BAC Information

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BAC

Clone NameB6Ng01-219A09
Chromosome6 (Build37)
Map Location 110,341,318 - 110,496,008
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219A09.bB6Ng01-219A09.g
ACCGA034987GA034988
length1,2031,170
definitionB6Ng01-219A09.b B6Ng01-219A09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,494,809 - 110,496,008)(110,341,318 - 110,342,477)
sequence
gaattcagagtatcaaaggatactagttccatgagcactgatatcgtcat
gaagagtaaagctaattgctctgataattgtcagagaaagctgcaaagat
ttcaacttaataaattctgaacgttgaggtaaatggagaaaaaaatcaag
tttgcatttttttcaatatagaatgcataacattgccatgcatacatgtt
ttacgggaccatggtaacagagtggagttctgtcctctgctacagtctcc
atacatttcatacactggcagctctgaatacatcttctattaaaagcaca
agtgtgcccccttctgaataaaagaaatattgagacctatatctgtactt
caaataacaatgtctctcctcttgggatcaaactgaataaataaatgttg
gcaaatatcagttgttagtgaatcctttgggaaatactataagtgataga
cacacacacacacacacacacacacacacacacacacagagagagagaga
gagagagagagagagagagagagagaggctatgtggtattcaccacagaa
aacttctgaaatccagcattccagaagaaagtatgatctcatttttgaca
aagaatcacaggccaggagctacatcaagaaagagtcaagagagcctgga
gaacaatgtacaactattttaagtactgaaatagattaaaacaaaaaaag
gtaaagtgtcagcccacagtgatggttcagttatgttttgaaaaacagtg
gctgtatcagctaagtctgtgtttacttcaccatttgctttgctttttca
gttttgaagatgatgaaatagaggtcagaatgattaaataggttcaagac
catttattgcttatgcttatgcaaattattccacctgtagtgaaactccc
ggatccaaataagctattctggtagtttaatccacgccagatacattctg
tctttaaaacatttacttcaattcagagtgtgcatttgttctcttgtaca
ttaagaagaaaatcaacttagaacaaaaataacagatggatacaaaaata
cagaatgcatgttggatttgaatttctctgggccatgtacacagactgtt
ctccaaagtggcattggaatggaaataatgggtgatggataattaaattg
gacaaccggcaatggacaggtaattgacaaacgaatgggtttaattctta
gta

gaattcagtttctgcaaagaacatataatatattttctttgttcttattt
tcttcatgaataaataatatcaagtgtattatttaattataaaatgatat
tctgagtatttttgctggatttttaaatcgcaataccaaaatacatgaga
taactaagaaagagaaaagttaattttggtgcattgcttagatatgtgtt
ttgagctacttactgcttttatgcctttggcaggttgtaacatggtaatg
attgataattcagaaaagagaaagctacctcataactaggaagcaaagag
caagaagagatgacacttccaacttcaagaacatgatctagtgtgtaaag
atctcccactacttctcactttccaaatattcacccatctcccaacatta
gggatcaagtctccatcacaagtggatttttgtgagattgtcaagaacca
aaccacagcataaatatttaatatttagacttcaattccttatatctact
caactcaactcaactcaactcaactcaactgagcattattattgttgttg
ttgttgctgctgttgttgttgtcatttttgacagtcttcaggaaatctcc
ttctccttctatgatgctgagaggagaatatcattctcatacctatggtg
aactggcatagttattcagaatgatggccattgccagatttcagaatagt
aataaaaagcagttttacattgacattttatattattctatttaaagtcc
tagaaataaagattcaagatttttgtctcttcaagtaataaattgtttaa
acaagaaaatagctcttttgattagcctccatttgcttgtcactgtttgg
ctttgtagatgcagtctccaagctacaatgtttgaagctctgttttatat
aagttccatgttataagatcatcttgaaaattctccatacctttctttct
cagaaccttattcaaattgtgcccctgtgagctttctagtgtctacagga
gatgcattatgtgattgagttctgtaagaaaatttttttcttcatcattc
aagtgttgaaattctattatttagaaggctctggtaacaaaataattatg
ttattaatattaatgagcacaaatttaatatagttgtacttgtccattgg
aaagaaaaaagtcattgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_110494809_110496008
seq2: B6Ng01-219A09.b_44_1246 (reverse)

