BAC Information

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BAC

Clone NameB6Ng01-221M09
Chromosome6 (Build37)
Map Location 75,504,532 - 75,530,498
singlet/doubletdoublet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M09.bB6Ng01-221M09.g
ACCGA036971GA036972
length1,222945
definitionB6Ng01-221M09.b B6Ng01-221M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,504,532 - 75,505,770)(75,529,961 - 75,530,498)
sequence
gaattctcatttattagtgataatattctcagtgccatgagtaaaccaaa
aacagagctttaaaagacattaaagaaacttgtgtagattgggaagatcg
agctggtctttgtacagaacatttatactaaaaaaaaaaatgttatttct
tcaaagacatcttgtaggctttggaagaccaaagtagatactgaaatctg
tttcaagccctcatttttctgctgtatttattattgttttattgtttctt
aattgtttctattatcatgaaaattgatttcattatagcatgtttatata
aatatatgattgtacattgctcatacttatgctccaaatattctttcatc
tgtcaatttaggttcccttattaaccataagtagttcttttctgctctcc
cctctctgcctctatgtgtgtatatgtgtctgtctctctatttgtctgtc
tgtttctgtgtcttcgttgcttttcttctatctttctgtctctctgtcac
tctttctgtctctgtctgactctattactatcaaaaacatatatacaggt
aaactgcaattctaagtataataaaaaatgtaaaggttaggtgattaact
accctttcccttttcgttatatctctagacatacaaaaatatttaatatt
tcatttttatgttttttaaatgcatgtgtctgtgtgagcaagtgccatgc
atgtgaagtatctgaaaaaaacattacaggatactggctccataagaggt
gaatttacagtttctctacaacaagacatgagttcggagaagcaaattgt
ggacctctgtaaaagcagaagacacacttcaccatttagccatctctcca
tccctataaagagatttttgtaagaatggcaaacataaatattcacaaat
gtaaatttatacatcacgaactaattaaatttaaactgcataatattaaa
attgtgattggtattgtcactatatttatatgtactgcatagaaaatatt
tattaaatgtaagagatccttcagcattgaatagatgcatctactgatta
tctaaggagaaaaaagttgaatccgtgattagagttgtcaagcaaccttg
ctaatacattaaacgatgttagaaataaatggagttataggcaatcatga
ccctatttgtctcatgatgtaaaccttccattgaagattgacagatttct
gacttatcttgtgcaatgcatg

gaattcctcttccattccccgtctgttcttctcctagcagacacattctc
tcccactgaggacaaataaggatctctcttggggaatggataccatagtc
agtctacagctttagggaatagcctctgctccatttgttggggaatacac
atggatactgagctgtacttctactacatatgtgtcaggcacctctgtac
attctatgcatgctatttagttagtggctcagtctctgagagctttcagg
cgttcaggttacttgattttgttggttttcctatgaggctcctatcccct
tcagggtcttcaattcttcatccaatctgaagagggattattgtgtggga
accagacagatgcctaatgggaaagaagtgaaccataaaaggagaaagat
aaacaaaattttgtttaataagaagctagattgtttttttaaaatccatg
taaatataaacacatccattagtaattttttctgttgctgtagttaacat
attacagacaagagcaagtttatgttggcttacagtctcaaaggacaggg
aaagatggcagcaagcataaagcacagtagctggttcaggaagctgagaa
ctcacatacttaaaatgaatatcattcaaagagaacaaattagagattgg
acaagaatataaaacaccaaagcctatctctagaagacaactttcctcca
gctaagctgaacaacctaaccttccctgaaacagcagtactgacttataa
ccaagttttcaattacccaactccatggagggatatctttcattcaacca
ccaaaatatttatttttacaagaagtaagaaagggagagaaatgtgtgat
acgaaagaaataaagaatggtagaattgaggattttaatgagtcaggaat
gaagcccaggaaaagaaaaattgcagtaaatgtcaataaaggtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_75504532_75505770
seq2: B6Ng01-221M09.b_50_1271

seq1  GAATTCTCATTTATTAGTGATAATATTCTCAGTGCCATGAGTAAACCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTATTAGTGATAATATTCTCAGTGCCATGAGTAAACCAAA  50

