BAC Information

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BAC

Clone NameB6Ng01-219B15
Chromosome6 (Build37)
Map Location 107,424,014 - 107,579,388
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219B15.bB6Ng01-219B15.g
ACCGA035045GA035046
length4651,137
definitionB6Ng01-219B15.b B6Ng01-219B15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,578,918 - 107,579,388)(107,424,014 - 107,425,156)
sequence
aatagcacatctttatgttgttcattgctcccaaatggtggtgggttccc
ttttgggaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtttgt
ttttttgtgtatttttttatactctatctgaattaaacttgtggtccttt
tgttctagttggtggaatttcatggtggtttacagatattaaaattaaga
aaacacatttaaaatgaaaactacagcccatgttcacattgtctttgttg
gatgcaattgatttttcagctaatggtctttgggcttaacaggttattac
atttttattgacctttgctgtgagaactctaaatgtcctacatttgggtg
aactgtttgaaaactggctttctaagatgaggtttcatggcaaaaaggca
tatttttatcctttcatagatgacaaccctagcaaggcttgtttgattta
agaatatctcctgtg
gaattcctgagtatgtctaaactataggcaaagaaaaacagggaagtatt
tcattcattcatcaattcatccattcacccattcattcactcattcactc
attcactcatccaaaaacatttctttatcgacaagtatgcacttggcagt
tgttaagcgctggtgataaaagcatgaaacaaatcctgtttcaatcttca
gtgagctccctgtctagtgtgagacatttccacagcttgctgtaagaaaa
tataagcagtgtagagacagctgaatgcatgggttgcagctgctccaagc
cagctgttaggaagctagggagagcttctggaagaacgaaatgacagcta
ttgcaacaccagaggagaaaaccctatcatgcatgtccagggaaacagtc
ctagagaaggatggcttttgttctggaatcacagacagaggttagggatc
gggggaagaaataaagcttaagtctttggtggggtgcctatgtgtaagca
ggtccaacccaggtttgcctttctaagcattgtctctctctactgttgca
tccttgagaatgttcaagttgtactaccatggagatttgatttgtggatt
tggtagttgactcctacctagtccacagtactagcatcaaggaagaggaa
agaaacaacaaggtatattgcacctcctctgtgtaggccatgatataaag
tcagaagacacttttattcacaaataaatacatgataagggaaggattca
ccctctcccaacaggaatctgattagcttttcagctagaaaggtgccctg
ctgtccagaaaggacctgggaggaacacctgtcccaccacgtgcttgggg
cctgaaatacattctaaagctgagtgtaccaggctggtttccacagcacc
aggtaggtctgactccctttccctggttgggaaaccttcagtctctggag
ctcaagattttcccttggttttaagaacactcaacatttctagatttttt
tccctcttttaatggaaaacattcccttcggatccatttctatagaatat
agaaaccagactcattctctttttatcagaagcatcttgagcaattccct
actaggaagccctttcagtgtggtcctatgctgatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107578918_107579388
seq2: B6Ng01-219B15.b_45_515 (reverse)

seq1  CACAGGAGATCTTCTTAAATCAAACAAACCTTGCTTGGTTTCTCATCTAT  50
      |||||||||| |||||||||||||||| ||||||| || || ||||||||
seq2  CACAGGAGATATTCTTAAATCAAACAAGCCTTGCTAGGGTTGTCATCTAT  50

seq1  GAAAGGATAAAAATATGCCTTCTTACCATGAAACCTCATCTAAGAAAGCC  100
      ||||||||||||||||||||| || |||||||||||||||| ||||||||
seq2  GAAAGGATAAAAATATGCCTTTTTGCCATGAAACCTCATCTTAGAAAGCC  100

seq1  AGATTTCAAACAGCTCACCCAAATCTAGGACATTTAAAGTTCTCACAGCA  150
      || |||||||||| |||||||||| ||||||||||| |||||||||||||
seq2  AGTTTTCAAACAGTTCACCCAAATGTAGGACATTTAGAGTTCTCACAGCA  150

seq1  ACGGTCATTAAACATCTAATAACCTCTTATGCCCAAAGACCATTAGCTGA  200
      | ||||| |||| || ||||||||| ||| ||||||||||||||||||||
seq2  AAGGTCAATAAAAATGTAATAACCTGTTAAGCCCAAAGACCATTAGCTGA  200

seq1  AAACTCACTTGCATCCAACAAAGACAATCTGAACATGGGCTGTAGTTTTC  250
      ||| ||| |||||||||||||||||||| |||||||||||||||||||||
seq2  AAAATCAATTGCATCCAACAAAGACAATGTGAACATGGGCTGTAGTTTTC  250

seq1  ATTTTAAATGTGTTTTCTTACTTTTATTATCTGTAAACCACCATGAAATT  300
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  ATTTTAAATGTGTTTTCTTAATTTTAATATCTGTAAACCACCATGAAATT  300

seq1  CCACCAACTAGAACAAAAGGACCACAAGTTTAATTCAGATAGAGTATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAACTAGAACAAAAGGACCACAAGTTTAATTCAGATAGAGTATAAA  350

seq1  AAAATACACAAAAAAACAAACACACATACACACACACACACACACACACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACACAAAAAAACAAACACACATACACACACACACACACACACACA  400

seq1  CACACCTTCCCAAAAGGGAACCCACCACCATTTGGGAGCAATGAACAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTCCCAAAAGGGAACCCACCACCATTTGGGAGCAATGAACAACA  450

seq1  TAAAGATGTGCTATTGAATTC  471
      |||||||||||||||||||||
seq2  TAAAGATGTGCTATTGAATTC  471

seq1: chr6_107424014_107425156
seq2: B6Ng01-219B15.g_68_1204

seq1  GAATTCCTGAGTATGTCTAAACTATAGGCAAAGAAAAACAGGGAAGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGTATGTCTAAACTATAGGCAAAGAAAAACAGGGAAGTATT  50

