BAC Information

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BAC

Clone NameB6Ng01-221I12
Chromosome6 (Build37)
Map Location 111,243,747 - 111,400,730
singlet/doubletdoublet
Overlap geneGrm7
Upstream genenone
Downstream gene1700054K19Rik, Lmcd1, D630042P16Rik, LOC619975
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221I12.bB6Ng01-221I12.g
ACCGA036797GA036798
length1,1141,113
definitionB6Ng01-221I12.b B6Ng01-221I12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,243,747 - 111,244,836)(111,399,639 - 111,400,730)
sequence
gaattcaattgaactgtcagctttttcagactagcctggaaatacaaaga
atctccaacctaattgctttaattaatgaatgcggagataaggcgacccg
cagagagaaacgctgcaatttctccagcattagggctgcctctggtagca
ggctaatggcaatcagttctctatggatgagcacttggtgaatcagctga
tgctatttgggctatgggccataactctgatgtgagaaaatgtggacagt
gactggcttgtccctagctcagcaaagcttttaaattgtttgggaaactg
gattcaaacaaataaaatattttgagaattaatcttttttttaaatgtat
gtcaaaaataattccatgatttatttttaattctgtgatattttgagggt
agaatcagatgatggagattttatactgctaggtggctgagtaggcagat
taagggccaatctagtaggggaggtgtcttaactactttgcttaaactta
ataaattatttcaaatcactgttctatttattctttcctctggaatagaa
tatttgtttacaagtggatgaaagcacacatggatggatgaatagatgga
taaaagggggagttgcacaactggccaaaaatgcttagcatgctttgctg
ctttctaaccactgaaatcttttctgtgtagcatatcttgtttctatctc
ttataacagacacatccttctcttttagttatatccaagctatagtatta
taatttacttcctagtatcaactctagaccacagtattttaaaagaactc
actctgtttttctagcaactactatgtttccaataaataatcttaattta
tgtttacatgttttgcctgcattttattatgtatgtatactaccttgcaa
tacctggtacctgttggaaggccacaaaatgtcatctgattttgaggaac
tggatttatgattgggttaaaagtctctcatatgggatcctgtgaaagcc
aactacgattctgcagaagttacatgtaactggttaacctactgtatcta
tctcttcttatctacatgccattaatgtttatcttcttacagatgcgact
tctagaacagaaac
gaattcaaaggaggataagtagtctctggcacaaacaggaatgcttttca
ctgttttgtagagatcagccctttattgaagaggggaatcttggcagtgg
tgtagatatggagtgttatcccagcaggtaacaatatagtgtgccaaaag
tcctaaatcgagagcatgtctaatatgtgaagaattcccttgttccattt
tacagatagaatggaaccatacatgacgatacgtacttttacatcctcag
gctgttgtttaatggaaagggctcactgagactacatgtcaacatattag
tacagttgatctcaaaggacactcagattctaaactgcacaagacttgct
ttttcccataatcttacagttgactgttaagttgagtagacttgagtgtt
tgcattaaaatgacctataggacccagtagactcccatcagctccattct
tcacagaatcatttccctgccagggagccttaaaagacaagctataattt
tggatacatattgctgcttgaaagtgagatgtccatcccaggatcacatg
tttgaatacttggtagccaggccgaggagttgtttgggaaaattgtggac
cttttaggaactgagacctagatggagaaactaggtgtctgagaggttgg
ccctggggctttacaatctggcctcactgtgggtctcgtctctcttctgt
gtctttgattgttgctgtgattcattaagcagcatgcactcccagcaagc
accgcaaggccttcccctgataaagatgtgtctcaaagcatcacacaaaa
taatggcttctcttaaatttcatcttgtccctgtatttactcattcctgt
tttcccttcacatttcaaatatgtgtcagattgctgggctgtgtgatcat
ttgaaggtaaaactggttcctttggatattagaataaagcacttgccctt
tctttcaatttggcttactgttatgcctcttggagggaaatatgtttccg
ttggttttcaccccctaaaaaaaggtgagtcagaaatgatcagttaagac
ttgcgtgcaattacaagagaatgtggcactggggtaaaagtagatggtgg
agactcaattcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_111243747_111244836
seq2: B6Ng01-221I12.b_41_1154

