatggg
g

gaattccaactaaatacttttctttgtaagagttgcttataaactcactg
tgtctcttcacagcaattgaaaccctgacttaggacagccagcaacctaa
atatatagatatctctattatgtgacttagattccttcaagcatcctcag
gaatacagctggatcatatggtagttctatgttcagttgttctgaagaac
ccagctattgatcttcacagtggctggactaattcatattaccccttggc
tgcacagagaattcctccctttccttcttaacccttaccacatcctcact
ggcatttgttgtcgtatagaactttttctttctttcctttatttttttta
aggcagggtctcactttgtatctgaggctgatctcaaacctccaatcctt
ctaccttggcctctgatgttctgagattttaagtgtgtgccaccgaacag
actggcactcagcttagaaacttgtgatccttctaccgatgcctcttgag
acctaggattacagctgtatgtcacaatacacaaatgtatagaaatttaa
atttgtctttattttatctatcttattcagataaatatctcaaactcctt
atgttcactgggggaactgctgcttaatagatatatagattcaattttct
aaaacgaaaaatagttctgaagagatcagctgtacaacaaaataaataca
tttaacactgctatatacttaaaatgattaagattataaatatacatgta
ttttattaaaagctaatatattttattaaaatctggagagatggctcagt
ggagagatggcactgactgctcttccagtagtcccgagttcaattcccag
caacaaaatggtgctcacaactatctgtaatgggatctgatgccctcttc
tgatatgtctgaagagagtgacagtgtacttacatacataataaataaat
ctttaaaaaaagctagttgtatatttgctgcaccttttagttaggagata
gatatttcaataattttattatctatcatgtatatctcagatataccaca
tatgatttttttttgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114965424_114966372
seq2: B6Ng01-209B17.b_43_993

seq1  GAATTCAGGGTCACCCTTGGCTACATAGGGACCCGAAGAACAGCCTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGTCACCCTTGGCTACATAGGGACCCGAAGAACAGCCTGGGC  50

seq1  TGCCACTGACTGTCTAAAACAATAAAAGCAAGAAGAAAATGTGGCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTGACTGTCTAAAACAATAAAAGCAAGAAGAAAATGTGGCACAGA  100

seq1  TATTCAACAGAATCTTATAGAAAAATGAACCCATGGTGACTGCAGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAACAGAATCTTATAGAAAAATGAACCCATGGTGACTGCAGGAAAG  150

seq1  TGGCCGCGAGGCAACCTTACTGTAATGAGAGGCTGTGAGGGAAGTGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGCGAGGCAACCTTACTGTAATGAGAGGCTGTGAGGGAAGTGGACA  200

seq1  GGGCTGGGCGATGGAACACACGTGATAAGAAGCAAGCGGTGACTGAGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGCGATGGAACACACGTGATAAGAAGCAAGCGGTGACTGAGTGA  250

seq1  CTAGTGGACAAAAGGGAAGTGGTCAGAGCGGGGCAGGGCACTCAGGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGACAAAAGGGAAGTGGTCAGAGCGGGGCAGGGCACTCAGGGTGG  300

seq1  GGCGTGAAAGGGAACGAAGTATAAGGACCCACGTGTATGAAAATGCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGAAAGGGAACGAAGTATAAGGACCCACGTGTATGAAAATGCCAGT  350

seq1  GAAGCTCGTTACTCTTAGCATAAACATCAGTACAGTCAACAAAGACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCGTTACTCTTAGCATAAACATCAGTACAGTCAACAAAGACACAG  400

seq1  TTCTCGCCGCTGGCCTCTGGAGCTGGCCTGTAATTCCAGCTTCCTGGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGCCGCTGGCCTCTGGAGCTGGCCTGTAATTCCAGCTTCCTGGAGC  450

seq1  ACGGAGGCAGAAGACTGCCAGGTTCAAGGCTTCCAAGGTATTGGAGTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGGCAGAAGACTGCCAGGTTCAAGGCTTCCAAGGTATTGGAGTGAG  500

seq1  TTCAAAACCATCCTGGGCAACTTAAAAAAGACTGTCTCAAAAGAAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACCATCCTGGGCAACTTAAAAAAGACTGTCTCAAAAGAAATAGT  550

seq1  ACCGAGAGGGCTAGACGTAGCTCAGGGATCTAGTATGTGTGAGGAACGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGAGGGCTAGACGTAGCTCAGGGATCTAGTATGTGTGAGGAACGGG  600

seq1  TTTAATTACTCCTACTTCAGAAAACATAAACAAATAAATACCGGCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTACTCCTACTTCAGAAAACATAAACAAATAAATACCGGCTCTTC  650

seq1  CTTTGGTAGTAGGAACACACAGCTCACCTCCAGTTGGCCTTGATGCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTAGTAGGAACACACAGCTCACCTCCAGTTGGCCTTGATGCATCT  700

seq1  TATACACCACCTGGGGGTCCTTCTGTAATATACTCTCATAGAGCTCTCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACACCACCTGGGGGTCCTTCTGTAATATACTCTCATAGAGCTCTCGG  750

seq1  AAATGGCCTACGTTGGGCTTCACGATGTTCAACACTTTTGATTTTTCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCTACGTTGGGCTTCACGATGTTCAACACTTTTGATTTTTCCTC  800

seq1  GCCAATCACCATGCGGAAGTCACCTAAGTTAATACAACCAGAGAAGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATCACCATGCGGAAGTCACCTAAGTTAATACAACCAGAGAAGTCAG  850