seq1  TACTATGAATTAAACCCATTCGTTTGTCATTTACCTTGTCATTG-CTGTT  49
      ||||| ||||||||||||||||||||||| ||||||   ||||| | |||
seq2  TACTAAGAATTAAACCCATTCGTTTGTCAATTACCTGTCCATTGCCGGTT  50

seq1  GT-CATTTTTATTATTCTATCA-CCATTATTT-CATTTCCATGCAACTTT  96
      || || ||| |||| || |||| ||||||||| |||| | |||| |||||
seq2  GTCCAATTTAATTA-TCCATCACCCATTATTTCCATTCCAATGCCACTTT  99

seq1  -GAG-ACAGTCTGTTGGTACATGGCC--AAGAAAATCAAATCCAACATGC  142
       ||| |||||||||  ||||||||||   ||||| |||||||||||||||
seq2  GGAGAACAGTCTGT--GTACATGGCCCAGAGAAATTCAAATCCAACATGC  147

seq1  ATTCTGTATTTTTGTATCCAATCTG-TATTTTTGTTCTAAGTTGATTTTT  191
      ||||||||||||||||||| ||||| ||||||||||||||||||| ||||
seq2  ATTCTGTATTTTTGTATCC-ATCTGTTATTTTTGTTCTAAGTTGA-TTTT  195

seq1  CTTCTTAATGTACAAGAGAACAAATGCACACTCTGAATTGAAGTAAATGT  241
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTCTTAATGTACAAGAGAACAAATGCACACTCTGAATTGAAGTAAATG-  244

seq1  TTTTAAAGACAGAATGTATCTGGCGTGGATTAAACTACCAGAATAGCTTA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACAGAATGTATCTGGCGTGGATTAAACTACCAGAATAGCTTA  294

seq1  TTTGGATCCGGGAGTTTCACTACAGGTGGAATAATTTGCATAAGCATAAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATCCGGGAGTTTCACTACAGGTGGAATAATTTGCATAAGCATAAG  344

seq1  CAATAAATGGTCTTGAACCTATTTAATCATTCTGACCTCTATTTCATCAT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATGGTCTTGAACCTATTTAATCATTCTGACCTCTATTTCATCAT  394

seq1  CTTCAAAACTGAAAAAGCAAAGCAAATGGTGAAGTAAACACAGACTTAGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAACTGAAAAAGCAAAGCAAATGGTGAAGTAAACACAGACTTAGC  444

seq1  TGATACAGCCACTGTTTTTCAAAACATAACTGAACCATCACTGTGGGCTG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAGCCACTGTTTTTCAAAACATAACTGAACCATCACTGTGGGCTG  494

seq1  ACACTTTACCTTTTTTTGTTTTAATCTATTTCAGTACTTAAAATAGTTGT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTACCTTTTTTTGTTTTAATCTATTTCAGTACTTAAAATAGTTGT  544

seq1  ACATTGTTCTCCAGGCTCTCTTGACTCTTTCTTGATGTAGCTCCTGGCCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTTCTCCAGGCTCTCTTGACTCTTTCTTGATGTAGCTCCTGGCCT  594

seq1  GTGATTCTTTGTCAAAAATGAGATCATACTTTCTTCTGGAATGCTGGATT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCTTTGTCAAAAATGAGATCATACTTTCTTCTGGAATGCTGGATT  644

seq1  TCAGAAGTTTTCTGTGGTGAATACCACATAGCCTCTCTCTCTCTCTCTCT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTTTTCTGTGGTGAATACCACATAGCCTCTCTCTCTCTCTCTCT  694

