BAC Information

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BAC

Clone NameB6Ng01-216K06
Chromosome6 (Build37)
Map Location 72,960,309 - 72,961,430
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3, Kcmf1, Tmsb10
Downstream geneDnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216K06.bB6Ng01-216K06.g
ACCGA033280GA033281
length1,2281,116
definitionB6Ng01-216K06.b B6Ng01-216K06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctggatcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagtagagaccacgccaagattattttattata
attgtgactattgagaaggggtggttgtttcccttaatttctttctcagc
tgttaattcttttgtaatagagagaaaggccattgactgtttgagtttat
tttatatttccagctactcaccgagctgtttatcagggttaggaggtctc
tgggtagatttagggtcacatcataataacatctaatcatctcggctaaa
ggtgagatatttgacttccctgttcgattgatccctgaattcccatttgt
gtggtcaaaaatagtgagctgctgctgc
gaattctcaccctcagcctcgcgggaggaaacttcatccttatgagtttc
atcctagacaaaggtgggcagaggtccttctaatggctcatgctttcatc
gagtaaaggcatttcctgccaacctggatcttcagagttcaatcctgaga
cccagaagccctctctccctacaaatacaggcaaataaaaacttgtaaaa
aggatgtctggagactagagtcacctttagaggaaagctagaagcaagtt
tgagtttcctattagctgtgaaaatatctgttccctctgggagaggccat
tcaggtgtgagtacaggccagggtgagggaggggactggtggccagttcc
tgagcacgtcacctggtgataggttggccaccaaccaccggagaacaact
ttctgaataaaaccttcaaaaagatacagggtgggaggctggagagaagg
ctcagtagttaagagcacgtgttgctcttggagaagaccagagttcagtt
cctagcttctatatgggtgtcttagttagggttttactgccgtgaagaga
caccatgaccaaggtaactcttataaggacaacatttaattggggctgcc
ttacatacaggttctgaggttcagtccattatcatcaaggtgggaacatg
gcagtgtccagacaggcatgctagcagaatactgacttccaggaagctag
gttgagtgagggtcttaagcccatgcccacagtgacacacctactccagc
aaggccacacctcctaatagtgccactccctgagccaagcatatacaaga
catcacaatgggatagctcacaaccatctataagtacaactcccagggat
gttgtaccctcttatgacctcctacacacacacacacacacacacacaca
cacacacacacactaaaatgaatctttaaaatacaggacaagcagggttt
gcattcactttgattttttttttaagtaccccccagagctccctggaata
accaccaccaagagtaccacattgttgggacctccatagcctctagtgca
tagtaagcaaagatgccttagttggtcatcatggaggaaggcccttgttc
ctgtagccttatgccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72960309_72961430
seq2: B6Ng01-216K06.g_65_1180

seq1  GAATTCTCACCCTCAGCCTCGCGGGAGGAAACTTCATCCTTATGAGTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCTCAGCCTCGCGGGAGGAAACTTCATCCTTATGAGTTTC  50

seq1  ATCCTAGACAAAGGTGGGCAGAGGTCCTTCTAATGGCTCATGCTTTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTAGACAAAGGTGGGCAGAGGTCCTTCTAATGGCTCATGCTTTCATC  100

seq1  GAGTAAAGGCATTTCCTGCCAACCTGGATCTTCAGAGTTCAATCCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAAGGCATTTCCTGCCAACCTGGATCTTCAGAGTTCAATCCTGAGA  150

seq1  CCCAGAAGCCCTCTCTCCCTACAAATACAGGCAAATAAAAACTTGTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAAGCCCTCTCTCCCTACAAATACAGGCAAATAAAAACTTGTAAAA  200

seq1  AGGATGTCTGGAGACTAGAGTCACCTTTAGAGGAAAGCTAGAAGCAAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGTCTGGAGACTAGAGTCACCTTTAGAGGAAAGCTAGAAGCAAGTT  250

seq1  TGAGTTTCCTATTAGCTGTGAAAATATCTGTTCCCTCTGGGAGAGGCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTTCCTATTAGCTGTGAAAATATCTGTTCCCTCTGGGAGAGGCCAT  300

