BAC Information

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BAC

Clone NameB6Ng01-220B18
Chromosome6 (Build37)
Map Location 32,003,830 - 32,127,459
singlet/doubletdoublet
Overlap gene1700012A03Rik, Plxna4
Upstream geneLOC100038973, AB041803, Mkln1, Podxl, EG619959, LOC620104
Downstream geneChchd3, LOC100039118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B18.bB6Ng01-220B18.g
ACCGA035752GA035753
length1,143974
definitionB6Ng01-220B18.b B6Ng01-220B18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,126,304 - 32,127,459)(32,003,830 - 32,004,776)
sequence
gaattctgggtacgaggagggttgttgactcctagcaacacgagggcagg
gtgaaagacccccagaagccctacacatccatccaccctctaagctggct
tccactaagctgaataggacagatgggcttctatgattttgcacaaatcc
agggtgattttcaccctcacccgtcccccgaattccacttccagccacat
tctgatgcctaaagatcccaagcctcaggaagttctgttagctctttaaa
tgtctaatatcccctctaaaccctgtctcctcccactaggcttaagacta
gatgtgaacaggagcctgtgcacctcttcttgcagtagcgtctctaagtg
tcttgttcttagggcacaaaggaggctttgcagcagggaacatgggtgta
tattccatgcatgtatcccacagcactagtccctagcactcaggtatatg
acgatgtatatttaacctatatctgctgccttgaggagccccatagacta
atggaacaaaggccccattagagccagaggggaatgaaatggctccagta
cggaaagtctctagtgctaatctctctcagaccattccagaggcctctct
aatgactgagtgggagaaccaggaagtgtccacatttcttttcttacttt
atctatgggcccaggatggggctacctacccctctgctcctcagcactaa
tatctgtgaagagagttgatgcctggggaaaggtgatcgagaggaggggt
gctgggagataaagggagtcctgaacgtgccctgtgcttgggaacacggt
ggcttcctaaggaggcaagcagtagccaactccacttgaagagcagctca
gttgctactagggagtggcttctctgatgatacattaggagccgattggg
tggctgtgtgagcatcaggcctgatggagttaaggatgggaccagtgtta
cacatcagactccaagcagaggaactgtgtcccttctacactgctgctat
cctggagagattgggtgagtcatgatgctgctatgactgatcttcccttc
ctagggacctcccacctgttagttgggagaagaaagaaacactgcctagt
ttagagattctctcagagatcgaggaattcaaacccatcaaat

tgtcaatgagaatgactgttgaagttgacacacaggtttacattttatat
ccaaaccacaagaaagggataaaaaggagaggacacaatgaccaaagaat
aaataggcctccatcaagtgaacaacatgcctaggtcaagactgtccctt
cagaatggcaactgctcaattacataaaaaaaaaatgttgttgttggagt
gacccacagttcagtgaacacaggactgtgtagcctaggaaggggaccca
ataggggtgtgactaagcatactcttagagcagcggaaccaggttgttag
gctctgggttctctcccaatactgcctttaccttacaaaggacactgtca
aggaagtgagagtcatggaaagtctttgcagggcctattcacctctacct
ccttcaccttgtatttgggtcaggcagtactcagttactcatgcaagatt
ctttttttttttttttaacattttttgtttatttttattttttatgagta
ttgttttattagatattttctttatatacatttcaaatgctatcctgaaa
gttccctatactctccccctaccctgctaccctacccacccactcccact
tcttggccctggcattcccctggactggggcatataaagtttgcaatacc
aaggggcctctcttcccagtgatggccgactaggccatcttctgctgcat
catatgcagctagagatatgagctctgggggtactggttagttcatattg
ttgttccacctatagggttgaagaccccttcagctccttgagtgctttct
ctagcttctccattgggggccctgtgttccatcttatagatgactgtgag
catctactttctgtatttgccaggcactggcatagcctcataagagacag
ctataccaaggtcctttcagcaaaatctgctggcaatatgcatagtgtct
gggttggtggctgatatgggatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_32126304_32127459
seq2: B6Ng01-220B18.b_42_1184 (reverse)

seq1  ATTTGATGGGTTTGCA-TCCTCTGATCTCTGAGGGAAGAAATTCTCTAAA  49
      |||||||||||||| | ||||| |||||||||| |||     ||||| ||
seq2  ATTTGATGGGTTTGAATTCCTC-GATCTCTGAGAGAA-----TCTCT-AA  43

seq1  ACTAGCAGGTGTTTTCTTTCCTCTCCC-ACTTACAGGGTGGGAGGTCCCT  98
      |||||   ||| |||||||| |||||| ||| ||| ||||||||||||||
seq2  ACTAGGCAGTG-TTTCTTTCTTCTCCCAACTAACA-GGTGGGAGGTCCCT  91