seq1  AACAGAGCTTTAAAAGACATTAAAGAAACTTGTGTAGATTGGGAAGATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGCTTTAAAAGACATTAAAGAAACTTGTGTAGATTGGGAAGATCG  100

seq1  AGCTGGTCTTTGTACAGAACATTTATACTAAAAAAAAAAATGTTATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGTCTTTGTACAGAACATTTATACTAAAAAAAAAAATGTTATTTCT  150

seq1  TCAAAGACATCTTGTAGGCTTTGGAAGACCAAAGTAGATACTGAAATCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGACATCTTGTAGGCTTTGGAAGACCAAAGTAGATACTGAAATCTG  200

seq1  TTTCAAGCCCTCATTTTTCTGCTGTATTTATTATTGTTTTATTGTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGCCCTCATTTTTCTGCTGTATTTATTATTGTTTTATTGTTTCTT  250

seq1  AATTGTTTCTATTATCATGAAAATTGATTTCATTATAGCATGTTTATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTCTATTATCATGAAAATTGATTTCATTATAGCATGTTTATATA  300

seq1  AATATATGATTGTACATTGCTCATACTTATGCTCCAAATATTCTTTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGATTGTACATTGCTCATACTTATGCTCCAAATATTCTTTCATC  350

seq1  TGTCAATTTAGGTTCCCTTATTAACCATAAGTAGTTCTTTTCTGCTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAATTTAGGTTCCCTTATTAACCATAAGTAGTTCTTTTCTGCTCTCC  400

seq1  CCTCTCTGCCTCTATGTGTGTATATGTGTCTGTCTCTCTATTTGTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTGCCTCTATGTGTGTATATGTGTCTGTCTCTCTATTTGTCTGTC  450

seq1  TGTTTCTGTGTCTTCGTTGCTTTTCTTCTATCTTTCTGTCTCTCTGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGTCTTCGTTGCTTTTCTTCTATCTTTCTGTCTCTCTGTCAC  500

seq1  TCTTTCTGTCTCTGTCTGACTCTATTACTATCAAAAACATATATACAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGTCTCTGTCTGACTCTATTACTATCAAAAACATATATACAGGT  550

seq1  AAACTGCAATTCTAAGTATAATAAAAAATGTAAAGGTTAGGTGATTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAATTCTAAGTATAATAAAAAATGTAAAGGTTAGGTGATTAACT  600

seq1  ACCCTTTCCCTTTTCGTTATATCTCTAGACATACAAAAATATTTAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTCCCTTTTCGTTATATCTCTAGACATACAAAAATATTTAATATT  650

seq1  TCATTTTTATGTTTTTTAAATGCATGTGTCTGTGTGAGCAAGTGCCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTATGTTTTTTAAATGCATGTGTCTGTGTGAGCAAGTGCCATGC  700

seq1  ATGTGAAGTATCTGAAAAAAACATTACAGGATACTGGCTCCATAAGAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAGTATCTGAAAAAAACATTACAGGATACTGGCTCCATAAGAGGT  750

seq1  GAATTTACAGTTTCTCTACAACAAGACATGAGTTCGGAGAAGCAAATTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTACAGTTTCTCTACAACAAGACATGAGTTCGGAGAAGCAAATTGT  800

seq1  GGACCTCTGTAAAAGCAGAAGACACACTTCACCATTTAGCCATCTCTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCTGTAAAAGCAGAAGACACACTTCACCATTTAGCCATCTCTCCA  850

seq1  TCCCTATAAAGAGATTTTTGTAAGAATGGCAAACATAAATATTCACAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCCCTATAAAGAGATTTTTGTAAGAATGGCAAACATAAATATTCAC-AAA  899

seq1  TGTAAATTTATACATCACGAACTAATTAAATTTAAACTGCATAATATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTTATACATCACGAACTAATTAAATTTAAACTGCATAATATTAA  949

seq1  AATTGTGATTGGTATTGTCACTATATTTATATGTACTGCAATAGAAAATA  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  AATTGTGATTGGTATTGTCACTATATTTATATGTACTGC-ATAGAAAAT-  997