seq1  TCAGGTGTGAGTACAGGCCAGGGTGAGGGAGGGGACTGGTGGCCAGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTGAGTACAGGCCAGGGTGAGGGAGGGGACTGGTGGCCAGTTCC  350

seq1  TGAGCACGTCACCTGGTGATAGGTTGGCCACCAACCACCGGAGAACAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACGTCACCTGGTGATAGGTTGGCCACCAACCACCGGAGAACAACT  400

seq1  TTCTGAATAAAACCTTCAAAAAGATACAGGGTGGGAGGCTGGAGAGAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAATAAAACCTTCAAAAAGATACAGGGTGGGAGGCTGGAGAGAAGG  450

seq1  CTCAGTAGTTAAGAGCACGTGTTGCTCTTGGAGAAGACCAGAGTTCAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAGTTAAGAGCACGTGTTGCTCTTGGAGAAGACCAGAGTTCAGTT  500

seq1  CCTAGCTTCTATATGGGTGTCTTAGTTAGGGTTTTACTGCCGTGAAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTTCTATATGGGTGTCTTAGTTAGGGTTTTACTGCCGTGAAGAGA  550

seq1  CACCATGACCAAGGTAACTCTTATAAGGACAACATTTAATTGGGGCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGACCAAGGTAACTCTTATAAGGACAACATTTAATTGGGGCTGCC  600

seq1  TTACATACAGGTTCTGAGGTTCAGTCCATTATCATCAAGGTGGGAACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATACAGGTTCTGAGGTTCAGTCCATTATCATCAAGGTGGGAACATG  650

seq1  GCAGTGTCCAGACAGGCATGCTAGCAGAATACTGACTTCCAGGAAGCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCCAGACAGGCATGCTAGCAGAATACTGACTTCCAGGAAGCTAG  700

seq1  GTTGAGTGAGGGTCTTAAGCCCATGCCCACAGTGACACACCTACTCCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGTGAGGGTCTTAAGCCCATGCCCACAGTGACACACCTACTCCAGC  750

seq1  AAGGCCACACCTCCTAATAGTGCCACTCCCTGAGCCAAGCATATACAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCACACCTCCTAATAGTGCCACTCCCTGAGCCAAGCATATACAAGA  800

seq1  CATCACAATGGGATAGCTCACAACCATCTATAAGTACAACT-CCAGGGAT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CATCACAATGGGATAGCTCACAACCATCTATAAGTACAACTCCCAGGGAT  850

seq1  GTTGTACCCTCTTATGACCTCCTACACACACACACACACACACACACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACCCTCTTATGACCTCCTACACACACACACACACACACACACACA  900

seq1  CACACACACACACTAAAATGAATCTTTAAAATACAGGACAAGCAGGGTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTAAAATGAATCTTTAAAATACAGGACAAGCAGGGTTT  950

seq1  GCATTCACTTTGATTTTTTTTTTTAAGTA-CCCCCAGAGCTCCCTGGGAA  998
      ||||||||||||| ||||||||||||||| ||||||||||||||| ||||
seq2  GCATTCACTTTGA-TTTTTTTTTTAAGTACCCCCCAGAGCTCCCT-GGAA  998

seq1  TAAACCACCAACCAAAGAGTA-CACA-TGGTGGGAC--TCATAG-CTCTA  1043
      | ||||||||  | ||||||| |||| || ||||||   ||||| |||||
seq2  T-AACCACCA--CCAAGAGTACCACATTGTTGGGACCTCCATAGCCTCTA  1045

seq1  GTTGCATATGTAGCAGAGGATGGCCTAGTTGGTCATCAATGGGAGGAGAG  1093
      | ||||||   |||| | |||| | |||||||||||||   |||||| ||
seq2  G-TGCATAGTAAGCA-AAGATGCCTTAGTTGGTCATCA--TGGAGGA-AG  1090

seq1  GCCCTTGGTCCTGTGAAGGCTTTATGCCC  1122
      ||||||| ||||||    || ||||||||
seq2  GCCCTTGTTCCTGT---AGCCTTATGCCC  1116