seq1  AGGAAGGGAAGATCAGTCATAAGCAGCAACCATTGACTCACCCAATCTCT  148
      |||||||||||||||||||| ||||||| |   |||||||||||||||||
seq2  AGGAAGGGAAGATCAGTCAT-AGCAGCATC--ATGACTCACCCAATCTCT  138

seq1  CCAGGATAGCCAGCAGGTGTAGGAAGGGACACAGTTCCTCTGCTTGGAGT  198
      ||||||||| ||||| ||||| ||||||||||||||||||||||||||||
seq2  CCAGGATAG-CAGCA-GTGTA-GAAGGGACACAGTTCCTCTGCTTGGAGT  185

seq1  CTGATGTGTAACACTGGTCCCATCCTTAACTCCATCAGGCCTGATGCTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTGTAACACTGGTCCCATCCTTAACTCCATCAGGCCTGATGCTCA  235

seq1  CACAGCCACCCAATCGGCTCCTAATGTATCATCAGAGAAGCCACTCCCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCACCCAATCGGCTCCTAATGTATCATCAGAGAAGCCACTCCCTA  285

seq1  GTAGCAACTGAGCTGCTCTTCAAGTGGAGTTGGCTACTGCTTGCCTCCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAACTGAGCTGCTCTTCAAGTGGAGTTGGCTACTGCTTGCCTCCTT  335

seq1  AGGAAGCCACCGTGTTCCCAAGCACAGGGCACGTTCAGGACTCCCTTTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCCACCGTGTTCCCAAGCACAGGGCACGTTCAGGACTCCCTTTAT  385

seq1  CTCCCAGCACCCCTCCTCTCGATCACCTTTCCCCAGGCATCAACTCTCTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGCACCCCTCCTCTCGATCACCTTTCCCCAGGCATCAACTCTCTT  435

seq1  CACAGATATTAGTGCTGAGGAGCAGAGGGGTAGGTAGCCCCATCCTGGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATATTAGTGCTGAGGAGCAGAGGGGTAGGTAGCCCCATCCTGGGC  485

seq1  CCATAGATAAAGTAAGAAAAGAAATGTGGACACTTCCTGGTTCTCCCACT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATAAAGTAAGAAAAGAAATGTGGACACTTCCTGGTTCTCCCACT  535

seq1  CAGTCATTAGAGAGGCCTCTGGAATGGTCTGAGAGAGATTAGCACTAGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATTAGAGAGGCCTCTGGAATGGTCTGAGAGAGATTAGCACTAGAG  585

seq1  ACTTTCCGTACTGGAGCCATTTCATTCCCCTCTGGCTCTAATGGGGCCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCGTACTGGAGCCATTTCATTCCCCTCTGGCTCTAATGGGGCCTT  635

seq1  TGTTCCATTAGTCTATGGGGCTCCTCAAGGCAGCAGATATAGGTTAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATTAGTCTATGGGGCTCCTCAAGGCAGCAGATATAGGTTAAATA  685

seq1  TACATCGTCATATACCTGAGTGCTAGGGACTAGTGCTGTGGGATACATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCGTCATATACCTGAGTGCTAGGGACTAGTGCTGTGGGATACATGC  735

seq1  ATGGAATATACACCCATGTTCCCTGCTGCAAAGCCTCCTTTGTGCCCTAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATACACCCATGTTCCCTGCTGCAAAGCCTCCTTTGTGCCCTAA  785

seq1  GAACAAGACACTTAGAGACGCTACTGCAAGAAGAGGTGCACAGGCTCCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACACTTAGAGACGCTACTGCAAGAAGAGGTGCACAGGCTCCTG  835

seq1  TTCACATCTAGTCTTAAGCCTAGTGGGAGGAGACAGGGTTTAGAGGGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATCTAGTCTTAAGCCTAGTGGGAGGAGACAGGGTTTAGAGGGGAT  885

seq1  ATTAGACATTTAAAGAGCTAACAGAACTTCCTGAGGCTTGGGATCTTTAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGACATTTAAAGAGCTAACAGAACTTCCTGAGGCTTGGGATCTTTAG  935

seq1  GCATCAGAATGTGGCTGGAAGTGGAATTCGGGGGACGGGTGAGGGTGAAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGAATGTGGCTGGAAGTGGAATTCGGGGGACGGGTGAGGGTGAAA  985

seq1  ATCACCCTGGATTTGTGCAAAATCATAGAAGCCCATCTGTCCTATTCAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCCTGGATTTGTGCAAAATCATAGAAGCCCATCTGTCCTATTCAGC  1035