seq1  TCATTCATTCATCAATTCATCCATTCACCCATTCATTCACTCATTCACTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCATCAATTCATCCATTCACCCATTCATTCACTCATTCACTC  100

seq1  ATTCACTCATCCAAAAACATTTCTTTATCGACAAGTATGCACTTGGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTCATCCAAAAACATTTCTTTATCGACAAGTATGCACTTGGCAGT  150

seq1  TGTTAAGCGCTGGTGATAAAAGCATGAAACAAATCCTGTTTCAATCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGCGCTGGTGATAAAAGCATGAAACAAATCCTGTTTCAATCTTCA  200

seq1  GTGAGCTCCCTGTCTAGTGTGAGACATTTCCACAGCTTGCTGTAAGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCCCTGTCTAGTGTGAGACATTTCCACAGCTTGCTGTAAGAAAA  250

seq1  TATAAGCAGTGTAGAGACAGCTGAATGCATGGGTTGCAGCTGCTCCAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCAGTGTAGAGACAGCTGAATGCATGGGTTGCAGCTGCTCCAAGC  300

seq1  CAGCTGTTAGGAAGCTAGGGAGAGCTTCTGGAAGAACGAAATGACAGCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTAGGAAGCTAGGGAGAGCTTCTGGAAGAACGAAATGACAGCTA  350

seq1  TTGCAACACCAGAGGAGAAAACCCTATCATGCATGTCCAGGGAAACAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACACCAGAGGAGAAAACCCTATCATGCATGTCCAGGGAAACAGTC  400

seq1  CTAGAGAAGGATGGCTTTTGTTCTGGAATCACAGACAGAGGTTAGGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAGGATGGCTTTTGTTCTGGAATCACAGACAGAGGTTAGGGATC  450

seq1  GGGGGAAGAAATAAAGCTTAAGTCTTTGGTGGGGTGCCTATGTGTAAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAAGAAATAAAGCTTAAGTCTTTGGTGGGGTGCCTATGTGTAAGCA  500

seq1  GGTCCAACCCAGGTTTGCCTTTCTAAGCATTGTCTCTCTCTACTGTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAACCCAGGTTTGCCTTTCTAAGCATTGTCTCTCTCTACTGTTGCA  550

seq1  TCCTTGAGAATGTTCAAGTTGTACTACCATGGAGATTTGATTTGTGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGAATGTTCAAGTTGTACTACCATGGAGATTTGATTTGTGGATT  600

seq1  TGGTAGTTGACTCCTACCTAGTCCACAGTACTAGCATCAAGGAAGAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTTGACTCCTACCTAGTCCACAGTACTAGCATCAAGGAAGAGGAA  650

seq1  AGAAACAACAAGGTATATTGCACCTCCTCTGTGTAGGCCATGATATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAACAAGGTATATTGCACCTCCTCTGTGTAGGCCATGATATAAAG  700

seq1  TCAGAAGACACTTTTATTCACAAATAAATACATGATAAGGGAAGGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGACACTTTTATTCACAAATAAATACATGATAAGGGAAGGATTCA  750

seq1  CCCTCTCCCAACAGGAATCTGATTAGCTTTTCAGCTAG-AAGGTGCCCTG  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCCTCTCCCAACAGGAATCTGATTAGCTTTTCAGCTAGAAAGGTGCCCTG  800

seq1  CTGTCCAGAAAGGACCT-GGAGGAACACCTGTCCCACCACGTGCTT-GGG  847
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  CTGTCCAGAAAGGACCTGGGAGGAACACCTGTCCCACCACGTGCTTGGGG  850

seq1  CCTGAAATACATTCTAAAGCTGAGTGTACCAGGCTGGTTTCCACAGCACC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAATACATTCTAAAGCTGAGTGTACCAGGCTGGTTTCCACAGCACC  900

seq1  AGGTAGGTCTGACTCCCTTCCCCTGG-TGGGAAACCTTCAGTCTCT-GAG  945
      ||||||||||||||||||| |||||| ||||||||||||||||||| |||
seq2  AGGTAGGTCTGACTCCCTTTCCCTGGTTGGGAAACCTTCAGTCTCTGGAG  950

seq1  CTCAAGATTTTCCCTT-GTTTTAAGGACACTCAACA-TTCTAGA-TTTTT  992
      |||||||||||||||| |||||||| |||||||||| ||||||| |||||
seq2  CTCAAGATTTTCCCTTGGTTTTAAGAACACTCAACATTTCTAGATTTTTT  1000

seq1  TCCCTCTTTTTAATGAAAACATTCCCTTCCGATTCCATTTTCTTATAGAA  1042
      |||||||||| |  ||||||||||||||| || |||||||   |||||||
seq2  TCCCTCTTTTAATGGAAAACATTCCCTTCGGA-TCCATTT--CTATAGAA  1047

seq1  TATTAGAAAACCCAGACTTCATTTCTCTTTATATCAAGAGCAATCTCTGA  1092
      || ||||||  |||||| ||| |||||||| |||||  ||| |||| |||
seq2  TA-TAGAAA--CCAGAC-TCA-TTCTCTTTTTATCAGAAGC-ATCT-TGA  1090

seq1  GCAATTCCCCTACTAGGAAGCCCTTCTCAGTGTGGGTCAGAATGCTGATC  1142
      |||||| |||||||||||||||||| |||||||||  |   |||||||||
seq2  GCAATT-CCCTACTAGGAAGCCCTT-TCAGTGTGGTCC--TATGCTGATC  1136

seq1  G  1143
      |
seq2  G  1137