BAC Information

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BAC

Clone NameB6Ng01-215M20
Chromosome6 (Build37)
Map Location 32,894,096 - 33,033,864
singlet/doubletdoublet
Overlap geneChchd3, LOC100039118
Upstream gene1700012A03Rik, Plxna4
Downstream geneGm1401, Exoc4, Lrguk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215M20.bB6Ng01-215M20.g
ACCGA032665GA032666
length1,1211,063
definitionB6Ng01-215M20.b B6Ng01-215M20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,032,729 - 33,033,864)(32,894,096 - 32,895,144)
sequence
gaattcctggtgattgtggtgcccacacctattacagaaaacccctagac
caagagctgtgtctttggtatgctactcacatttgtgacttaaattttag
gctacttggtaaagctcatcttctctagggacagatgaagaaattagtaa
tcagttgtaattttattctttattacatgatggcatcgtacagagagggc
caggaacccttaacctgagattggaggtgagtgtttttaacaagaggata
tattatttgatcagaaaaaagaaaaaaaaaaccactaggttgaattttga
aggataaaagaagtgacataattgaggagaacttttttaaaagtatgttt
ccacaaacactgagcatatttaaagtattaccagagtgtttaaattctct
gccggcccacaccccaagaatgtctgtgcaactctggtaccaatttagct
ccaccccctcccccccaaactaagccacatcaaagaaacattcaagtcaa
agaagtggctgctgtgatgttaatctttgtcaccttgactggctttagaa
tcacctagtagacacacctttgaatgtatgtgagagagcatttccagcat
gaggacagaagacccaccctgattatggatggcattatcatatggggagc
gggctgggctaaatgaaagaggaagtgagttgagcgcctgcaatcctcct
cacactcttgcctcctcgcctaccccacaatgactgatggtagccatgag
cctctcaaactgttccccaaactaactctccttcccttcagtgtttctta
aggccatctgatcagaacagtgagaaaagtaaccaatacgcctgtgtaca
ggtgttacctgcacagcaagactcccaattatctcctaagtgggcgctgc
gtttttggaaagtgtgttttatttgcatttgtgatgttatatcatttaag
ctttatgtcaatatctttttagggaaactagcttggggggggtatgattt
cacttatgctcccactcttgcaatgttaagaacttacccctcagtcacat
gactagagtagattagagagcaagacacagtccaaggcaaaggttacatc
tcagattatagccagccgatc

gaattccacacaactgacttaattcccccctctctcctctgtttgtctgt
ctctctgtctctttctctctctgtgtctcactctctctctgtctcacaca
caaacacaaacacacaaacacacaaacacgcctattacccaaaatgaact
actgctatctactaaaattaaaataattttgctatgatcaaatgactcca
acttctttaaacatgataaacaggaaatagaacaatgggagagaccaaaa
gggagaattaaaggagaattacaggaaaattcatgagcaatccagaaggc
cagcagtgctctgaggagcaaggagtcactgtacagcactgacttaaggc
acagaggttttagaaaggagagagggaggggtgagaggagaagagagaga
ggacagacagcaagcaaaacaaaatttatcttagaaaaaaaaaaaaaaaa
gaaaagtcactcaggtaaatattcaaactcagctccaagaccggctccta
gagccagacacacaaagtgcacataatactttctgaagcaacactggaga
tgggagaaaaccccacaacactggcatagtgtgctttttcccatgtccca
tgagattattcaaataatctacataaataccagttagcaattatgctgtg
aacactaaaaattctataagggataatcctcagagtgcagatttacatag
gtcagataaacattttttactaaaaatgataaaacagaaccatctgtatg
cacacactttcaaacatccattttaataattataagctggataaagacca
gacacattattattacatcaattacgacaaaatatctgatgattactata
cttaggccttggatagatacacttcagctaaccctttaggggaatgattc
cattatatcagaaatctttagcttagctcatataatttttcaaaggtaat
agagaaatttatgattattccaatcatctttgtaacacaccttgaatctg
aggaatgctatgaaccaacatgcctggcaccgtagaagctcttgaccaag
acctaattaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_33032729_33033864
seq2: B6Ng01-215M20.b_46_1166 (reverse)

seq1  GATCTGGCTGGCTTATAAATCTGAGAATGTTACCTTTTGCCTTGG-CTGT  49
      |||| ||||||| ||| |||||||| |||| ||| |||||||||| ||||
seq2  GATC-GGCTGGC-TAT-AATCTGAG-ATGTAACC-TTTGCCTTGGACTGT  45

seq1  GTCTTGCCTTCTCTTATCTAACTCTAGTCATGGTGACTGAGGGGGTAAGT  99
      |||||||  ||||| |||| ||||||||||| |||||||| |||||||||
seq2  GTCTTGC--TCTCTAATCT-ACTCTAGTCAT-GTGACTGA-GGGGTAAGT  90