seq1  TTAGTGGAAGCCAGCTTAGAGGGTGGATGGATGTGTAGGGCTTCTGGGGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGGAAGCCAGCTTAGAGGGTGGATGGATGTGTAGGGCTTCTGGGGG  1085

seq1  TCTTTCACCCTGCCCTCGTGTTGCTAGGAGTCAACAACCCTCCTCGTACC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCACCCTGCCCTCGTGTTGCTAGGAGTCAACAACCCTCCTCGTACC  1135

seq1  CAGAATTC  1156
      ||||||||
seq2  CAGAATTC  1143


seq1: chr6_32003830_32004776
seq2: B6Ng01-220B18.g_78_1024

seq1  TGTCAATGAGAATGACTGTTGAAGTTGACACACAGGTTTACATTTTATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATGAGAATGACTGTTGAAGTTGACACACAGGTTTACATTTTATAT  50

seq1  CCAAACCACAAGAAAGGGATAAAAAGGAGAGGACACAATGACCAAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCACAAGAAAGGGATAAAAAGGAGAGGACACAATGACCAAAGAAT  100

seq1  AAATAGGCCTCCATCAAGTGAACAACATGCCTAGGTCAAGACTGTCCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGCCTCCATCAAGTGAACAACATGCCTAGGTCAAGACTGTCCCTT  150

seq1  CAGAATGGCAACTGCTCAATTACATAAAAAAAAAATGTTGTTGTTGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGCAACTGCTCAATTACATAAAAAAAAAATGTTGTTGTTGGAGT  200

seq1  GACCCACAGTTCAGTGAACACAGGACTGTGTAGCCTAGGAAGGGGACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCACAGTTCAGTGAACACAGGACTGTGTAGCCTAGGAAGGGGACCCA  250

seq1  ATAGGGGTGTGACTAAGCATACTCTTAGAGCAGCGGAACCAGGTTGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGTGTGACTAAGCATACTCTTAGAGCAGCGGAACCAGGTTGTTAG  300

seq1  GCTCTGGGTTCTCTCCCAATACTGCCTTTACCTTACAAAGGACACTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGGTTCTCTCCCAATACTGCCTTTACCTTACAAAGGACACTGTCA  350

seq1  AGGAAGTGAGAGTCATGGAAAGTCTTTGCAGGGCCTATTCACCTCTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGAGAGTCATGGAAAGTCTTTGCAGGGCCTATTCACCTCTACCT  400

seq1  CCTTCACCTTGTATTTGGGTCAGGCAGTACTCAGTTACTCATGCAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCACCTTGTATTTGGGTCAGGCAGTACTCAGTTACTCATGCAAGATT  450

seq1  CTTTTTTTTTTTTTTTAACATTTTTTGTTTATTTTTATTTTTTATGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTAACATTTTTTGTTTATTTTTATTTTTTATGAGTA  500

seq1  TTGTTTTATTAGATATTTTCTTTATATACATTTCAAATGCTATCCTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTAGATATTTTCTTTATATACATTTCAAATGCTATCCTGAAA  550

seq1  GTTCCCTATACTCTCCCCCTACCCTGCTACCCTACCCACCCACTCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTATACTCTCCCCCTACCCTGCTACCCTACCCACCCACTCCCACT  600

seq1  TCTTGGCCCTGGCATTCCCCTGGACTGGGGCATATAAAGTTTGCAATACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCCTGGCATTCCCCTGGACTGGGGCATATAAAGTTTGCAATACC  650

seq1  AAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTGCTGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCCTCTCTTCCCAGTGATGGCCGACTAGGCCATCTTCTGCTGCAT  700

seq1  CATATGCAGCTAGAGATATGAGCTCTGGGGGTACTGGTTAGTTCATATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCAGCTAGAGATATGAGCTCTGGGGGTACTGGTTAGTTCATATTG  750

seq1  TTGTTCCACCTATAGGGTTGAAGACCCCTTCAGCTCCTTGAGTGCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCACCTATAGGGTTGAAGACCCCTTCAGCTCCTTGAGTGCTTTCT  800

seq1  CTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGACTGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTCTCCATTGGGGGCCCTGTGTTCCATCTTATAGATGACTGTGAG  850

seq1  CATCTAC-TTCTGTATTTGCCAGGCACTGGCATAGCCTCATAAGAGACAG  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACTTTCTGTATTTGCCAGGCACTGGCATAGCCTCATAAGAGACAG  900

seq1  CTATACCAAGGTCCCTTCAGCAAAATCTTGCTGGC-ATATGCAATAGTG  947
      |||||||||||||| |||||||||||| ||||||| |||||| ||||||
seq2  CTATACCAAGGTCCTTTCAGCAAAATC-TGCTGGCAATATGC-ATAGTG  947


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