seq1  CTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  744

seq1  GTGTGTGTGTCTATCACTTATAGTATTTCCCAAAGGATTCACTAACAACT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTCTATCACTTATAGTATTTCCCAAAGGATTCACTAACAACT  794

seq1  GATATTTGCCAACATTTATTTATTCAGTTTGATCCCAAGAGGAGAGACAT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTGCCAACATTTATTTATTCAGTTTGATCCCAAGAGGAGAGACAT  844

seq1  TGTTATTTGAAGTACAGATATAGGTCTCAATATTTCTTTTATTCAGAAGG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTGAAGTACAGATATAGGTCTCAATATTTCTTTTATTCAGAAGG  894

seq1  GGGCACACTTGTGCTTTTAATAGAAGATGTATTCAGAGCTGCCAGTGTAT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACTTGTGCTTTTAATAGAAGATGTATTCAGAGCTGCCAGTGTAT  944

seq1  GAAATGTATGGAGACTGTAGCAGAGGACAGAACTCCACTCTGTTACCATG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTATGGAGACTGTAGCAGAGGACAGAACTCCACTCTGTTACCATG  994

seq1  GTCCCGTAAAACATGTATGCATGGCAATGTTATGCATTCTATATTGAAAA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGTAAAACATGTATGCATGGCAATGTTATGCATTCTATATTGAAAA  1044

seq1  AAATGCAAACTTGATTTTTTTCTCCATTTACCTCAACGTTCAGAATTTAT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAACTTGATTTTTTTCTCCATTTACCTCAACGTTCAGAATTTAT  1094

seq1  TAAGTTGAAATCTTTGCAGCTTTCTCTGACAATTATCAGAGCAATTAGCT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGAAATCTTTGCAGCTTTCTCTGACAATTATCAGAGCAATTAGCT  1144

seq1  TTACTCTTCATGACGATATCAGTGCTCATGGAACTAGTATCCTTTGATAC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTTCATGACGATATCAGTGCTCATGGAACTAGTATCCTTTGATAC  1194

seq1  TCTGAATTC  1200
      |||||||||
seq2  TCTGAATTC  1203


seq1: chr6_110341318_110342477
seq2: B6Ng01-219A09.g_66_1235

seq1  GAATTCAGTTTCTGCAAAGAACATATAATATATTTTCTTTGTTCTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTGCAAAGAACATATAATATATTTTCTTTGTTCTTATTT  50

seq1  TCTTCATGAATAAATAATATCAAGTGTATTATTTAATTATAAAATGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGAATAAATAATATCAAGTGTATTATTTAATTATAAAATGATAT  100

seq1  TCTGAGTATTTTTGCTGGATTTTTAAATCGCAATACCAAAATACATGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATTTTTGCTGGATTTTTAAATCGCAATACCAAAATACATGAGA  150

seq1  TAACTAAGAAAGAGAAAAGTTAATTTTGGTGCATTGCTTAGATATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGAAAGAGAAAAGTTAATTTTGGTGCATTGCTTAGATATGTGTT  200

seq1  TTGAGCTACTTACTGCTTTTATGCCTTTGGCAGGTTGTAACATGGTAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCTACTTACTGCTTTTATGCCTTTGGCAGGTTGTAACATGGTAATG  250

seq1  ATTGATAATTCAGAAAAGAGAAAGCTACCTCATAACTAGGAAGCAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAATTCAGAAAAGAGAAAGCTACCTCATAACTAGGAAGCAAAGAG  300

seq1  CAAGAAGAGATGACACTTCCAACTTCAAGAACATGATCTAGTGTGTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGAGATGACACTTCCAACTTCAAGAACATGATCTAGTGTGTAAAG  350

seq1  ATCTCCCACTACTTCTCACTTTCCAAATATTCACCCATCTCCCAACATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCACTACTTCTCACTTTCCAAATATTCACCCATCTCCCAACATTA  400

