BAC Information

Click to search

BAC

Clone NameB6Ng01-212E16
Chromosome6 (Build37)
Map Location 148,300,165 - 148,462,023
singlet/doubletdoublet
Overlap geneTmtc1, 1110033J19Rik
Upstream geneEG622129, Ccdc91, LOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2
Downstream geneEG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik, 4833442J19Rik, C730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212E16.bB6Ng01-212E16.g
ACCGA030125GA030126
length6111,104
definitionB6Ng01-212E16.b B6Ng01-212E16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,461,413 - 148,462,023)(148,300,165 - 148,301,265)
sequence
gaattccagaagtttccttttcaggccgtctcagagcatacaggatatag
tgagccaggcttgcagagttcagatgactgtcctggaatacccgaggcac
tgcttcaaagttactgttccaattgctgaccttgaccttggggaaagggg
gctggggactgacagcagttcataatctatgaaatccacagtgtgcaggg
aggtacaggggctgaactgtggccaagatatcaaggggcccagagaatct
gagccctagattaggaaggagaactttctatgcatctcccacaattcttg
gtgtgtgaccccttagtagctagggtccaaatgctttctcctagtttttt
tttttttcatttctacttcctgtttattattattttttaatggtctattt
taagggtttcaatccgatgttcttgagctgtgctgttcttcataatattg
tgggaaatttagaaaatttcaaccttgttctgcatacttttttagtcacc
cgctttcagtttgaagatacagtccttcatggtgggggtggggttgcccg
ggttgggggcaggaggaacagtggggagatgcagtggggggaaatggcgg
tgggagtggaa
gaattcaccatggacacataagggcatgcaatgaatagactgtgcacatg
caaggatgcgggctggggaggagctactgaggtactgaggtggcccatgc
tagttcatcaatctgtgtgctcagatgcccactgacttttgtgaggaagg
ggaaccttttcctaatgcactcaaaatatgttaaaggacctatgatggac
ctaaacatcatgtggcacccatgcctcatggttgcagcttgctcctttat
gaagagatgcttatatgtagcagaggccctggcctcttactggttaatac
tcctgatgtagtaatgactttttacacagagacttgtttactctagcttt
catcctcttagaaccagctttcatttgctgaagagactagtatcacatgc
catcactaaatttccagtcactgggccatgggtaaagttaccaaacaaag
aatagcactgttttttcccctccttcagaggtgtttcccttacacattca
gttcaatgccttccctttctttctttcctttgttctcatgagaaacaatc
tttttgtctggctgtcctagacctcacttttgtaaaccaggctaaccctg
aactcgacccacctgactctgtcttctgggtgctaaaattaaaggcatga
gccatcacacccaggcagcccaatgctctgtgtagtgccaattactgtgt
cactctcaagttttaacttttctaaacatttaaattgctatgctatcttt
ataaacactgctgattgcaaggtctgatttttaacaaactgtatcctccc
tatactaaattgcatgaaaattaactgtctttctgaatgttatccagtgt
aacgttttccatacacaggaggtttttatacatggggctgggactgtcct
caaagatggtgaactatttccgatctgcctagcacttgtctttcagcact
aaactggagaaagccctggaaactttagaagggaaagtcatcctaagaca
ttcatacacagctgaactggcagtgcaatcacgtgcttatggctagtcaa
cctttagtttcccacagaattaaagaaaaaattagtcggcttgctaagga
tctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_148461413_148462023
seq2: B6Ng01-212E16.b_44_654 (reverse)

seq1  TTCCACTCCCACCGCCATTTCCCCCCACTGCATCTCCCCACTGTTCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCCCACCGCCATTTCCCCCCACTGCATCTCCCCACTGTTCCTCC  50

seq1  TGCCCCCAACCCGGGCAACCCCACCCCCACCATGAAGGACTGTATCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCAACCCGGGCAACCCCACCCCCACCATGAAGGACTGTATCTTCA  100

