BAC Information

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BAC

Clone NameB6Ng01-214G02
Chromosome6 (Build37)
Map Location 114,218,588 - 114,383,712
singlet/doubletdoublet
Overlap geneSlc6a1, Hrh1
Upstream geneMtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13, Atp2b2, Slc6a11, LOC666491
Downstream geneAtg7, Vgll4, 1500001M20Rik, LOC100043420, Syn2, Timp4, Pparg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214G02.bB6Ng01-214G02.g
ACCGA031643GA031644
length1,064460
definitionB6Ng01-214G02.b B6Ng01-214G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,218,588 - 114,219,614)(114,383,247 - 114,383,712)
sequence
gaattcagtgaaacgcatacagggctggttagaggatttggagtgggcat
ttagttgggctttgaaggataattaggagtttgctctgaccaagaagaga
gtcctgagcattcctggaaagggaaggagtggctgggctaaatcccagga
gaggagatgtcacagtgtgtctgggaggcgctgggagactgggacaggag
aaacagagaggatgtgcctaaatctctgtccctcccctccccctgtggtc
tcagcctgccctgccactgggtcagcagcactgacccagtgctgacctca
gctcttgagcactaattccccactggtaaacttcacctcaggctcttcct
caaaaccagcgtgagttgtctgaacttcattaccctcctccattggagca
gagtacagggagagggcagccatcattccagcagtagaatgttctgacag
gggaagctggacaagggaaatggggatcaggggatcatctggatcccaga
aaagggagagcaggctgggccgctgagcaagcaaatgggacattcaggtg
cattgggtggacctaggcccaatgacaaggcaacggctcccccaggaaag
caaagccagtgttgagagtcgtcaggaggggctgatcccttgtcactagg
gtgggtcactctggatcagtgcccagttcacgcttcacactgaagggcag
caactgctaccacagaatctcatccctcaggatgatgcagaatggccatg
cccattttcacagatgagttaaaccaaggccctagccaggttaaatctag
tattcctggatgcccaccactagaaaaggaagcagttaaagactatgacc
tcagcaatagataaatcccatttcaaaaagactacatgcacccataggga
tccttcttccaactctctttgaaggtgaaccagtttggctctttggtatc
ccctgttgatcccacagaccctctctttgtcctggggtctttggaaggaa
ggcacctgtgtggatggtttctttgtcacccaactttcctgacaaatgac
tttttcaagctggg
ttcagataaggtggtttcttacagctcagagagccctgggggattcttca
gtaccctgaactgtgttgacataatacaacagttccagaaaggcaacctg
caggcacaaggtcagaacctctagacccctggatggatgtgacccatcac
catggcagtcacttggttctgataagccagggcaggggggtgctaggttg
ctgtctttgccttgggtgggctggggtagaatttctagcctgaacagggt
cggcaagtaagcagggtggctgggagaacgcatggtaggcaggcctatct
gtggcctgctttggttgtctaatttcctacatagggctcttgatgctcaa
gtcatatggaagggtgggtcttggatctgatcttcaagcagctcgggcaa
atgagactctttccagaaagaaaacccattccaaagagatggttcggggg
gtgggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_114218588_114219614
seq2: B6Ng01-214G02.b_35_1098

seq1  GAATTCAGTGAAACGCATACAGGGCTGGTTAGAGGATTTGGAGTGGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAAACGCATACAGGGCTGGTTAGAGGATTTGGAGTGGGCAT  50

seq1  TTAGTTGGGCTTTGAAGGATAATTAGGAGTTTGCTCTGACCAAGAAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGGCTTTGAAGGATAATTAGGAGTTTGCTCTGACCAAGAAGAGA  100

seq1  GTCCTGAGCATTCCTGGAAAGGGAAGGAGTGGCTGGGCTAAATCCCAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGAGCATTCCTGGAAAGGGAAGGAGTGGCTGGGCTAAATCCCAGGA  150

seq1  GAGGAGATGTCACAGTGTGTCTGGGAGGCGCTGGGAGACTGGGACAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGATGTCACAGTGTGTCTGGGAGGCGCTGGGAGACTGGGACAGGAG  200

seq1  AAACAGAGAGGATGTGCCTAAATCTCTGTCCCTCCCCTCCCCCTGTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGAGGATGTGCCTAAATCTCTGTCCCTCCCCTCCCCCTGTGGTC  250

seq1  TCAGCCTGCCCTGCCACTGGGTCAGCAGCACTGACCCAGTGCTGACCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGCCCTGCCACTGGGTCAGCAGCACTGACCCAGTGCTGACCTCA  300

seq1  GCTCTTGAGCACTAATTCCCCACTGGTAAACTTCACCTCAGGCTCTTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAGCACTAATTCCCCACTGGTAAACTTCACCTCAGGCTCTTCCT  350

seq1  CAAAACCAGCGTGAGTTGTCTGAACTTCATTACCCTCCTCCATTGGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCAGCGTGAGTTGTCTGAACTTCATTACCCTCCTCCATTGGAGCA  400

seq1  GAGTACAGGGAGAGGGCAGCCATCATTCCAGCAGTAGAATGTTCTGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAGGGAGAGGGCAGCCATCATTCCAGCAGTAGAATGTTCTGACAG  450

seq1  GGGAAGCTGGACAAGGGAAATGGGGATCAGGGGATCATCTGGATCCCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCTGGACAAGGGAAATGGGGATCAGGGGATCATCTGGATCCCAGA  500

