This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Result
BAC
Clone Name
B6Ng01-218N07
Chromosome
6 (Build37)
Map Location
105,865,427 - 106,006,237
singlet/doublet
doublet
Overlap gene
Cntn4
Upstream gene
LOC384470
,
LOC100043716
,
LOC100043350
Downstream gene
Il5ra
,
Trnt1
,
Crbn
Link
Open Mouse BAC browser
Click to get alignment info.
name
LOC384470
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:384470
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins
pseudo
: _no_value
name
LOC100043716
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043716
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins
pseudo
: _no_value
name
LOC100043350
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100043350
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
name
Cntn4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:269784
MGI:1095737
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Il5ra
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16192
MGI:96558
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Trnt1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:70047
MGI:1917297
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Crbn
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:58799
MGI:1913277
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
LOC100043350
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149255256
GeneID:100043350
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins
product
: similar to reproductive homeobox on X chromosome 8
transcript_id
: XM_001480003.1
name
Cntn4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142382585
GeneID:269784
MGI:1095737
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: contactin 4
transcript_id
: NM_173004.2
name
Il5ra
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130832
GeneID:16192
MGI:96558
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: interleukin 5 receptor, alpha
transcript_id
: NM_008370.2
name
Trnt1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130356
GeneID:70047
MGI:1917297
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tRNA nucleotidyl transferase, CCA-adding, 1
transcript_id
: NM_027296.2
name
Crbn
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:90403611
GeneID:58799
MGI:1913277
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cereblon
transcript_id
: NM_021449.2
name
Crbn
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:90403605
GeneID:58799
MGI:1913277
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: cereblon
transcript_id
: NM_175357.2
name
LOC100043350
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149255257
GeneID:100043350
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001480053.1
name
Cntn4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:27370508
CCDS:CCDS20395.1
GeneID:269784
MGI:1095737
definition
GO_component
: GO:0030424 - axon [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence ISS] [Evidence IEA]
GO_function
: GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007411 - axon guidance [Evidence ISS]; GO:0007413 - axonal fasciculation [Evidence ISS]; GO:0007420 - brain development [Evidence ISS]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0045665 - negative regulation of neuron differentiation [Evidence ISS]; GO:0007399 - nervous system development [Evidence ISS]; GO:0031175 - neurite development [Evidence ISS]; GO:0007158 - neuron adhesion [Evidence ISS]; GO:0048167 - regulation of synaptic plasticity [Evidence ISS]
codon_start
: 1
exception
: mismatches in translation
note
: axonal-associated cell adhesion molecule
product
: contactin 4
protein_id
: NP_766592.1
name
Il5ra
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6680431
CCDS:CCDS20396.1
GeneID:16192
MGI:96558
definition
GO_component
: GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004896 - hematopoietin/interferon-class (D200-domain) cytokine receptor activity [Evidence IEA]; GO:0004907 - interleukin receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]
GO_process
: GO:0007166 - cell surface receptor linked signal transduction [Evidence IEA]
codon_start
: 1
note
: IL-5 receptor alpha chain
product
: interleukin 5 receptor, alpha
protein_id
: NP_032396.1
name
Trnt1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:33859692
CCDS:CCDS20397.1
GeneID:70047
MGI:1917297
definition
GO_component
: GO:0005739 - mitochondrion [Evidence ISS]
GO_function
: GO:0005524 - ATP binding [Evidence ISS]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004810 - tRNA adenylyltransferase activity [Evidence ISS] [Evidence IEA]; GO:0000049 - tRNA binding [Evidence ISS]; GO:0009022 - tRNA nucleotidyltransferase activity [Evidence ISS]
GO_process
: GO:0006396 - RNA processing [Evidence IEA]; GO:0042780 - tRNA 3'-processing [Evidence ISS]; GO:0008033 - tRNA processing [Evidence ISS]
codon_start
: 1
note
: tRNA adenylyltransferase, mitochondrial
product
: tRNA nucleotidyl transferase, CCA-adding, 1
protein_id
: NP_081572.1
name
Crbn
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:90403612
GeneID:58799
MGI:1913277
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0006510 - ATP-dependent proteolysis [Evidence IEA]; GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1; novel lethal
product
: cereblon isoform 1
protein_id
: NP_067424.2
name
Crbn
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:28202023
GeneID:58799
MGI:1913277
definition
GO_component
: GO:0005575 - cellular_component [Evidence ND]
GO_function
: GO:0004176 - ATP-dependent peptidase activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0006510 - ATP-dependent proteolysis [Evidence IEA]; GO:0008150 - biological_process [Evidence ND]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2; novel lethal
product
: cereblon isoform 2
protein_id
: NP_780566.1
name
LOC384470
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384470
definition
number
: 3
pseudo
: _no_value
name
LOC384470
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384470
definition
number
: 2
pseudo
: _no_value
name
LOC384470
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384470
definition
number
: 1
pseudo
: _no_value
name
(CDS detail)
type
STS
link
xref
UniSTS:124362
definition
standard_name
: 40.MMHAP28FLF4.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:159551
definition
standard_name
: AU043415
name
(CDS detail)
type
STS
link
xref
UniSTS:123863
definition
standard_name
: 29.MMHAP47FLB5.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:125178
definition
standard_name
: MHAa43h8.seq
name
(CDS detail)
type
STS
link
xref
UniSTS:142591
definition
standard_name
: D6Mit376
name
(CDS detail)
type
STS
link
xref
UniSTS:130924
definition