seq1  GAATTCAATTGAACTGTCAGCTTTTTCAGACTAGCCTGGAAATACAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTGAACTGTCAGCTTTTTCAGACTAGCCTGGAAATACAAAGA  50

seq1  ATCTCCAACCTAATTGCTTTAATTAATGAATGCGGAGATAAGGCGACCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAACCTAATTGCTTTAATTAATGAATGCGGAGATAAGGCGACCCG  100

seq1  CAGAGAGAAACGCTGCAATTTCTCCAGCATTAGGGCTGCCTCTGGTAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAACGCTGCAATTTCTCCAGCATTAGGGCTGCCTCTGGTAGCA  150

seq1  GGCTAATGGCAATCAGTTCTCTATGGATGAGCACTTGGTGAATCAGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGGCAATCAGTTCTCTATGGATGAGCACTTGGTGAATCAGCTGA  200

seq1  TGCTATTTGGGCTATGGGCCATAACTCTGATGTGAGAAAATGTGGACAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTGGGCTATGGGCCATAACTCTGATGTGAGAAAATGTGGACAGT  250

seq1  GACTGGCTTGTCCCTAGCTCAGCAAAGCTTTTAAATTGTTTGGGAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTGTCCCTAGCTCAGCAAAGCTTTTAAATTGTTTGGGAAACTG  300

seq1  GATTCAAACAAATAAAATATTTTGAGAATTAATCTTTTTTTTAAATGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAACAAATAAAATATTTTGAGAATTAATCTTTTTTTTAAATGTAT  350

seq1  GTCAAAAATAATTCCATGATTTATTTTTAATTCTGTGATATTTTGAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAATAATTCCATGATTTATTTTTAATTCTGTGATATTTTGAGGGT  400

seq1  AGAATCAGATGATGGAGATTTTATACTGCTAGGTGGCTGAGTAGGCAGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGATGATGGAGATTTTATACTGCTAGGTGGCTGAGTAGGCAGAT  450

seq1  TAAGGGCCAATCTAGTAGGGGAGGTGTCTTAACTACTTTGCTTAAACTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGCCAATCTAGTAGGGGAGGTGTCTTAACTACTTTGCTTAAACTTA  500

seq1  ATAAATTATTTCAAATCACTGTTCTATTTATTCTTTCCTCTGGAATAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATTTCAAATCACTGTTCTATTTATTCTTTCCTCTGGAATAGAA  550

seq1  TATTTGTTTACAAGTGGATGAAAGCACACATGGATGGATGAATAGATGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTACAAGTGGATGAAAGCACACATGGATGGATGAATAGATGGA  600

seq1  TAAAAGGGGGAGTTGCACAACTGGCCAAAAATGCTTAGCATGCTTTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGGGAGTTGCACAACTGGCCAAAAATGCTTAGCATGCTTTGCTG  650

seq1  CTTTCTAACCACTGAAATC-TTTCTGTGTAGCATATCTTG-TTCTATCTC  698
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CTTTCTAACCACTGAAATCTTTTCTGTGTAGCATATCTTGTTTCTATCTC  700

seq1  TTATAACAGACACATCCTTCTC-TTTAGTTATATCCAAGCTATAGTATTA  747
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTATAACAGACACATCCTTCTCTTTTAGTTATATCCAAGCTATAGTATTA  750

seq1  TAA-TTACTTCCTAGTATCAACTCTAGACCACAGTA-TTTAAAAGAACTC  795
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATTTACTTCCTAGTATCAACTCTAGACCACAGTATTTTAAAAGAACTC  800

