BAC Information

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BAC

Clone NameB6Ng01-210A16
Chromosome6 (Build37)
Map Location 69,612,384 - 69,613,512
singlet/doubletsinglet
Overlap geneIgk
Upstream geneIgkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420
Downstream geneIgkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35, Igkv8-34, U29423, ENSMUSG00000053690, Igkv8-31, Igkv8-30, LOC545852, Igkv6-29, Igkv8-28, Igkv8-27, Igkv8-26, LOC667812, Igkv6-25, Igkv8-24, Igkv8-23-1, Igkv6-23, LOC667829, Igkv8-22, Igk-V8-21, EG667840, Igk-V19-20, Igk-V8-19, Igk-V8-18, LOC667863, Igk-V19-17, Igk-V8-16, Igk-V19-15, LOC667872, LOC620497, Igk-V19-14, LOC667889, Igk-V19-13, LOC667902, Igkv3-12-1, Igk-V21-12, Igk-V21-11, Igk-V21-10, Igk-V21-9, Igk-V21-8, Igk-V21-7, Igk-V21-6, Igk-V21-5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210A16.bB6Ng01-210A16.g
ACCGA028488GA028489
length9101,117
definitionB6Ng01-210A16.b B6Ng01-210A16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagacccagaaatgaacccacacacctatggtcacttgatcttc
gacaagggagctaaaaccatccagtggaagaaagacagcattttcaacaa
ttggtgctggcacaactggttgttaccatgtagaagaatgtgaatcgatc
cctactcatctccttgtactaaggtcaaatctaaatggatcaaagaactt
cacataaaaccagagacactgaaacttatagaggagaaagtggggaaaag
ccttgaagatatgggcacaggggaaaaattcctgaacagaacagcaatgg
cttgtgctgtaagatcgagaattgacaaatgggacctaatgaaactctaa
agtttctgcaaggcaaaagacaccgtcaataagacaaagagaccaccaac
agattgggaaaggatctttacctatcctaaatcagatactggactaatat
ccaacatatataaagaactcaagaaggtggacttcagaaaatcaaataac
cccattaaaaaatggggctcagaactgaacaaagaattctcacctgagga
ataccgaatggcagagaagcacctgaaaatatgttcaacatccttaatca
tcagggaaatgcaaatcaaaacaaccctaagattccacctcacaccactc
agaatggctaagataaaaaattcaggtgtcagcagatgctggcgaggatg
tggagaaacactcctccattgttggtgggattgcaggcttgtacaaccac
tctggaaatccgactggcggttcctcagaaaattggacatagtactaccg
gaggatccagcaataccttctcctgggcatatatccagaagatgccccaa
ctggtaagaaggacacatgctccacctatgtttcatagcaaccttattta
taatacccag
gaattcctctggacattcatagaaggatataattttctgttatcttttaa
gcaccttatatgagagggagactcaagaaatcctttatccctttattcaa
tcttctgtgaagtaaataggaacaaagaccaaaaaatgaaataaaaacct
tctgttgttttgagaggtctattctactcaaggcagtctgttggccctct
ggggaggcaaaagtattaactgtaagaagtatggaatcccaaagggctac
tatgcaaaacaccataagttagaactgaaagtatgtcgttactaagaaga
caccttctgtttccactcttcttcactgtattattaaatgtgatgaatag
cactttctgtagtgtacatgtcaaaatagtttataataggaaatgaatga
aactggctgtcatatgactgaagtacagctcaccattaatactcagagtt
aattgtaataatgaatcccaggatcattttagtgaacaaatcttagagac
acaaggtcacactaatgaggaacacatttaaggaagtttgaagaacaaaa
gtcacaaacagaaaacctgagactttattcttcttttgaataaatgtcat
agtctcatttgaacacaaatgaacccttgattaagtattgtaagttgcat
agtgtagactggagaagatcctatataatacaaaccctgttaaatattat
gtttatccaaatagtttttgcatcaaagatcactcagagccagtaacaaa
atgatatatgttgtcaatattccaactcataaggcacaccttccaccatg
ctttttactttgagctaaatattaaaatgagttttgtttttaaatctgat
tttctaattttggctgttttttgtgcataactatttattgaacatattat
ataggcagttttgagtattcctttaactaggttttcataatttagggtta
aagaaagaaactaagtccattctgaaagttgtgggctgtatttcaaacaa
tccattatacttcaactatattcccccctttggcacatgtatatctaata
tatttttgcattgattttttggtgacttcctcttatcatatgagctctag
tacagagccaggaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_69612384_69613512
seq2: B6Ng01-210A16.g_66_1182

seq1  GAATTCCTCTGGACATTCATAGAAGGATATAATTTTCTGTTATCTTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTGGACATTCATAGAAGGATATAATTTTCTGTTATCTTTTAA  50

seq1  GCACCTTATATGAGAGGGAGACTCAAGAAATCCTTTATCCCTTTATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTATATGAGAGGGAGACTCAAGAAATCCTTTATCCCTTTATTCAA  100