seq1  --CTAACATTTGCAAGAGGTGGGGGGCATAAGTGGAAAATTCATA-CCCC  146
         ||||| |||||||||   ||| |||||||||   || ||||| ||||
seq2  TCTTAACA-TTGCAAGAG--TGGGAGCATAAGTG---AAATCATACCCCC  134

seq1  CCCAAGCTAGTTTTCCCTAAAAAGATATTGACATAAAGCTTAAAATGATA  196
      |||||||||| |||||||||||||||||||||||||||||| ||||||||
seq2  CCCAAGCTAG-TTTCCCTAAAAAGATATTGACATAAAGCTT-AAATGATA  182

seq1  TAACATCACAAATGCAAATAAAACACACTTTCCAAAAAACGCAGCGCCCA  246
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAACATCACAAATGCAAATAAAACACACTTTCC-AAAAACGCAGCGCCCA  231

seq1  CTTAGGAGATAATTGGGAGTCTTGCTGTGCAGGTAACACCTGTACACAGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGATAATTGGGAGTCTTGCTGTGCAGGTAACACCTGTACACAGG  281

seq1  CGTATTGGTTACTTTTCTCACTGTTCTGATCAGATGGCCTTAAGAAACAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTGGTTACTTTTCTCACTGTTCTGATCAGATGGCCTTAAGAAACAC  331

seq1  TGAAGGGAAGGAGAGTTAGTTTGGGGAACAGTTTGAGAGGCTCATGGCTA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGAAGGAGAGTTAGTTTGGGGAACAGTTTGAGAGGCTCATGGCTA  381

seq1  CCATCAGTCATTGTGGGGTAGGCGAGGAGGCAAGAGTGTGAGGAGGATTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAGTCATTGTGGGGTAGGCGAGGAGGCAAGAGTGTGAGGAGGATTG  431

seq1  CAGGCGCTCAACTCACTTCCTCTTTCATTTAGCCCAGCCCGCTCCCCATA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCGCTCAACTCACTTCCTCTTTCATTTAGCCCAGCCCGCTCCCCATA  481

seq1  TGATAATGCCATCCATAATCAGGGTGGGTCTTCTGTCCTCATGCTGGAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATGCCATCCATAATCAGGGTGGGTCTTCTGTCCTCATGCTGGAAA  531

seq1  TGCTCTCTCACATACATTCAAAGGTGTGTCTACTAGGTGATTCTAAAGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCTCACATACATTCAAAGGTGTGTCTACTAGGTGATTCTAAAGCC  581

seq1  AGTCAAGGTGACAAAGATTAACATCACAGCAGCCACTTCTTTGACTTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGTGACAAAGATTAACATCACAGCAGCCACTTCTTTGACTTGAA  631

seq1  TGTTTCTTTGATGTGGCTTAGTTTGGGGGGGAGGGGGTGGAGCTAAATTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTGATGTGGCTTAGTTTGGGGGGGAGGGGGTGGAGCTAAATTG  681

seq1  GTACCAGAGTTGCACAGACATTCTTGGGGTGTGGGCCGGCAGAGAATTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAGTTGCACAGACATTCTTGGGGTGTGGGCCGGCAGAGAATTTA  731

seq1  AACACTCTGGTAATACTTTAAATATGCTCAGTGTTTGTGGAAACATACTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTGGTAATACTTTAAATATGCTCAGTGTTTGTGGAAACATACTT  781

seq1  TTAAAAAAGTTCTCCTCAATTATGTCACTTCTTTTATCCTTCAAAATTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAAGTTCTCCTCAATTATGTCACTTCTTTTATCCTTCAAAATTCA  831

seq1  ACCTAGTGGTTTTTTTTTTCTTTTTTCTGATCAAATAATATATCCTCTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGTGGTTTTTTTTTTCTTTTTTCTGATCAAATAATATATCCTCTTG  881

seq1  TTAAAAACACTCACCTCCAATCTCAGGTTAAGGGTTCCTGGCCCTCTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAACACTCACCTCCAATCTCAGGTTAAGGGTTCCTGGCCCTCTCTG  931

seq1  TACGATGCCATCATGTAATAAAGAATAAAATTACAACTGATTACTAATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGATGCCATCATGTAATAAAGAATAAAATTACAACTGATTACTAATTT  981

seq1  CTTCATCTGTCCCTAGAGAAGATGAGCTTTACCAAGTAGCCTAAAATTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCTGTCCCTAGAGAAGATGAGCTTTACCAAGTAGCCTAAAATTTA  1031

seq1  AGTCACAAATGTGAGTAGCATACCAAAGACACAGCTCTTGGTCTAGGGGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAAATGTGAGTAGCATACCAAAGACACAGCTCTTGGTCTAGGGGT  1081

seq1  TTTCTGTAATAGGTGTGGGCACCACAATCACCAGGAATTC  1136
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTAATAGGTGTGGGCACCACAATCACCAGGAATTC  1121


seq1: chr6_32894096_32895144
seq2: B6Ng01-215M20.g_67_1129

seq1  GAATTCCACACAACTGACTTAATTCCCCCCTCTCTCCTCTGTTTGTCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAACTGACTTAATTCCCCCCTCTCTCCTCTGTTTGTCTGT  50