seq1  ACT-TG-TTTTCTAGCAACTACTATG-TTCCAATAAATAATCTTAATTTA  842
      ||| || ||||||||||||||||||| |||||||||||||||||||||||
seq2  ACTCTGTTTTTCTAGCAACTACTATGTTTCCAATAAATAATCTTAATTTA  850

seq1  TGTTTACATGTTTTGCCTGCA-TTTATTATGTATGTATACTACC-TGC-A  889
      ||||||||||||||||||||| |||||||||||||||||||||| ||| |
seq2  TGTTTACATGTTTTGCCTGCATTTTATTATGTATGTATACTACCTTGCAA  900

seq1  TACCTGGTACCTGT--GGAGGCCACAAAAGGTCATCTGATTTTGAGGAAC  937
      ||||||||||||||  | ||||||||||| ||||||||||||||||||||
seq2  TACCTGGTACCTGTTGGAAGGCCACAAAATGTCATCTGATTTTGAGGAAC  950

seq1  TGGATTTATGAAT-GGTTAAAAGTCTC-CATAT-GGATCCTG-GGAAGCC  983
      ||||||||||| | ||||||||||||| ||||| |||||||| | |||||
seq2  TGGATTTATGATTGGGTTAAAAGTCTCTCATATGGGATCCTGTGAAAGCC  1000

seq1  AACTACGA-TCTGCAAGAAG-TACATGT-ACTGG-TAACC-ACTGTA-CC  1027
      |||||||| ||||| ||||| ||||||| ||||| ||||| |||||| | 
seq2  AACTACGATTCTGC-AGAAGTTACATGTAACTGGTTAACCTACTGTATCT  1049

seq1  ATCTCT--CTATCACCACACCAT--ATGGTTATC-TCTTACAAGATGCGA  1072
      ||||||   ||||  ||  ||||  ||| ||||| |||||| ||||||||
seq2  ATCTCTTCTTATCTACATGCCATTAATGTTTATCTTCTTAC-AGATGCGA  1098

seq1  TTTCCTAGGAACAGAAAC  1090
       || ||| ||||||||||
seq2  CTT-CTA-GAACAGAAAC  1114

seq1: chr6_111399639_111400730
seq2: B6Ng01-221I12.g_66_1178 (reverse)

seq1  CTGTATTGAGTCTC--ACATCTACTTTTTCCCC--TGCCACATTCTCTTG  46
      ||| ||||||||||   ||||||||||| ||||  |||||||||||||||
seq2  CTGAATTGAGTCTCCACCATCTACTTTTACCCCAGTGCCACATTCTCTTG  50

seq1  TAATTGCACAC-AGTCTTACCTGATCA-TTCTGACTCACCTTTTTTT-GG  93
      ||||||||| | ||||||| ||||||| ||||||||||||||||||| ||
seq2  TAATTGCACGCAAGTCTTAACTGATCATTTCTGACTCACCTTTTTTTAGG  100

seq1  GGGTGAAAA-CAACGGAAACATAATTTCCTTC-AGAGGCAT-ACAGTTAG  140
      ||||||||| ||||||||||||| || ||| | |||||||| ||||| ||
seq2  GGGTGAAAACCAACGGAAACATATTTCCCTCCAAGAGGCATAACAGTAAG  150

seq1  CC-AATTGAAAG-AAGGGCAAGTGGCTTTTTCTAAATAT-CAAAGGAA-C  186
      || ||||||||| |||||||||||  || |||| ||||| |||||||| |
seq2  CCAAATTGAAAGAAAGGGCAAGTGCTTTATTCT-AATATCCAAAGGAACC  199

seq1  AGTTTTACC-TCAAATGATCACACAGCCCAGCATACTGACACATATTTG-  234
      ||||||||| |||||||||||||||||||||||  |||||||||||||| 
seq2  AGTTTTACCTTCAAATGATCACACAGCCCAGCAATCTGACACATATTTGA  249

seq1  AATGTGAAGGGAAAACAGGAATGAGTAAATACA-GGACAAGATGAAATTT  283
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATGTGAAGGGAAAACAGGAATGAGTAAATACAGGGACAAGATGAAATTT  299