seq1  TCTTCTGTGAAGTAAATAGGAACAAAGACCAAAAAATGAAATAAAAACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTGAAGTAAATAGGAACAAAGACCAAAAAATGAAATAAAAACCT  150

seq1  TCTGTTGTTTTGAGAGGTCTATTCTACTCAAGGCAGTCTGTTGGCCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGTTTTGAGAGGTCTATTCTACTCAAGGCAGTCTGTTGGCCCTCT  200

seq1  GGGGAGGCAAAAGTATTAACTGTAAGAAGTATGGAATCCCAAAGGGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGCAAAAGTATTAACTGTAAGAAGTATGGAATCCCAAAGGGCTAC  250

seq1  TATGCAAAACACCATAAGTTAGAACTGAAAGTATGTCGTTACTAAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAAAACACCATAAGTTAGAACTGAAAGTATGTCGTTACTAAGAAGA  300

seq1  CACCTTCTGTTTCCACTCTTCTTCACTGTATTATTAAATGTGATGAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCTGTTTCCACTCTTCTTCACTGTATTATTAAATGTGATGAATAG  350

seq1  CACTTTCTGTAGTGTACATGTCAAAATAGTTTATAATAGGAAATGAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCTGTAGTGTACATGTCAAAATAGTTTATAATAGGAAATGAATGA  400

seq1  AACTGGCTGTCATATGACTGAAGTACAGCTCACCATTAATACTCAGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCTGTCATATGACTGAAGTACAGCTCACCATTAATACTCAGAGTT  450

seq1  AATTGTAATAATGAATCCCAGGATCATTTTAGTGAACAAATCTTAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATAATGAATCCCAGGATCATTTTAGTGAACAAATCTTAGAGAC  500

seq1  ACAAGGTCACACTAATGAGGAACACATTTAAGGAAGTTTGAAGAACAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTCACACTAATGAGGAACACATTTAAGGAAGTTTGAAGAACAAAA  550

seq1  GTCACAAACAGAAAACCTGAGACTTTATTCTTCTTTTGAATAAATGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAACAGAAAACCTGAGACTTTATTCTTCTTTTGAATAAATGTCAT  600

seq1  AGTCTCATTTGAACACAAATGAACCCTTGATTAAGTATTGTAAGTTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCATTTGAACACAAATGAACCCTTGATTAAGTATTGTAAGTTGCAT  650

seq1  AGTGTAGACTGGAGAAGATCCTATATAATACAAACCCTGTTAAATATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGACTGGAGAAGATCCTATATAATACAAACCCTGTTAAATATTAT  700

seq1  GTTTATCCAAATAGTTTTTGCATCAAAGATCACTCAGAGCCAGTAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCCAAATAGTTTTTGCATCAAAGATCACTCAGAGCCAGTAACAAA  750

seq1  ATGATATATGTTGTCAATATTCCAACTCATAAGGCACACCTTCCACCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATATATGTTGTCAATATTCCAACTCATAAGGCACACCTTCCACCATG  800

seq1  CTTTTTACTTTGAGCTAAATATTAAAATGAGTTTTGTTTTTAAATCTGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACTTTGAGCTAAATATTAAAATGAGTTTTGTTTTTAAATCTGAT  850

seq1  TTTCTAATTTTGGCTGTTTTTTGTGCATAACTATTTATTGAACATATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAATTTTGGCTGTTTTTTGTGCATAACTATTTATTGAACATATTAT  900

seq1  ATAGGCAAGTTTTGAGTATTCCTTTAACTAGG-TTTCATAATTTAAGGTT  949
      |||||| ||||||||||||||||||||||||| |||||||||||| ||||
seq2  ATAGGC-AGTTTTGAGTATTCCTTTAACTAGGTTTTCATAATTTAGGGTT  949

seq1  AAAGAAAAGAAACTAAGTCCATTCTGAAAAGTTGTTGGCTGTATTTCAAA  999
      |||| ||||||||||||||||||||| |||||||| ||||||||||||||
seq2  AAAG-AAAGAAACTAAGTCCATTCTG-AAAGTTGTGGGCTGTATTTCAAA  997

seq1  CAATCCATTATAACTTCAAACTAATATTCCCCCC-TTGGCACAATGTATA  1048
      ||||||||||| ||||| |||| ||||||||||| ||||||| |||||||
seq2  CAATCCATTAT-ACTTC-AACT-ATATTCCCCCCTTTGGCAC-ATGTATA  1043

seq1  TCTTAATATTAATTTTTGGAATTGAATTTTTTGGTGACTTCTTCTTATTC  1098
      || ||||||  |||||| | |||| |||||||||||||||| ||||| ||
seq2  TC-TAATAT--ATTTTT-GCATTG-ATTTTTTGGTGACTTCCTCTTA-TC  1087

seq1  ATATGAGGCTCTAGTACAAGAG-CAGGAATGG  1129
      |||||| |||||||||| |||| |||||||||
seq2  ATATGA-GCTCTAGTAC-AGAGCCAGGAATGG  1117