BAC Information

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BAC

Clone NameB6Ng01-216N16
Chromosome6 (Build37)6 (Build37)
Map Location 124,165,855 - 124,166,3814,056,157 - 4,057,191
singlet/doubletsingletsinglet
Overlap geneVmn2r27
Upstream genePpia-ps6_1344.1, Clec4n, Clec4d, Clec4e, EG232358, EG667180, LOC626436, EG546912, LOC100043511, Vmn2r-ps32, EG546913, LOC100043516, EG435916, EG243628, EG545874, LOC384484, LOC623282, V2r1b, EG384486, Vmn2r-ps34
Downstream geneLOC623374, EG622297, Cd163, LOC100043530, 1700013D24Rik, 1700027F06Rik, 1700060L04Rik, Pex5, Clstn3, C1rl, C1r, C1s, LOC667277, EG317677, Mboat5, Emg1, Phb2, Ptpn6, Grcc10, Atn1, Eno2, Lrrc23, Spsb2, Tpi1, Usp5, Cdca3, Gnb3, Leprel2, Gpr162, Cd4, Lag3, Ptms, Mlf2, EG667343, Cops7a, C530028O21Rik, Zfp384, Ing4, Acrbp, Gpr92, Chd4, Nol1, A930037G23Rik, Gapdh, Ncapd2, Mrpl51, Vamp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216N16.bB6Ng01-216N16.g
ACCGA033435GA033436
length9361,032
definitionB6Ng01-216N16.b B6Ng01-216N16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(124,165,855 - 124,166,381)(4,056,157 - 4,057,191)
sequence
gaattcatttctgggtcttcaattctattccattgatctacttgtctgtc
actgtaccagtaccatgcagttttgttttttttttatcacaattgcttta
tttagtacagcttaatatgaggcatggtgattccaccagaggttctttta
ttgttgagagtagtttttgctatcctcggttttttattattccagatgaa
tttgcaaattgccctttctaactcagtgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgctttcggcaggatagccattttt
actatattattccatgagcatggaagatctttccatcttctgagatcttc
aatttctttcttcagagactttcaatttctttcttcagagacttgaagtt
cttatcatacagacctttcacttccttagtcacacataagtattttatat
tatttgtgactattgtgaagggtgttgtttccctggtttctttctcagtc
tgtttatcctttgtgtagagaaaggccactgatttgtttgagttaatttt
atatccagctactgcactgaagctgtttattaggtttaggagttctctgg
tggaatttttggggtcacttatttatactatcatatcatctgcaaatact
aatattttgacttcttcccttccggtttgtatccccttgatctccctttg
ttgtcgaattgctctggctagaacttcaagtactatattgaataggtagg
gagaaagtgggcagccttgtctagtccctgattttagtgggattgcttcg
agtttctctccttttagtttgatgttgactactggtttgctgtagattgc
ttttaatatgtttaggtatgggccttgaattcctgatcttttcaggactt
ttatgatgatgggtgttggattttgtcaaatgcttt
gaattctttgttatcttatccaacatgaaatcctgacttactccatataa
gtactggaaattttaaatacaatttataatttctgggcatttatctaagc
ataaacatattttctgtaaaagtagacaaaattctacagaataatggaga
gaaatgaacttctttggttccttaatttgacttgaacatattcatggaaa
gtgttgcttatcctgtaattatttgaaatgtttcataatcagatcacaaa
agaactttaaaaaattgaaataaatgtattcttgagctttagttttcagt
catttcataattttcgtgcttgtagttttttaattctactcattttttaa
cagtcctggttcagagatgtggtgtggattagagtcagagaagttccatt
atacctgagcatcttgcaggcatttttcttttaatggaaaatttgaatat
gtgtttgactttgtactgatttgtttccattttaacctttaaaatatttt
attatgatgatgattttcaaaagttgtatagatgcatgtgtctgcatgtg
ggtttctggacatgagtgcaggtggtctgagcaacttgaggcaccagctc
tctggagctgcagctactgaagactgtgagctgcctggtgtggttgctgg
gacagaacttgcaacagtggaagagcaagtgttcttaaccttcaacatct
ctctatttcaaccttcactgacaattctgcttagttatctagatctttaa
tgtttcagatcatgtatagttcaaagtagaaccacctttcagcttttaaa
gtaactaaattaaccaaaaaaaaaaaaaagtgcaatgaactatatgaaca
agctgaatcttgctctattttatcaaaaatgaaaattattcaatgttata
gtggcataacaatactctaccatacaaccaagttaacaacagattttctg
gtaaaccaaacctaaccaaccacccaccaaaccaacaaacctaaagatcc
cctggagtgaaaaacaatagaaaaacaagcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_124165855_124166381
seq2: B6Ng01-216N16.b_463_982 (reverse)