standard_name
: D6Mit37
name
(CDS detail)
type
STS
link
xref
UniSTS:130694
definition
standard_name
: D6Mit149
name
(CDS detail)
type
STS
link
xref
UniSTS:130734
definition
standard_name
: D6Mit192
name
(CDS detail)
type
STS
link
xref
UniSTS:130833
definition
standard_name
: D6Mit286
name
(CDS detail)
type
STS
link
xref
UniSTS:130942
definition
standard_name
: D6Mit39
name
(CDS detail)
type
STS
link
xref
UniSTS:125903
definition
standard_name
: X99043
name
(CDS detail)
type
STS
link
xref
UniSTS:159553
definition
standard_name
: D90205
name
(CDS detail)
type
STS
link
xref
UniSTS:143573
definition
standard_name
: Il5ra
name
(CDS detail)
type
STS
link
xref
UniSTS:210835
definition
standard_name
: RH127525
name
(CDS detail)
type
STS
link
xref
UniSTS:179427
definition
standard_name
: AW108261
name
(CDS detail)
type
STS
link
xref
UniSTS:161528
definition
standard_name
: RH124706
name
(CDS detail)
type
STS
link
xref
UniSTS:162704
definition
standard_name
: RH125992
name
(CDS detail)
type
STS
link
xref
UniSTS:178496
definition
standard_name
: AI987788
name
LOC100043716
(CDS detail)
type
misc_RNA
link
vega
ensembl
NCBI
xref
GI:149255392
GeneID:100043716
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 5 Proteins
product
: similar to ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G
pseudo
: _no_value
transcript_id
: XR_034808.1
clone name
MSMg01-131K20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-404B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-085J14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-136L23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-125L21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-303I11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-303K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-051C21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506P12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143L10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346L13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-360D13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114J22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-231A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481G16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-463D13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-312A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-211K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-524I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495D19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-122I18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188G07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-394B22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-107L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-541C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-234I23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-478D19
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-274B10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-262M10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351G14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457L06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457L07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-161E02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-360M20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-143F11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362E21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-465P01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-457A20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-315A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-371I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-269D23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-126J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-063J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-346D05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-154H24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-401P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-502B11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-315D08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-380P24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-080E24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-075I10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-350H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-538C02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340B13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-361N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-322B08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-109G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384L23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-235F16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-137B12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426G05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-106B07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-459N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-123N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-388N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-216O20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-382N23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-426O09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385C11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-084I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-540M09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-512G02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-506E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513M23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-396I15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381O03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102A07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-412J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-142D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-066J23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411A19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-411C17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417K04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-136D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-233O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400J06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-301L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-144A18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323A06
singlet/doublet
doublet
plural/unique
unique
clone name
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