BAC Information

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BAC

Clone NameB6Ng01-222J16
Chromosome6 (Build37)
Map Location 144,557,586 - 144,679,806
singlet/doubletdoublet
Overlap gene4933425H06Rik, EG665149
Upstream geneSox5
Downstream geneBcat1, Lrmp, Casc1, Lyrm5, Kras, LOC100039495, LOC100042866, LOC546917, 1700073E17Rik, Ifltd1, LOC100042879, Tuba3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222J16.bB6Ng01-222J16.g
ACCGA037578GA037579
length965615
definitionB6Ng01-222J16.b B6Ng01-222J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,557,586 - 144,558,544)(144,679,198 - 144,679,806)
sequence
gaattcttgagacagagagtccttttatagtcccaagacagcctgtaatt
catgtagctgaggctagcttcaaatttgaaatcttcccacctccatccca
agagcattttatcatttctaacaagagacaaatgggtcttcatgataaga
gacagcagggtaccagggacatctctagagggaagaaatgactatctaaa
cacatcatcactgagagacgtggagacagggaatagagatgtacttcctg
tggcgtcgaggaggctgcaatttcgctcttcgggatagggctgcctcccc
ctgcccactttgagcacagacttcccaccgctgaaactactgtaccctca
aacactgaaacaaactaacaaaacagctgtctcctcccagacacagatgc
tgaagtctttgccatggtctcaagggagggctcattcccacctttctgct
ccaagcctgcagtacctgccttagtaagacacattgtgcaaatagtattt
gtgaaagtgtctgtgtcctcatcaaactgtagaatgcttaccttgttggg
gggcacataaaacaggacctaaaagtagctcagtaagagagcaaaagagc
cccacactctgtcttcctgcccatgtttcttaagtcaaaaaagcaacaaa
aggctattctttaaagtgataaatgtacctctgatgtttatctgactcat
aatttggaaaagcacatggtgagggaaggactcttattctgaggagaatc
caggcctcagtgcccccaacaaggctagagtaagccgacactggcatcgt
ctgctttgtcttttcttcagtggaggaagctgacacacgagcatctgaat
aggaatttctgggaacgccatgcttcctgttgtgtcatgacactgcctac
tcccacggtaaccaatcacaaaagtcattttgctcagagcctggggggtt
gggatggggttgggg

gaattccgacctgagtttacgtccctgtttcaccgaggagggttgtaaaa
acatagaattatggtttttaaattttaatttatttatttacttatttatt
ttggataggcctgtttggttgctattagataccatgctcggctaggttta
gatggctattaaatatctagagtaatcaataaggactggaattattgtca
caagtggtgaatccctgatgtcctcagagactgaggaggctctcctttcc
ctttgcctgctacaattactgtattggcttctctgcatctctcttgtgcc
aagttcccccctcacaccaagttcccccccacaccaagttcccctcacac
cgagtttcccccacaccgagttcccccaccccaagttccccccacaccga
gttccccccacaccgagtttcccccacagcaagttccccccacaccgagt
tccccacacactgagtccccacacacacaccaagttccccaacaccactc
tcatcaccattcttcttgcacgctctccttctaactcttgactctgtgcc
tattgccagttacaatcctcccacctactgggctgtgttttttttgtgtg
tgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_144557586_144558544
seq2: B6Ng01-222J16.b_47_1011

seq1  GAATTCTTGAGACAGAGAGTCCTTTTATAGTCCCAAGACAGCCTGTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAGACAGAGAGTCCTTTTATAGTCCCAAGACAGCCTGTAATT  50

seq1  CATGTAGCTGAGGCTAGCTTCAAATTTGAAATCTTCCCACCTCCATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCTGAGGCTAGCTTCAAATTTGAAATCTTCCCACCTCCATCCCA  100

seq1  AGAGCATTTTATCATTTCTAACAAGAGACAAATGGGTCTTCATGATAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATTTTATCATTTCTAACAAGAGACAAATGGGTCTTCATGATAAGA  150

seq1  GACAGCAGGGTACCAGGGACATCTCTAGAGGGAAGAAATGACTATCTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGGTACCAGGGACATCTCTAGAGGGAAGAAATGACTATCTAAA  200

seq1  CACATCATCACTGAGAGACGTGGAGACAGGGAATAGAGATGTACTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATCACTGAGAGACGTGGAGACAGGGAATAGAGATGTACTTCCTG  250

seq1  TGGCGTCGAGGAGGCTGCAATTTCGCTCTTCGGGATAGGGCTGCCTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCGAGGAGGCTGCAATTTCGCTCTTCGGGATAGGGCTGCCTCCCC  300

seq1  CTGCCCACTTTGAGCACAGACTTCCCACCGCTGAAACTACTGTACCCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACTTTGAGCACAGACTTCCCACCGCTGAAACTACTGTACCCTCA  350

seq1  AACACTGAAACAAACTAACAAAACAGCTGTCTCCTCCCAGACACAGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGAAACAAACTAACAAAACAGCTGTCTCCTCCCAGACACAGATGC  400

seq1  TGAAGTCTTTGCCATGGTCTCAAGGGAGGGCTCATTCCCACCTTTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTTGCCATGGTCTCAAGGGAGGGCTCATTCCCACCTTTCTGCT  450

seq1  CCAAGCCTGCAGTACCTGCCTTAGTAAGACACATTGTGCAAATAGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGCAGTACCTGCCTTAGTAAGACACATTGTGCAAATAGTATTT  500

