BAC Information

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BAC

Clone NameB6Ng01-211C18
Chromosome6 (Build37)
Map Location 83,271,810 - 83,465,613
singlet/doubletdoublet
Overlap geneMobk1b, Bola3, D230004J03Rik, Dguok, Actg2
Upstream geneTacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2
Downstream geneStambp, LOC664956, Clec4f, Cd207, Vax2os2, Vax2os1, Vax2, Atp6v1b1, 1700124L16Rik, Ankrd53, Tex261, LOC665004, Nagk, Paip2b, LOC384450, LOC622683, LOC380687, LOC665098, LOC676366, Zfml, Dysf, LOC665114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211C18.bB6Ng01-211C18.g
ACCGA029321GA029322
length1,2061,147
definitionB6Ng01-211C18.b B6Ng01-211C18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,464,459 - 83,465,613)(83,271,810 - 83,272,946)
sequence
gaattcactgtgtaagccagatgggccttgaactcataaagatctgccta
cctctgccacccgagtgatagaattaaaggtttgtgctaccatgccagtt
attatttttttaaaaattaaaaaaaaaagaatgtgacaatgctaaagtgt
cattaaacttttaaaatggtttgaagagggactgggaaatggctcagtcg
gcagggtacttgctgagagcctgagtccctggcacccacgcacaaaagca
gatggagcacaactgtggtcccagcactagggaggagaaaacaggcaaac
tcctagagctcaaagcctgaccaacctaactgaatcagtgaatctgtata
caatgagaaatcttgtatctcaggagataaggtgaagagaaagtgaggaa
gataccagatattacctctgtcattcacacacatgcaagcatacaagtga
acattcatccatgtatacagcacacacacacacacacacacacacacaca
cacacacgcctgattggaaaaagagatggaaagttccagagagggaatgt
gtggccatagggatggctgtcacttcaaactctcaggaacattctctaga
ccttgacgaggtaactctgatctactgaccactgtgattgcagtgtcccc
tatgatgcttctcatgatgacaattaatctcagggaacttaatggaaagg
ggtctcatttgtctggtgacactcctggcttctggtcttcaaatactcag
agagatctctcaaggatttctggggtctttattgttagtagttttggttt
tttgtttgtttgtctgtttttttaagaattgagggctttaaaaaacttaa
aaaaaaaaaaagcaacccaggcatagtgggcacaggccttttaatccaac
actttgggaaggcagaagttaggcaagattttcttgagttttgaagccag
ttcttgtctcctacagtggagttccagggacaagccaaagttgacattag
ttagactctttgttttgaaaagggatttttttttaaagtggcctgctaac
caaggacttgaaggacctgaagtttcacttccttcagaatcttgcattga
agagagaaccttgaaccgggagtaagctgattcctcagaactttcaacag
gaggtatttcctccagccttgtttttaccgttcacccacactcgacagtc
cccaca
gaattcaggttctatttagcacccacatgagcagctcacaactgcccgga
ggaagggacttcagctcaaggggcatccaacccctagagcctctgcaggc
acctaactcctgcacgtacataatttaaaataataagataaaatcacaca
cacacacacacacacacacacacacacacacacacacacagcattaggct
tcaaaaagcactttggtatttgccttcctataaggaggccaggtttttgg
atggctggtttcattttccttcactttccccctggcttattccagcctca
tcaggctggcctttttctttttttcagttctcctttcagtagcaacatag
aaaacccctgcttgcttcaaagctgttgcatgtgggcttggctctgagca
gtgcccatcacccacatcctgcactggactatctcaacttctgagggctt
agcttcattgacacttacattttccagtttttgttctgctttgtttgttt
gtttgtatgattgttcgtttttaagatagggccttaataatgtagctctt
gctgtgcctgcttcttcaatactggggtaaaagttgtgtgtgttatcatg
cctagcctggttctggttttatatgtacacacacacacacatgcacacac
gcacacacacatatatatatgtacatatatatatatatatatgtatatac
atacacacacacatatatatatatatttggggtatgtcatcacgtgtatc
tggaagtcagaggatagcttgtaggagtcatttctctccttccacttggg
tcctggagatcaattgcaggctgttaagcttggcagtaaatgtcagaaat
ttgcctgtcactctcttttgttttgttttgtttttgagacaggtttcttc
tatgtagctctggcttatcctggaactcactctatagaccaggatggcct
caaactcagaaatccacctgcttctgctctcccaagtgcctgggattaaa
gcatgttgcaacactgcctcggctgcatgccatccttttactaataggcc
aggactaatctctgttaatgttccaaattcctagtgtatgtgtcctggca
aggtgagattcagcctattttgtataccctcctgtcatctctcaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_83464459_83465613
seq2: B6Ng01-211C18.b_47_1252 (reverse)

