BAC Information

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BAC

Clone NameB6Ng01-217I06
Chromosome6 (Build37)
Map Location 47,759,361 - 47,760,196
singlet/doubletsinglet
Overlap genePdia4
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379
Downstream geneLOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139, LOC623601, Zfp777, Zfp746, LOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217I06.bB6Ng01-217I06.g
ACCGA033903GA033904
length842695
definitionB6Ng01-217I06.b B6Ng01-217I06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagattgagtgtaagggactaagcttgtatcaccagccctcctgg
aacagcagccgcttggctttaatcaatatcaacaaactgtgtattatgac
ttaattctggttctttcaaaaaagtatgtcagtagactaggcaccatttt
ttgagtgtcacagagcagaggcttgttgtattttgtgtggtatgtatgtc
ctcccgtatcctcagttcctgaacattctggaaagatgtgaacaaaacct
tgctgaggaagcttgtcctctgttccctagggagttgtccaaataacatg
tatcatggaaccatgcaataaataggtaccctcgtactgtcaaatgtcaa
gctcaatcagagacccacatcttctctactctgttcctcctgaatgcctg
agaacctgtccccttacttcctctctgtccttaacacctgttttgatggt
gcccagaaggaggtagcggtgggcaagagaagcacacgccagcttggttt
ttactctgaaagtgggcatattagagctatttctcttactctaacatcag
aagaatgtaggcctcagtcgaggaaaggatgagtgaggcaagaaaaggct
gtggagtgggggaagtgagtgagatatgagaagtagagatgaggcagagc
taggatttttgaatgattttacagattggtaaagtccgtttaataatgat
caaagctaccccgattaaccccagaaacttcagcattgtggaagaaacag
tgtgagggacatgtgggtgaaaactcggggggtctctatgtatccacagc
tattagagccagtattgagttacttcatgcattccacaagtc
gaattcatgatcagttgtaattcctgtttggtctaagtcctttcgggaaa
tgagttggatttaaatcatggggggcgggggtttggggagactgagggta
gtcgacagaaagtctacttcgggatcaagactagaatgttccccttcctc
atagaacagcaagagagctgcatcgttgagagaaggagcacatgagcttc
cgtgccttccaagcatgtactcgtaggagcaagaaaattaggcctgggac
aagttcatgctcacagagagcatccgttcaacgttgggcctgacttcctg
gatcttgtgatctaagcctgtggccataagtgctcggtgtgcacctcgaa
gagacacacggctaggaataaacagcaaatcgctctattacgagtgtcag
aatagagggtaggcgattgcccagattacctgaacaacaagacttcaaaa
cgaaacaaaacaaaacgaaacgaaacgaaacgaaacgaaaggtgcacaac
agatgatgatcggtctcccgctaaatacaaagtgtcaccagtcaagcaca
gaaaaaacacttgctaacctaggctccattgccttaaactttgttcatca
gttaagacaagagttaagtccatctagtggagagaaagaacgatgggaaa
agtttcttaggcgtgaatgtcaaaacaaaaattattgtcatcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_47759361_47760196
seq2: B6Ng01-217I06.b_45_886 (reverse)

seq1  GACTTGTGGAATGTATGAAGTAACTCAATACTGGCTCT-ATAACTGTGGG  49
      ||||||||||||| |||||||||||||||||||||||| ||| |||||| 
seq2  GACTTGTGGAATGCATGAAGTAACTCAATACTGGCTCTAATAGCTGTGGA  50

seq1  TACATAGAGACCCCCCGAG-TTTCACCCACATGTCCCTCACACTG-TTCT  97
      ||||||||||||||||||| ||||||||||||||||||||||||| ||||
seq2  TACATAGAGACCCCCCGAGTTTTCACCCACATGTCCCTCACACTGTTTCT  100

seq1  TCCACAATGCTGAAG-TTCTGGGGTT-ATCGGGTTAGCTTTGATCATTAT  145
      ||||||||||||||| |||||||||| |||||| ||||||||||||||||
seq2  TCCACAATGCTGAAGTTTCTGGGGTTAATCGGGGTAGCTTTGATCATTAT  150

seq1  T-AACGGACTTTACCAATCTGTAAAATCATTCAAAAATCCTAGCTCTGCC  194
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACGGACTTTACCAATCTGTAAAATCATTCAAAAATCCTAGCTCTGCC  200

seq1  TCATCTCTACTTCTCATATCTCACTCACTTCCCCCACTCCACAGCCTTTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTACTTCTCATATCTCACTCACTTCCCCCACTCCACAGCCTTTT  250

seq1  CTTGCCTCACTCATCCTTTCCTCGACTGAGGCCTACATTCTTCTGATGTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCACTCATCCTTTCCTCGACTGAGGCCTACATTCTTCTGATGTT  300

seq1  AGAGTAAGAGAAATAGCTCTAATATGCCCACTTTCAGAGTAAAAACCAAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAGAGAAATAGCTCTAATATGCCCACTTTCAGAGTAAAAACCAAG  350

seq1  CTGGCGTGTGCTTCTCTTGCCCACCGCTACCTCCTTCTGGGCACCATCAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCGTGTGCTTCTCTTGCCCACCGCTACCTCCTTCTGGGCACCATCAA  400

seq1  AACAGGTGTTAAGGACAGAGAGGAAGTAAGGGGACAGGTTCTCAGGCATT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGTTAAGGACAGAGAGGAAGTAAGGGGACAGGTTCTCAGGCATT  450

seq1  CAGGAGGAACAGAGTAGAGAAGATGTGGGTCTCTGATTGAGCTTGACATT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGAACAGAGTAGAGAAGATGTGGGTCTCTGATTGAGCTTGACATT  500

seq1  TGACAGTACGAGGGTACCTATTTATTGCATGGTTCCATGATACATGTTAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTACGAGGGTACCTATTTATTGCATGGTTCCATGATACATGTTAT  550

seq1  TTGGACAACTCCCTAGGGAACAGAGGACAAGCTTCCTCAGCAAGGTTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACAACTCCCTAGGGAACAGAGGACAAGCTTCCTCAGCAAGGTTTTG  600

seq1  TTCACATCTTTCCAGAATGTTCAGGAACTGAGGATACGGGAGGACATACA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTTTCCAGAATGTTCAGGAACTGAGGATACGGGAGGACATACA  650

seq1  TACCACACAAAATACAACAAGCCTCTGCTCTGTGACACTCAAAAAATGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACACAAAATACAACAAGCCTCTGCTCTGTGACACTCAAAAAATGGT  700

seq1  GCCTAGTCTACTGACATACTTTTTTGAAAGAACCAGAATTAAGTCATAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGTCTACTGACATACTTTTTTGAAAGAACCAGAATTAAGTCATAAT  750

seq1  ACACAGTTTGTTGATATTGATTAAAGCCAAGCGGCTGCTGTTCCAGGAGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTTGTTGATATTGATTAAAGCCAAGCGGCTGCTGTTCCAGGAGG  800

seq1  GCTGGTGATACAAGCTTAGTCCCTTACACTCAATCTGAATTC  836
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGATACAAGCTTAGTCCCTTACACTCAATCTGAATTC  842