seq1  GTGAAAGTGTCTGTGTCCTCATCAAACTGTAGAATGCTTACCTTGTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTGTCTGTGTCCTCATCAAACTGTAGAATGCTTACCTTGTTGGG  550

seq1  GGGCACATAAAACAGGACCTAAAAGTAGCTCAGTAAGAGAGCAAAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAAAACAGGACCTAAAAGTAGCTCAGTAAGAGAGCAAAAGAGC  600

seq1  CCCACACTCTGTCTTCCTGCCCATGTTTCTTAAGTCAAAAAAGCAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACTCTGTCTTCCTGCCCATGTTTCTTAAGTCAAAAAAGCAACAAA  650

seq1  AGGCTATTCTTTAAAGTGATAAATGTACCTCTGATGTTTATCTGACTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATTCTTTAAAGTGATAAATGTACCTCTGATGTTTATCTGACTCAT  700

seq1  AATTTGGAAAAGCACATGGTGAGGGAAGGACTCTTATTCTGAGGAGAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGAAAAGCACATGGTGAGGGAAGGACTCTTATTCTGAGGAGAATC  750

seq1  CAGGCCTCAGTGCCCCCAACAAGGCTAGAGTAAGCCGACACTGGCATCGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCAGTGCCCCCAACAAGGCTAGAGTAAGCCGACACTGGCATCGT  800

seq1  CTGCTTTGTCTTTTCTTCAGTGGAGGAAGCTGACACACGAGCATCTGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGTCTTTTCTTCAGTGGAGGAAGCTGACACACGAGCATCTGAAT  850

seq1  AGGAATTTCTGGGAACGCCATGCTTCCTG-TGTGTCATGACACTGCCTAC  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGAATTTCTGGGAACGCCATGCTTCCTGTTGTGTCATGACACTGCCTAC  900

seq1  TCCCACGGTAACCAATCAC-AAAGTCA-TTTGCTCAGAGCCTGGGGG--T  945
      ||||||||||||||||||| ||||||| |||||||||||||||||||  |
seq2  TCCCACGGTAACCAATCACAAAAGTCATTTTGCTCAGAGCCTGGGGGGTT  950

seq1  GGGATGGGGTGGGG-  959
      |||||||||| ||| 
seq2  GGGATGGGGTTGGGG  965


seq1: chr6_144679198_144679806
seq2: B6Ng01-222J16.g_67_681 (reverse)

seq1  ACACACACACACACACACAC-----ACACACAGCCCAGTAGGTGGGAGGA  45
      ||||||||||||||||||||     | |||||||||||||||||||||||
seq2  ACACACACACACACACACACAAAAAAAACACAGCCCAGTAGGTGGGAGGA  50

seq1  TTGTAACTGGCAATAGGCACAGAGTCAAGAGTTAGAAGGAGTGCGTGCAA  95
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTGTAACTGGCAATAGGCACAGAGTCAAGAGTTAGAAGGAGAGCGTGCAA  100

seq1  GAAG-ATGGTGATGAGAGTGGTGTTGGGGAACTTGGTGTGTGTGTGGGGA  144
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGTGATGAGAGTGGTGTTGGGGAACTTGGTGTGTGTGTGGGGA  150

seq1  CTCAGTGTGTGGGGAACTCGGTGTGGGGGGAACTTGCTGTGGGGGAAACT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTGTGGGGAACTCGGTGTGGGGGGAACTTGCTGTGGGGGAAACT  200

seq1  CGGTGTGGGGGGAACTCGGTGTGGGGGGAACTTGGGGTGGGGGAACTCGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGTGGGGGGAACTCGGTGTGGGGGGAACTTGGGGTGGGGGAACTCGG  250

seq1  TGTGGGGGAAACTCGGTGTGAGGGGAACTTGGTGTGGGGGGGAACTTGGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGGAAACTCGGTGTGAGGGGAACTTGGTGTGGGGGGGAACTTGGT  300

seq1  GTGAGGGGGGAACTTGGCACAAGAGAGATGCAGAGAAGCCAATACAGTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGGGGGAACTTGGCACAAGAGAGATGCAGAGAAGCCAATACAGTAA  350

seq1  TTGTAGCAGGCAAAGGGAAAGGAGAGCCTCCTCAGTCTCTGAGGACATCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCAGGCAAAGGGAAAGGAGAGCCTCCTCAGTCTCTGAGGACATCA  400

seq1  GGGATTCACCACTTGTGACAATAATTCCAGTCCTTATTGATTACTCTAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCACCACTTGTGACAATAATTCCAGTCCTTATTGATTACTCTAGA  450

seq1  TATTTAATAGCCATCTAAACCTAGCCGAGCATGGTATCTAATAGCAACCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATAGCCATCTAAACCTAGCCGAGCATGGTATCTAATAGCAACCA  500

seq1  AACAGGCCTATCCAAAATAAATAAGTAAATAAATAAATTAAAATTTAAAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCCTATCCAAAATAAATAAGTAAATAAATAAATTAAAATTTAAAA  550

seq1  ACCATAATTCTATGTTTTTACAACCCTCCTCGGTGAAACAGGGACGTAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAATTCTATGTTTTTACAACCCTCCTCGGTGAAACAGGGACGTAAA  600

seq1  CTCAGGTCGGAATTC  609
      |||||||||||||||
seq2  CTCAGGTCGGAATTC  615


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