seq1  TGTGGGGGCTGTGGAGTGTGGTGGA--GGTAAACA-AAGGCTGG----GA  43
      ||||||| |||| ||||||||  ||  |||||| | ||||||||     |
seq2  TGTGGGGACTGTCGAGTGTGGGTGAACGGTAAAAACAAGGCTGGAGGAAA  50

seq1  TA-CTTCTGTTGAA--GTCTGAG--ATCAGCCTACTCC--GGTCAGGTCT  86
      || || ||||||||   ||||||  |||||| ||||||  | ||| |  |
seq2  TACCTCCTGTTGAAAGTTCTGAGGAATCAGCTTACTCCCGGTTCAAGGTT  100

seq1  CTC-CTTTCATGC-AGGTTCTGA--GGAGTGAA--CTCAGGT-CTTC-AG  128
      ||| |||  |||| || ||||||  | ||||||   |||||| |||| ||
seq2  CTCTCTTCAATGCAAGATTCTGAAGGAAGTGAAACTTCAGGTCCTTCAAG  150

seq1  T-CTTGGTTGGCAGG-CACTTTAAAAAAA---TCCTTCTCAAAACAA--G  171
      | ||||||| ||||| |||||||||||||    |||| |||||||||   
seq2  TCCTTGGTTAGCAGGCCACTTTAAAAAAAAATCCCTTTTCAAAACAAAGA  200

seq1  GTCTTACT-ATGTC-ACTTTGGC-TGT-CCTGGAACT-CACTGT-GGAGA  215
      |||| ||| ||||| |||||||| ||| ||||||||| |||||| |||||
seq2  GTCTAACTAATGTCAACTTTGGCTTGTCCCTGGAACTCCACTGTAGGAGA  250

seq1  CA--GACTGGCTTC-AAACTCA--GAAATC-TGCCT-ACCTCTGCCT--C  256
      ||   ||||||||| |||||||   ||||| ||||| || |||||||  |
seq2  CAAGAACTGGCTTCAAAACTCAAGAAAATCTTGCCTAACTTCTGCCTTCC  300

seq1  CCAAGTGTGGGATT-AAAGGCCTGTG-CCACTATGCCT-GGTTGC-TTTT  302
      | |||||| ||||| ||||||||||| ||||||||||| |||||| ||||
seq2  CAAAGTGTTGGATTAAAAGGCCTGTGCCCACTATGCCTGGGTTGCTTTTT  350

seq1  TTTTTTTTAAGTTTTT--AAGCCCTCAATTCTTAAAAAAACAGACAAACA  350
      ||||||||||||||||  ||||||||||||||||||||||||||||||||
seq2  TTTTTTTTAAGTTTTTTAAAGCCCTCAATTCTTAAAAAAACAGACAAACA  400

seq1  AACAAAAAACC-AAACTACTAACAATAAAGACCCCAGAAATCCTTGAGAG  399
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACCAAAACTACTAACAATAAAGACCCCAGAAATCCTTGAGAG  450

seq1  ATCTCTCTGAGTATTTGAAGACCAGAAGCCAGGAGTGTCACCAGACAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTGAGTATTTGAAGACCAGAAGCCAGGAGTGTCACCAGACAAAT  500

seq1  GAGACCCCTTTCCATTAAGTTCCCTGAGATTAATTGTCATCATGAGAAGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCCTTTCCATTAAGTTCCCTGAGATTAATTGTCATCATGAGAAGC  550

seq1  ATCATAGGGGACACTGCAATCACAGTGGTCAGTAGATCAGAGTTACCTCG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGGGGACACTGCAATCACAGTGGTCAGTAGATCAGAGTTACCTCG  600

seq1  TCAAGGTCTAGAGAATGTTCCTGAGAGTTTGAAGTGACAGCCATCCCTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTCTAGAGAATGTTCCTGAGAGTTTGAAGTGACAGCCATCCCTAT  650

seq1  GGCCACACATTCCCTCTCTGGAACTTTCCATCTCTTTTTCCAATCAGGCG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACATTCCCTCTCTGGAACTTTCCATCTCTTTTTCCAATCAGGCG  700