seq1  AACTGAAAGCGGGTGACTAAAAAAGTATGCAGAACAAGGTTGAAATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAAAGCGGGTGACTAAAAAAGTATGCAGAACAAGGTTGAAATTTTC  150

seq1  TAAATTTCCCACAATATTATGAAGAACAGCACAGCTCAAGAACATCGGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCCCACAATATTATGAAGAACAGCACAGCTCAAGAACATCGGAT  200

seq1  TGAAACCCTTAAAATAGACCATTAAAAAATAATAATAAACAGGAAGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCCTTAAAATAGACCATTAAAAAATAATAATAAACAGGAAGTAGA  250

seq1  AATGAAAAAAAAAAAAACTAGGAGAAAGCATTTGGACCCTAGCTACTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAAAAAAAAAACTAGGAGAAAGCATTTGGACCCTAGCTACTAAG  300

seq1  GGGTCACACACCAAGAATTGTGGGAGATGCATAGAAAGTTCTCCTTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACACACCAAGAATTGTGGGAGATGCATAGAAAGTTCTCCTTCCTA  350

seq1  ATCTAGGGCTCAGATTCTCTGGGCCCCTTGATATCTTGGCCACAGTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGCTCAGATTCTCTGGGCCCCTTGATATCTTGGCCACAGTTCAG  400

seq1  CCCCTGTACCTCCCTGCACACTGTGGATTTCATAGATTATGAACTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGTACCTCCCTGCACACTGTGGATTTCATAGATTATGAACTGCTGT  450

seq1  CAGTCCCCAGCCCCCTTTCCCCAAGGTCAAGGTCAGCAATTGGAACAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCCAGCCCCCTTTCCCCAAGGTCAAGGTCAGCAATTGGAACAGTA  500

seq1  ACTTTGAAGCAGTGCCTCGGGTATTCCAGGACAGTCATCTGAACTCTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAGCAGTGCCTCGGGTATTCCAGGACAGTCATCTGAACTCTGCA  550

seq1  AGCCTGGCTCACTATATCCTGTATGCTCTGAGACGGCCTGAAAAGGAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCTCACTATATCCTGTATGCTCTGAGACGGCCTGAAAAGGAAAC  600

seq1  TTCTGGAATTC  611
      |||||||||||
seq2  TTCTGGAATTC  611

seq1: chr6_148300165_148301265
seq2: B6Ng01-212E16.g_68_1171

seq1  GAATTCACCATGGACACATAAGGGCATGCAATGAATAGACTGTGCACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATGGACACATAAGGGCATGCAATGAATAGACTGTGCACATG  50

seq1  CAAGGATGCGGGCTGGGGAGGAGCTACTGAGGTACTGAGGTGGCCCATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGATGCGGGCTGGGGAGGAGCTACTGAGGTACTGAGGTGGCCCATGC  100

seq1  TAGTTCATCAATCTGTGTGCTCAGATGCCCACTGACTTTTGTGAGGAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCATCAATCTGTGTGCTCAGATGCCCACTGACTTTTGTGAGGAAGG  150

seq1  GGAACCTTTTCCTAATGCACTCAAAATATGTTAAAGGACCTATGATGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTTTTCCTAATGCACTCAAAATATGTTAAAGGACCTATGATGGAC  200

seq1  CTAAACATCATGTGGCACCCATGCCTCATGGTTGCAGCTTGCTCCTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACATCATGTGGCACCCATGCCTCATGGTTGCAGCTTGCTCCTTTAT  250

seq1  GAAGAGATGCTTATATGTAGCAGAGGCCCTGGCCTCTTACTGGTTAATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGCTTATATGTAGCAGAGGCCCTGGCCTCTTACTGGTTAATAC  300

seq1  TCCTGATGTAGTAATGACTTTTTACACAGAGACTTGTTTACTCTAGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGATGTAGTAATGACTTTTTACACAGAGACTTGTTTACTCTAGCTTT  350