seq1  TCTTCCTCGAACAATTCCCACCCTGGCCCGTGAACAGTGGTGGCTCGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCGAACAATTCCCACCCTGGCCCGTGAACAGTGGTGGCTCGGCA  900

seq1  CAACACCTCTTTTCTGCTTTAAAAT-GGCCATTGTGAGCT-GGGCATGGT  948
      ||||||||||||||||||||||||| |||||||||||||| |||||||| 
seq2  CAACACCTCTTTTCTGCTTTAAAATGGGCCATTGTGAGCTGGGGCATGGG  950

seq1  G  949
      |
seq2  G  951


seq1: chr6_115168366_115169411
seq2: B6Ng01-209B17.g_90_1131 (reverse)

seq1  CACACAAAAAAATCATATGT-GTATATCTGAGATATTACATGATAGATAA  49
      |||| ||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CACAAAAAAAAATCATATGTGGTATATCTGAGATA-TACATGATAGATAA  49

seq1  TAAAATTATTTGAAATATCTATCTCCTAACTAAAAGGGTGCAGCAATTAT  99
      |||||||| |||||||||||||||||||||||||| |||||||||| || 
seq2  TAAAATTA-TTGAAATATCTATCTCCTAACTAAAA-GGTGCAGCAAATA-  96

seq1  TACAACTAGCTTTTTTTTAAAGATTTATTTATTATGTATGTAAGTACACT  149
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACAACTAGC-TTTTTTTAAAGATTTATTTATTATGTATGTAAGTACACT  145

seq1  GTCACTCTCTTCAGACATATCAGAAGAGGGCATCAGATCCCATTACAGAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTCTCTTCAGACATATCAGAAGAGGGCATCAGATCCCATTACAGAT  195

seq1  AGTTGTGAGCACCATTTTGTTGCTGGGAATTGAACTCGGGACTACTGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGCACCATTTTGTTGCTGGGAATTGAACTCGGGACTACTGGAA  245

seq1  GAGCAGTCAGTGCCATCTCTCCACTGAGCCATCTCTCCAGATTTTAATAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTCAGTGCCATCTCTCCACTGAGCCATCTCTCCAGATTTTAATAA  295

seq1  AATATATTAGCTTTTAATAAAATACATGTATATTTATAATCTTAATCATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTAGCTTTTAATAAAATACATGTATATTTATAATCTTAATCATT  345

seq1  TTAAGTATATAGCAGTGTTAAATGTATTTATTTTGTTGTACAGCTGATCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATATAGCAGTGTTAAATGTATTTATTTTGTTGTACAGCTGATCT  395

seq1  CTTCAGAACTATTTTTCGTTTTAGAAAATTGAATCTATATATCTATTAAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAACTATTTTTCGTTTTAGAAAATTGAATCTATATATCTATTAAG  445

seq1  CAGCAGTTCCCCCAGTGAACATAAGGAGTTTGAGATATTTATCTGAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTTCCCCCAGTGAACATAAGGAGTTTGAGATATTTATCTGAATAA  495

seq1  GATAGATAAAATAAAGACAAATTTAAATTTCTATACATTTGTGTATTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATAAAATAAAGACAAATTTAAATTTCTATACATTTGTGTATTGTG  545

seq1  ACATACAGCTGTAATCCTAGGTCTCAAGAGGCATCGGTAGAAGGATCACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGCTGTAATCCTAGGTCTCAAGAGGCATCGGTAGAAGGATCACA  595

seq1  AGTTTCTAAGCTGAGTGCCAGTCTGTTCGGTGGCACACACTTAAAATCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTAAGCTGAGTGCCAGTCTGTTCGGTGGCACACACTTAAAATCTC  645

seq1  AGAACATCAGAGGCCAAGGTAGAAGGATTGGAGGTTTGAGATCAGCCTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCAGAGGCCAAGGTAGAAGGATTGGAGGTTTGAGATCAGCCTCA  695

seq1  GATACAAAGTGAGACCCTGCCTTAAAAAAAATAAAGGAAAGAAAGAAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAGTGAGACCCTGCCTTAAAAAAAATAAAGGAAAGAAAGAAAAA  745

seq1  GTTCTATACGACAACAAATGCCAGTGAGGATGTGGTAAGGGTTAAGAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATACGACAACAAATGCCAGTGAGGATGTGGTAAGGGTTAAGAAGG  795

seq1  AAAGGGAGGAATTCTCTGTGCAGCCAAGGGGTAATATGAATTAGTCCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGGAATTCTCTGTGCAGCCAAGGGGTAATATGAATTAGTCCAGC  845

seq1  CACTGTGAAGATCAATAGCTGGGTTCTTCAGAACAACTGAACATAGAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGAAGATCAATAGCTGGGTTCTTCAGAACAACTGAACATAGAACT  895

seq1  ACCATATGATCCAGCTGTATTCCTGAGGATGCTTGAAGGAATCTAAGTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATGATCCAGCTGTATTCCTGAGGATGCTTGAAGGAATCTAAGTCA  945

seq1  CATAATAGAGATATCTATATATTTAGGTTGCTGGCTGTCCTAAGTCAGGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGAGATATCTATATATTTAGGTTGCTGGCTGTCCTAAGTCAGGG  995

seq1  TTTCAATTGCTGTGAAGAGACACAGTGAGTTTATAAGCAACTCTTAC  1046
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTGCTGTGAAGAGACACAGTGAGTTTATAAGCAACTCTTAC  1042


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