seq1  GGGATCAAGTCTCCATCACAAGTGGATTTTTGTGAGATTGTCAAGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAGTCTCCATCACAAGTGGATTTTTGTGAGATTGTCAAGAACCA  450

seq1  AACCACAGCATAAATATTTAATATTTAGACTTCAATTCCTTATATCTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGCATAAATATTTAATATTTAGACTTCAATTCCTTATATCTACT  500

seq1  CAACTCAACTCAACTCAACTCAACTCAACTGAGCATTATTATTGTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCAACTCAACTCAACTCAACTCAACTGAGCATTATTATTGTTGTTG  550

seq1  TTGTTGCTGCTGTTGTTGTTGTCATTTTTGACAGTCTTCAGGAAATCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCTGCTGTTGTTGTTGTCATTTTTGACAGTCTTCAGGAAATCTCC  600

seq1  TTCTCCTTCTATGATGCTGAGAGGAGAATATCATTCTCATACCTATGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCTATGATGCTGAGAGGAGAATATCATTCTCATACCTATGGTG  650

seq1  AACTGGCATAGTTATTCAGAATGATGGCCATTGCCAGATTTCAGAATAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCATAGTTATTCAGAATGATGGCCATTGCCAGATTTCAGAATAGT  700

seq1  AATAAAAAGCAGTTTTACATTGACATTTTATATTATTCTATTTAAAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAGCAGTTTTACATTGACATTTTATATTATTCTATTTAAAGTCC  750

seq1  TAGAAATAAAGATTCAAGATTTTTGTCTCTTCAAGTAATAAATTGTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAAGATTCAAGATTTTTGTCTCTTCAAGTAATAAATTGTTTAA  800

seq1  ACAAGAAAATAGCTCTTTTGATTAGCCTCCATTTGCTTGTCACTGTTTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAATAGCTCTTTTGATTAGCCTCCATTTGCTTGTCACTGTTTGG  850

seq1  CTTTGTAGATGCAGTCTCCAAGCTACAATGTTTGAAGCTCTGTTTTATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTAGATGCAGTCTCCAAGCTACAATGTTTGAAGCTCTGTTTTATAT  900

seq1  AAGTTCCATGTTATAAGATCATCTTG-AAATTCTCCATACCTTTCTTTCT  949
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGTTCCATGTTATAAGATCATCTTGAAAATTCTCCATACCTTTCTTTCT  950

seq1  CAGAACCTTATTCAAATTGTGCCCCCTGTGAGCTTTCTAGGTGTCTACAG  999
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  CAGAACCTTATTCAAATTGTG-CCCCTGTGAGCTTTCTA-GTGTCTACAG  998

seq1  GAGATGGCATTATGTGATTGAG-TCTGTAAGAAAATTTTTTTC-TCATCA  1047
      ||||| |||||||||||||||| |||||||||||||||||||| ||||||
seq2  GAGAT-GCATTATGTGATTGAGTTCTGTAAGAAAATTTTTTTCTTCATCA  1047

seq1  TTTCAAGTGT--GAATTCTA-TATTTAGAA-GCTCTGGTAAC-AAATAAT  1092
       |||||||||   ||||||| ||||||||| ||||||||||| |||||||
seq2  -TTCAAGTGTTGAAATTCTATTATTTAGAAGGCTCTGGTAACAAAATAAT  1096

seq1  TATGTTATTATTAATTATGAGGA-AAATT--ATATAGTTGTACTTGT-CA  1138
      |||||||||| || | ||||| | |||||  |||||||||||||||| ||
seq2  TATGTTATTAATATTAATGAGCACAAATTTAATATAGTTGTACTTGTCCA  1146

seq1  TTG--AAGAAAAAAGTCATTGATG  1160
      |||  |||||||||||||||||||
seq2  TTGGAAAGAAAAAAGTCATTGATG  1170


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