seq1  CATCCTCTTAGAACCAGCTTTCATTTGCTGAAGAGACTAGTATCACATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTAGAACCAGCTTTCATTTGCTGAAGAGACTAGTATCACATGC  400

seq1  CATCACTAAATTTCCAGTCACTGGGCCATGGGTAAAGTTACCAAACAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTAAATTTCCAGTCACTGGGCCATGGGTAAAGTTACCAAACAAAG  450

seq1  AATAGCACTGTTTTTTCCCCTCCTTCAGAGGTGTTTCCCTTACACATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCACTGTTTTTTCCCCTCCTTCAGAGGTGTTTCCCTTACACATTCA  500

seq1  GTTCAATGCCTTCCCTTTCTTTCTTTCCTTTGTTCTCATGAGAAACAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGCCTTCCCTTTCTTTCTTTCCTTTGTTCTCATGAGAAACAATC  550

seq1  TTTTTGTCTGGCTGTCCTAGACCTCACTTTTGTAAACCAGGCTAACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCTGGCTGTCCTAGACCTCACTTTTGTAAACCAGGCTAACCCTG  600

seq1  AACTCGACCCACCTGACTCTGTCTTCTGGGTGCTAAAATTAAAGGCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGACCCACCTGACTCTGTCTTCTGGGTGCTAAAATTAAAGGCATGA  650

seq1  GCCATCACACCCAGGCAGCCCAATGCTCTGTGTAGTGCCAATTACTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCACACCCAGGCAGCCCAATGCTCTGTGTAGTGCCAATTACTGTGT  700

seq1  CACTCTCAAGTTTTAAC-TTTCTAAACATTTAAATTGCTATGCTATCTTT  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CACTCTCAAGTTTTAACTTTTCTAAACATTTAAATTGCTATGCTATCTTT  750

seq1  ATAAACACTGCTGATTGCAAGGTCTGATTTTTAACAAACTGTATCCTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACTGCTGATTGCAAGGTCTGATTTTTAACAAACTGTATCCTCCC  800

seq1  TATACTAAATTGCATG-AAACTAACTGTC-TTCTGAATGTTATCCAGTGT  847
      |||||||||||||||| ||| |||||||| ||||||||||||||||||||
seq2  TATACTAAATTGCATGAAAATTAACTGTCTTTCTGAATGTTATCCAGTGT  850

seq1  AACG-TTTCCATACACAGGAGGTTTTTATACATGGGGCT-GGACTGTCCT  895
      |||| |||||||||||||||||||||||||||||||||| ||||||||||
seq2  AACGTTTTCCATACACAGGAGGTTTTTATACATGGGGCTGGGACTGTCCT  900

seq1  CAAAGATGGTG-ACTA-TTCCGATCTGCCTAGCACTTGTCTTTCAGCACT  943
      ||||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  CAAAGATGGTGAACTATTTCCGATCTGCCTAGCACTTGTCTTTCAGCACT  950

seq1  AAACTGGAG-AAGCCCTGGGAAACTTAGAAGGGAAAGTCATCCCTAAGGA  992
      ||||||||| ||||||||| ||  ||||||||||||||||| ||||| ||
seq2  AAACTGGAGAAAGCCCTGGAAACTTTAGAAGGGAAAGTCAT-CCTAA-GA  998

seq1  CA-TCATACACAGCTGGAACTGGGCAGTGCAATCACGTGCTAATGGCTAG  1041
      || |||||||||||| ||||| ||||||||||||||||||| ||||||||
seq2  CATTCATACACAGCT-GAACT-GGCAGTGCAATCACGTGCTTATGGCTAG  1046

seq1  GCCAAACCTTAA--TTTCCACAGAATTTAAAGAAAAAATTAGTTTGGTTT  1089
       |  |||||| |  || |||||||| ||||||||||||||||  | |  |
seq2  TC--AACCTTTAGTTTCCCACAGAA-TTAAAGAAAAAATTAG--TCGGCT  1091

seq1  TGCTAA-GATCTT  1101
      |||||| ||||||
seq2  TGCTAAGGATCTT  1104