seq1  ATTTATTAAATTGTAAAGAGATCCTTCAGCATTGAATAGATGCATCTTAC  1050
      |||||||||| ||| ||||||||||||||||||||||||||||||| |||
seq2  ATTTATTAAA-TGT-AAGAGATCCTTCAGCATTGAATAGATGCATC-TAC  1044

seq1  TGGTTTATACTAGGAGAAAAAAGTTGAATCCGTGAATAGAGTTGTCAAAA  1100
      | | ||||   |||||||||||||||||||||||| ||||||||||  ||
seq2  T-GATTATCTAAGGAGAAAAAAGTTGAATCCGTGATTAGAGTTGTC--AA  1091

seq1  GCAAAACTTGCT-ATACA-TAACAGATGTTTTAGAAATAAATTGAGTTAT  1148
      || || |||||| ||||| |||  ||||  |||||||||||| |||||||
seq2  GC-AACCTTGCTAATACATTAAACGATG--TTAGAAATAAATGGAGTTAT  1138

seq1  AGCAATTCATGACACTA-TTGTCTCCTATGATGTAAAAACTTCCACATGA  1197
      ||  | ||||||| ||| |||||||  ||||||| ||| ||||  |||  
seq2  AGGCAATCATGACCCTATTTGTCTC--ATGATGT-AAACCTTC--CATTG  1183

seq1  AAGATTTGTACAGGTATTCTGACTTAATCTGTGCAATGCATG  1239
      ||||||   |||| | ||||||||||   |||||||||||||
seq2  AAGATT--GACAGAT-TTCTGACTTATCTTGTGCAATGCATG  1222


seq1: chr6_75529961_75530498
seq2: B6Ng01-221M09.g_69_606 (reverse)

seq1  AGACTGTAAGCCAACATAAACTTGCTCTTGTCTGTAATATGTTAACTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTAAGCCAACATAAACTTGCTCTTGTCTGTAATATGTTAACTACA  50

seq1  GCAACAGAAAAAATTACTAATGGATGTGTTTATATTTACATGGATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGAAAAAATTACTAATGGATGTGTTTATATTTACATGGATTTTAA  100

seq1  AAAAACAATCTAGCTTCTTATTAAACAAAATTTTGTTTATCTTTCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATCTAGCTTCTTATTAAACAAAATTTTGTTTATCTTTCTCCTT  150

seq1  TTATGGTTCACTTCTTTCCCATTAGGCATCTGTCTGGTTCCCACACAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGTTCACTTCTTTCCCATTAGGCATCTGTCTGGTTCCCACACAATA  200

seq1  ATCCCTCTTCAGATTGGATGAAGAATTGAAGACCCTGAAGGGGATAGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTTCAGATTGGATGAAGAATTGAAGACCCTGAAGGGGATAGGAG  250

seq1  CCTCATAGGAAAACCAACAAAATCAAGTAACCTGAACGCCTGAAAGCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATAGGAAAACCAACAAAATCAAGTAACCTGAACGCCTGAAAGCTCT  300

seq1  CAGAGACTGAGCCACTAACTAAATAGCATGCATAGAATGTACAGAGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTGAGCCACTAACTAAATAGCATGCATAGAATGTACAGAGGTGC  350

seq1  CTGACACATATGTAGTAGAAGTACAGCTCAGTATCCATGTGTATTCCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACACATATGTAGTAGAAGTACAGCTCAGTATCCATGTGTATTCCCCA  400

seq1  ACAAATGGAGCAGAGGCTATTCCCTAAAGCTGTAGACTGACTATGGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGAGCAGAGGCTATTCCCTAAAGCTGTAGACTGACTATGGTATC  450

seq1  CATTCCCCAAGAGAGATCCTTATTTGTCCTCAGTGGGAGAGAATGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCCCAAGAGAGATCCTTATTTGTCCTCAGTGGGAGAGAATGTGTCT  500

seq1  GCTAGGAGAAGAACAGACGGGGAATGGAAGAGGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAGAAGAACAGACGGGGAATGGAAGAGGAATTC  538


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