seq1  AAAGCATTTGACAAGATCCAACACCCATTCATGATAAAAGTTCTGGAAAG  50
      |||||||||||||| |||||||||||| |||| |||||||| ||| ||||
seq2  AAAGCATTTGACAAAATCCAACACCCA-TCATCATAAAAGTCCTGAAAAG  49

seq1  ATCAGGAATTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCA  100
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  ATCAGGAATTCAAGGCCCATACCTAAACATATTAAAAGCAATCTACAGCA  99

seq1  AACCAGTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCA  150
      ||||||||| |||||||||| |||| |||||||| || ||||||||||||
seq2  AACCAGTAGTCAACATCAAACTAAAAGGAGAGAAACTCGAAGCAATCCCA  149

seq1  CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAA  200
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTATTCAA  199

seq1  CATAGTACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCA  250
       ||||||||||||||  |||||||||||||||||||||||| ||||||||
seq2  TATAGTACTTGAAGTTCTAGCCAGAGCAATTCGACAACAAAGGGAGATCA  249

seq1  AGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGAT  300
      ||||||||||||  |||| ||| ||||||||||||| | | |||||||||
seq2  AGGGGATACAAACCGGAAGGGAAGAAGTCAAAATATTAGTATTTGCAGAT  299

seq1  GATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCT  350
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  GATATGATAGTATAAATAAGTGACCCCAAAAATTCCACCAGAGAACTCCT  349

seq1  AAACCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAAATTAACTCAA  400
      |||||| |||||||||||| ||| ||||||||||||||||||||||||||
seq2  AAACCTAATAAACAGCTTCAGTGCAGTAGCTGGATATAAAATTAACTCAA  399

seq1  ACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAA  450
      |||| ||| |||||||||||||||||||| |||||||| |||||||||||
seq2  ACAAATCAGTGGCCTTTCTCTACACAAAGGATAAACAGACTGAGAAAGAA  449

seq1  ATTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCT  500
      |  |||||||||||||||||| |||||||||||||||||||||||||  |
seq2  ACCAGGGAAACAACACCCTTCACAATAGTCACAAATAATATAAAATACTT  499

seq1  CGGCATGACTCTAACTAAGGAAGTGAA  527
          |||  | | ||||||||||||||
seq2  ----ATG--TGTGACTAAGGAAGTGAA  520

seq1: chr6_4056157_4057191
seq2: B6Ng01-216N16.g_71_1102 (reverse)

seq1  TGGCTTTGTTTTTCTCCTTTGTTTTTCACT-CAGGGGATCTTTTATGTTT  49
      |||| ||||||||||   |||||||||||| ||||||||| |||| ||||
seq2  TGGC-TTGTTTTTCT--ATTGTTTTTCACTCCAGGGGATC-TTTAGGTTT  46

seq1  GTTTGTTTGGTTGGTTGGTTGTTTGGTTTTGTTTTACCAGAAAATCTGTT  99
      ||| |||||| ||| |||||| || | |||| ||||||||||||||||||
seq2  GTTGGTTTGG-TGGGTGGTTGGTTAGGTTTGGTTTACCAGAAAATCTGTT  95

seq1  GTTAACTTGGTTGTATGGTAGAGTATTTGTTATGCCACTATAAACATTGA  149
      ||||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  GTTAACTTGGTTGTATGGTAGAGTA-TTGTTATGCCACTAT-AACATTGA  143