seq1  CTCTCTGTCTCTTTCTCTCTCTGTGTCTCACTCTCTCTCTGTCTCACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTCTTTCTCTCTCTGTGTCTCACTCTCTCTCTGTCTCACACA  100

seq1  CAAACACAAACACACAAACACACAAACACGCCTATTACCCAAAATGAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACAAACACACAAACACACAAACACGCCTATTACCCAAAATGAACT  150

seq1  ACTGCTATCTACTAAAATTAAAATAATTTTGCTATGATCAAATGACTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTATCTACTAAAATTAAAATAATTTTGCTATGATCAAATGACTCCA  200

seq1  ACTTCTTTAAACATGATAAACAGGAAATAGAACAATGGGAGAGACCAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTTAAACATGATAAACAGGAAATAGAACAATGGGAGAGACCAAAA  250

seq1  GGGAGAATTAAAGGAGAATTACAGGAAAATTCATGAGCAATCCAGAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAATTAAAGGAGAATTACAGGAAAATTCATGAGCAATCCAGAAGGC  300

seq1  CAGCAGTGCTCTGAGGAGCAAGGAGTCACTGTACAGCACTGACTTAAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGTGCTCTGAGGAGCAAGGAGTCACTGTACAGCACTGACTTAAGGC  350

seq1  ACAGAGGTTTTAGAAAGGAGAGAGGGAGGGGTGAGAGGAGAAGAGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGTTTTAGAAAGGAGAGAGGGAGGGGTGAGAGGAGAAGAGAGAGA  400

seq1  GGACAGACAGCAAGCAAAACAAAATTTATCTTAGAAAAAAAAAAAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACAGCAAGCAAAACAAAATTTATCTTAGAAAAAAAAAAAAAAAA  450

seq1  GAAAAGTCACTCAGGTAAATATTCAAACTCAGCTCCAAGACCGGCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCACTCAGGTAAATATTCAAACTCAGCTCCAAGACCGGCTCCTA  500

seq1  GAGCCAGACACACAAAGTGCACATAATACTTTCTGAAGCAACACTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGACACACAAAGTGCACATAATACTTTCTGAAGCAACACTGGAGA  550

seq1  TGGGAGAAAACCCCACAACACTGGCATAGTGTGCTTTTTCCCATGTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAAACCCCACAACACTGGCATAGTGTGCTTTTTCCCATGTCCCA  600

seq1  TGAGATTATTCAAATAATCTACATAAATACCAGTTAGCAATTATGCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTATTCAAATAATCTACATAAATACCAGTTAGCAATTATGCTGTG  650

seq1  AACACTAAAAATTCTATAAGGGATAATCCTCAGAGTGCAGATTTACATAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAAAAATTCTATAAGGGATAATCCTCAGAGTGCAGATTTACATAG  700

seq1  GTCAGATAAACA-TTTTTACTAAAAATGAT-AAACAGAACCATCTGTATG  748
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  GTCAGATAAACATTTTTTACTAAAAATGATAAAACAGAACCATCTGTATG  750

seq1  CACACACTTTCAAACATCCA-TTTAATAATTATAAGCTGGATAAAGACCA  797
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CACACACTTTCAAACATCCATTTTAATAATTATAAGCTGGATAAAGACCA  800

seq1  GACACATTATTATTACATCAAATACGACAAAAATATCTGATGATTACTAT  847
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  GACACATTATTATTACATCAATTACGAC-AAAATATCTGATGATTACTAT  849

seq1  ACTTA-GCCTTGATAAGATACAC-TCAGCTAACCATT--AGGGAATGATT  893
      ||||| ||||||   |||||||| |||||||||| ||   ||||||||||
seq2  ACTTAGGCCTTGGATAGATACACTTCAGCTAACCCTTTAGGGGAATGATT  899

seq1  -CAATATATCAGAAATCTTTAGC-TAGCCATTATAA-TTTTCAAAGGCAA  940
       || ||||||||||||||||||| ||||   ||||| |||||||||| ||
seq2  CCATTATATCAGAAATCTTTAGCTTAGCTCATATAATTTTTCAAAGGTAA  949

seq1  TAGAGAAATTTATGATTATTTCAA-CATCTTTGTAACACACC-TGAAT-T  987
      |||||||||||||||||||| ||| ||||||||||||||||| ||||| |
seq2  TAGAGAAATTTATGATTATTCCAATCATCTTTGTAACACACCTTGAATCT  999

seq1  GAGGAATACTATGTACCAACATG-CTGGCACGTAAGAGGCTCTCAACAAA  1036
      ||||||| ||||| ||||||||| |||||||   ||| |||||  || ||
seq2  GAGGAATGCTATGAACCAACATGCCTGGCACCGTAGAAGCTCTTGACCAA  1049

seq1  CA-CTAATTAAATA  1049
       | |||||||||||
seq2  GACCTAATTAAATA  1063


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