seq1  AAGAG-AGCCATTATTTTGTGTGATGCTTTGAGACACATCTTTATCA-GG  331
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  AAGAGAAGCCATTATTTTGTGTGATGCTTTGAGACACATCTTTATCAGGG  349

seq1  GAAGGCCTTGCGGTGCTTGCTGGGAGTGCATGCTGCTTAATGAATCACAG  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCTTGCGGTGCTTGCTGGGAGTGCATGCTGCTTAATGAATCACAG  399

seq1  CAACAATC-AAGACACAG-AGAGAGACGAGACCCACAGTGAGGCCAGATT  429
      |||||||| ||||||||| |||||||||||||||||||||||||||||||
seq2  CAACAATCAAAGACACAGAAGAGAGACGAGACCCACAGTGAGGCCAGATT  449

seq1  GT-AAGCCCCAGGGCCAACCTCTCAGACACCTAGTTTCTCCATCTAGGTC  478
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCCCCAGGGCCAACCTCTCAGACACCTAGTTTCTCCATCTAGGTC  499

seq1  TCAGTTCCTAAAAGGTCCACAATTTTCCCAAACAACTCCTCGGCCTGGCT  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCTAAAAGGTCCACAATTTTCCCAAACAACTCCTCGGCCTGGCT  549

seq1  ACCAAGTATTCAAACATGTGATCCTGGGATGGACATCTCACTTTCAAGCA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTATTCAAACATGTGATCCTGGGATGGACATCTCACTTTCAAGCA  599

seq1  GCAATATGTATCCAAAATTATAGCTTGTCTTTTAAGGCTCCCTGGCAGGG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATGTATCCAAAATTATAGCTTGTCTTTTAAGGCTCCCTGGCAGGG  649

seq1  AAATGATTCTGTGAAGAATGGAGCTGATGGGAGTCTACTGGGTCCTATAG  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATTCTGTGAAGAATGGAGCTGATGGGAGTCTACTGGGTCCTATAG  699

seq1  GTCATTTTAATGCAAACACTCAAGTCTACTCAACTTAACAGTCAACTGTA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTAATGCAAACACTCAAGTCTACTCAACTTAACAGTCAACTGTA  749

seq1  AGATTATGGGAAAAAGCAAGTCTTGTGCAGTTTAGAATCTGAGTGTCCTT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGGGAAAAAGCAAGTCTTGTGCAGTTTAGAATCTGAGTGTCCTT  799

seq1  TGAGATCAACTGTACTAATATGTTGACATGTAGTCTCAGTGAGCCCTTTC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATCAACTGTACTAATATGTTGACATGTAGTCTCAGTGAGCCCTTTC  849

seq1  CATTAAACAACAGCCTGAGGATGTAAAAGTACGTATCGTCATGTATGGTT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAACAACAGCCTGAGGATGTAAAAGTACGTATCGTCATGTATGGTT  899

seq1  CCATTCTATCTGTAAAATGGAACAAGGGAATTCTTCACATATTAGACATG  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTATCTGTAAAATGGAACAAGGGAATTCTTCACATATTAGACATG  949

seq1  CTCTCGATTTAGGACTTTTGGCACACTATATTGTTACCTGCTGGGATAAC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGATTTAGGACTTTTGGCACACTATATTGTTACCTGCTGGGATAAC  999

seq1  ACTCCATATCTACACCACTGCCAAGATTCCCCTCTTCAATAAAGGGCTGA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATATCTACACCACTGCCAAGATTCCCCTCTTCAATAAAGGGCTGA  1049

seq1  TCTCTACAAAACAGTGAAAAGCATTCCTGTTTGTGCCAGAGACTACTTAT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAAAACAGTGAAAAGCATTCCTGTTTGTGCCAGAGACTACTTAT  1099

seq1  CCTCCTTTGAATTC  1092
      ||||||||||||||
seq2  CCTCCTTTGAATTC  1113