seq1  AATATTTTCATTTTTGATAAAATAGAGC-AGATTCAGCTTGTTCATATAG  198
      |  ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATAATTTTCATTTTTGATAAAATAGAGCAAGATTCAGCTTGTTCATATAG  193

seq1  TTCATTGCAC-TTTTTTTTTTTTTGGTTAATTTAGTTACTTT-AAAGCTG  246
      |||||||||| ||||||||||||||||||||||||||||||| |||||||
seq2  TTCATTGCACTTTTTTTTTTTTTTGGTTAATTTAGTTACTTTAAAAGCTG  243

seq1  AAAGGTGGTTCTACTTTGAACTATACATGATCTGAAACATTAAAGATCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGTTCTACTTTGAACTATACATGATCTGAAACATTAAAGATCTA  293

seq1  GATAACTAAGCAGAATTGTCAGTGAAGGTTGAAATAGAGAGATGTTGAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTAAGCAGAATTGTCAGTGAAGGTTGAAATAGAGAGATGTTGAAG  343

seq1  GTTAAGAACACTTGCTCTTCCACTGTTGCAAGTTCTGTCCCAGCAACCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAACACTTGCTCTTCCACTGTTGCAAGTTCTGTCCCAGCAACCAC  393

seq1  ACCAGGCAGCTCACAGTCTTCAGTAGCTGCAGCTCCAGAGAGCTGGTGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCAGCTCACAGTCTTCAGTAGCTGCAGCTCCAGAGAGCTGGTGCC  443

seq1  TCAAGTTGCTCAGACCACCTGCACTCATGTCCAGAAACCCACATGCAGAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTGCTCAGACCACCTGCACTCATGTCCAGAAACCCACATGCAGAC  493

seq1  ACATGCATCTATACAACTTTTGAAAATCATCATCATAATAAAATATTTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCATCTATACAACTTTTGAAAATCATCATCATAATAAAATATTTTA  543

seq1  AAGGTTAAAATGGAAACAAATCAGTACAAAGTCAAACACATATTCAAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAAAATGGAAACAAATCAGTACAAAGTCAAACACATATTCAAATT  593

seq1  TTCCATTAAAAGAAAAATGCCTGCAAGATGCTCAGGTATAATGGAACTTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTAAAAGAAAAATGCCTGCAAGATGCTCAGGTATAATGGAACTTC  643

seq1  TCTGACTCTAATCCACACCACATCTCTGAACCAGGACTGTTAAAAAATGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTCTAATCCACACCACATCTCTGAACCAGGACTGTTAAAAAATGA  693

seq1  GTAGAATTAAAAAACTACAAGCACGAAAATTATGAAATGACTGAAAACTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTAAAAAACTACAAGCACGAAAATTATGAAATGACTGAAAACTA  743

seq1  AAGCTCAAGAATACATTTATTTCAATTTTTTAAAGTTCTTTTGTGATCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCAAGAATACATTTATTTCAATTTTTTAAAGTTCTTTTGTGATCTG  793

seq1  ATTATGAAACATTTCAAATAATTACAGGATAAGCAACACTTTCCATGAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAACATTTCAAATAATTACAGGATAAGCAACACTTTCCATGAAT  843

seq1  ATGTTCAAGTCAAATTAAGGAACCAAAGAAGTTCATTTCTCTCCATTATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCAAGTCAAATTAAGGAACCAAAGAAGTTCATTTCTCTCCATTATT  893

seq1  CTGTAGAATTTTGTCTACTTTTACAGAAAATATGTTTATGCTTAGATAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAATTTTGTCTACTTTTACAGAAAATATGTTTATGCTTAGATAAA  943

seq1  TGCCCAGAAATTATAAATTGTATTTAAAATTTCCAGTACTTATATGGAGT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAAATTATAAATTGTATTTAAAATTTCCAGTACTTATATGGAGT  993

seq1  AAGTCAGGATTTCATGTTGGATAAGATAACAAAGAATTC  1035
      |||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGATTTCATGTTGGATAAGATAACAAAGAATTC  1032