seq1  AAAGGGAGAGCAGGCTGGGCCGCTGAGCAAGCAAATGGGACATTCAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGCAGGCTGGGCCGCTGAGCAAGCAAATGGGACATTCAGGTG  550

seq1  CATTGGGTGGACCTAGGCCCAATGACAAGGCAACGGCTCCCCCAGGAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGTGGACCTAGGCCCAATGACAAGGCAACGGCTCCCCCAGGAAAG  600

seq1  CAAAGCCAGTGTTGAGAGTCGTCAGGAGGGGCTGATCCCTTGTCACTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCAGTGTTGAGAGTCGTCAGGAGGGGCTGATCCCTTGTCACTAGG  650

seq1  GTGGGTCACTCTGGATCAGTGCCCAG-TCACGCTTCACACTGAAGGGCAG  699
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGGGTCACTCTGGATCAGTGCCCAGTTCACGCTTCACACTGAAGGGCAG  700

seq1  CAACTGCTACCACAGAATCTCAT-CCTCAGGATGATGCAGAATGGCCATG  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAACTGCTACCACAGAATCTCATCCCTCAGGATGATGCAGAATGGCCATG  750

seq1  CCCA-TTTCACAGATGAG-TAAACCAAGG-CCTAGCCAGGTTAAATCTAG  795
      |||| ||||||||||||| |||||||||| ||||||||||||||||||||
seq2  CCCATTTTCACAGATGAGTTAAACCAAGGCCCTAGCCAGGTTAAATCTAG  800

seq1  TA-TCCTGGATG-CCACCACTAGAAAAGGAAGCAGTTAAAGACTATGACC  843
      || ||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGGATGCCCACCACTAGAAAAGGAAGCAGTTAAAGACTATGACC  850

seq1  TCAGCAATAGATAAA-CCCATTTC-AAAAGACTACATGCA-CCATAGGGA  890
      ||||||||||||||| |||||||| ||||||||||||||| |||||||||
seq2  TCAGCAATAGATAAATCCCATTTCAAAAAGACTACATGCACCCATAGGGA  900

seq1  TCCTTC-TCCAACTCCCTT--GAGGTG-ACCAGTT--GC-CCTTGGCAT-  932
      |||||| |||||||| |||   ||||| |||||||  || | |||| || 
seq2  TCCTTCTTCCAACTCTCTTTGAAGGTGAACCAGTTTGGCTCTTTGGTATC  950

seq1  CCCTG-TGATCCCACAGACCC-CTC-TTGTCCTGGGTTC--TGGA--GGA  975
      ||||| ||||||||||||||| ||| |||||||||| ||  ||||  | |
seq2  CCCTGTTGATCCCACAGACCCTCTCTTTGTCCTGGGGTCTTTGGAAGGAA  1000

seq1  GGCAC---TGTGG--TGTTTCCT--GCACCCA--CATCCTG-CATA-GAC  1014
      |||||   |||||   ||||| |   ||||||    ||||| || | |||
seq2  GGCACCTGTGTGGATGGTTTCTTTGTCACCCAACTTTCCTGACAAATGAC  1050

seq1  -TTTTCAAGCTGGG  1027
       |||||||||||||
seq2  TTTTTCAAGCTGGG  1064

seq1: chr6_114383247_114383712
seq2: B6Ng01-214G02.g_65_530 (reverse)

seq1  CCACCCCCACCCCCCGAACCATCTCTTTGGAATGGGTTTTCTTTCTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACCCCCCGAACCATCTCTTTGGAATGGGTTTTCTTTCTGGAA  50

seq1  AGAGTCTCATTTGCCCGAGCTGCTTGAAGATCAGATCCAAGACCCACCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTCATTTGCCCGAGCTGCTTGAAGATCAGATCCAAGACCCACCCT  100

seq1  TCCATATGACTTGAGCATCAAGAGCCCTATGTAGGAAATTAGACAACCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATGACTTGAGCATCAAGAGCCCTATGTAGGAAATTAGACAACCAA  150

seq1  AGCAGGCCACAGATAGGCCTGCCTACCATGCGTTCTCCCAGCCACCCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCCACAGATAGGCCTGCCTACCATGCGTTCTCCCAGCCACCCTGC  200

seq1  TTACTTGCCGACCCTGTTCAGGCTAGAAATTCTACCCCAGCCCACCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCCGACCCTGTTCAGGCTAGAAATTCTACCCCAGCCCACCCAAG  250

seq1  GCAAAGACAGCAACCTAGCACCCCCCTGCCCTGGCTTATCAGAACCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGACAGCAACCTAGCACCCCCCTGCCCTGGCTTATCAGAACCAAGT  300

seq1  GACTGCCATGGTGATGGGTCACATCCATCCAGGGGTCTAGAGGTTCTGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATGGTGATGGGTCACATCCATCCAGGGGTCTAGAGGTTCTGAC  350

seq1  CTTGTGCCTGCAGGTTGCCTTTCTGGAACTGTTGTATTATGTCAACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGCCTGCAGGTTGCCTTTCTGGAACTGTTGTATTATGTCAACACAG  400

seq1  TTCAGGGTACTGAAGAATCCCCCAGGGCTCTCTGAGCTGTAAGAAACCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTACTGAAGAATCCCCCAGGGCTCTCTGAGCTGTAAGAAACCAC  450

seq1  CTTATCTGAAGAATTC  466
      ||||||||||||||||
seq2  CTTATCTGAAGAATTC  466