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTATACATGGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTATACATGGAT  750

seq1  GAATGTTCACTTGTATGCTTGCATGTGTGTGAATGACAGAGGTAATATCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCACTTGTATGCTTGCATGTGTGTGAATGACAGAGGTAATATCT  800

seq1  GGTATCTTCCTCACTTTCTCTTCACCTTATCTCCTGAGATACAAGATTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTTCCTCACTTTCTCTTCACCTTATCTCCTGAGATACAAGATTTC  850

seq1  TCATTGTATACAGATTCACTGATTCAGTTAGGTTGGTCAGGCTTTGAGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTATACAGATTCACTGATTCAGTTAGGTTGGTCAGGCTTTGAGCT  900

seq1  CTAGGAGTTTGCCTGTTTTCTCCTCCCTAGTGCTGGGACCACAGTTGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTTTGCCTGTTTTCTCCTCCCTAGTGCTGGGACCACAGTTGTGC  950

seq1  TCCATCTGCTTTTGTGCGTGGGTGCCAGGGACTCAGGCTCTCAGCAAGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTGCTTTTGTGCGTGGGTGCCAGGGACTCAGGCTCTCAGCAAGTA  1000

seq1  CCCTGCCGACTGAGCCATTTCCCAGTCCCTCTTCAAACCATTTTAAAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCGACTGAGCCATTTCCCAGTCCCTCTTCAAACCATTTTAAAAGT  1050

seq1  TTAATGACACTTTAGCATTGTCACATTCTTTTTTTTTTAATTTTTAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACACTTTAGCATTGTCACATTCTTTTTTTTTTAATTTTTAAAAA  1100

seq1  AATAATAACTGGCATGGTAGCACAAACCTTTAATTCTATCACTCGGGTGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAACTGGCATGGTAGCACAAACCTTTAATTCTATCACTCGGGTGG  1150

seq1  CAGAGGTAGGCAGATCTTTATGAGTTCAAGGCCCATCTGGCTTACACAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTAGGCAGATCTTTATGAGTTCAAGGCCCATCTGGCTTACACAGT  1200

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1206

seq1: chr6_83271810_83272946
seq2: B6Ng01-211C18.g_70_1216

seq1  GAATTCAGGTTCTATTTAGCACCCACATGAGCAGCTCACAACTGCCCGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTCTATTTAGCACCCACATGAGCAGCTCACAACTGCCCGGA  50

seq1  GGAAGGGACTTCAGCTCAAGGGGCATCCAACCCCTAGAGCCTCTGCAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGACTTCAGCTCAAGGGGCATCCAACCCCTAGAGCCTCTGCAGGC  100

seq1  ACCTAACTCCTGCACGTACATAATTTAAAATAATAAGATAAAATCACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAACTCCTGCACGTACATAATTTAAAATAATAAGATAAAATCACACA  150

seq1  CACACACACACACACACACACACACACACACACACACACAGCATTAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACAGCATTAGGCT  200

seq1  TCAAAAAGCACTTTGGTATTTGCCTTCCTATAAGGAGGCCAGGTTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAGCACTTTGGTATTTGCCTTCCTATAAGGAGGCCAGGTTTTTGG  250

seq1  ATGGCTGGTTTCATTTTCCTTCACTTTCCCCCTGGCTTATTCCAGCCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGTTTCATTTTCCTTCACTTTCCCCCTGGCTTATTCCAGCCTCA  300

seq1  TCAGGCTGGCCTTTTTCTTTTTTTCAGTTCTCCTTTCAGTAGCAACATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTGGCCTTTTTCTTTTTTTCAGTTCTCCTTTCAGTAGCAACATAG  350

seq1  AAAACCCCTGCTTGCTTCAAAGCTGTTGCATGTGGGCTTGGCTCTGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCTGCTTGCTTCAAAGCTGTTGCATGTGGGCTTGGCTCTGAGCA  400

seq1  GTGCCCATCACCCACATCCTGCACTGGACTATCTCAACTTCTGAGGGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATCACCCACATCCTGCACTGGACTATCTCAACTTCTGAGGGCTT  450

seq1  AGCTTCATTGACACTTACATTTTCCAGTTTTTGTTCTGCTTTGTTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCATTGACACTTACATTTTCCAGTTTTTGTTCTGCTTTGTTTGTTT  500

seq1  GTTTGTATGATTGTTCGTTTTTAAGATAGGGCCTTAATAATGTAGCTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTATGATTGTTCGTTTTTAAGATAGGGCCTTAATAATGTAGCTCTT  550

seq1  GCTGTGCCTGCTTCTTCAATACTGGGGTAAAAGTTGTGTGTGTTATCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCCTGCTTCTTCAATACTGGGGTAAAAGTTGTGTGTGTTATCATG  600

seq1  CCTAGCCTGGTTCTGGTTTTATATGTACACACACACACACATGCACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCTGGTTCTGGTTTTATATGTACACACACACACACATGCACACAC  650

seq1  GCACACACACATATATATATGTACATATATATATATATATATGTATATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACATATATATATGTACATATATATATATATATATGTATATAC  700

seq1  ATACACACACACATATATATATATATTT-GGGTATGTCATCACGTGTATC  749
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATACACACACACATATATATATATATTTGGGGTATGTCATCACGTGTATC  750

seq1  TGGAAGTCAGAGGATAGCTTGTAGGAGTCATTTCTCTCCTTCCACTTGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAGAGGATAGCTTGTAGGAGTCATTTCTCTCCTTCCACTTGGG  800

seq1  TCCTGGAGATCAATTGCAGGCTGTTAAGCTTGGCAGTAAATGTCAGAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGATCAATTGCAGGCTGTTAAGCTTGGCAGTAAATGTCAGAAAT  850

seq1  TTGCCTGTCACTCTCTTTTGTTTTGTTTTGTTTTTGAGACAGGGTTTCTC  899
      ||||||||||||||||||||||||||||||||||||||||||| ||  ||
seq2  TTGCCTGTCACTCTCTTTTGTTTTGTTTTGTTTTTGAGACAGGTTTCTTC  900

seq1  TATGTAGCCCTGGC-TATCCTGGAACTCACTCTATAGACCAGGATGGCCT  948
      |||||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTCTGGCTTATCCTGGAACTCACTCTATAGACCAGGATGGCCT  950

seq1  CAAACTCAGAAATCCACCTGCCTCTGC-CTCCCAAGTG-CTGGGATTAAA  996
      ||||||||||||||||||||| ||||| |||||||||| |||||||||||
seq2  CAAACTCAGAAATCCACCTGCTTCTGCTCTCCCAAGTGCCTGGGATTAAA  1000

seq1  GGCATGTGCCACCACTG-CTCGGCTGCATGCCA--CTCTTAC-ACAAGGC  1042
       ||||||  || ||||| |||||||||||||||  || |||| |  ||||
seq2  -GCATGTTGCAACACTGCCTCGGCTGCATGCCATCCTTTTACTAATAGGC  1049

seq1  CCAGACTAAATCTCTG-TAATGTTCCAA--TTCTAGTGTATGTG--CTGC  1087
      |  |||| |||||||| |||||||||||  | ||||||||||||  ||| 
seq2  CAGGACT-AATCTCTGTTAATGTTCCAAATTCCTAGTGTATGTGTCCTGG  1098

seq1  CAAAGTGAGTATTCAGTCTATTTGTTAT-CTCTCCTGTCAATCTCCCAAT  1136
      ||| ||||| |||||| ||||||  ||| | |||||||| ||||| ||||
seq2  CAAGGTGAG-ATTCAGCCTATTTTGTATACCCTCCTGTC-ATCTCTCAAT  1146

seq1  G  1137
      |
seq2  G  1147