BAC Information

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BAC

Clone NameB6Ng01-223I19
Chromosome6 (Build37)
Map Location 107,331,252 - 107,536,257
singlet/doubletdoublet
Overlap geneLrrn1
Upstream geneCntn4, Il5ra, Trnt1, Crbn, Ppia-ps6_1128.1
Downstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223I19.bB6Ng01-223I19.g
ACCGA038264GA038265
length1,1661,091
definitionB6Ng01-223I19.b B6Ng01-223I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,331,252 - 107,332,429)(107,535,165 - 107,536,257)
sequence
gaattcatgcttgccaagggacgcatggtacataagaaaaccctgggaga
tagagggagaattaattttgttcctgttttgtattaggtttgacgcctta
ctgcaacccagggatcctccttctttctcttgtcttaaagcactattctt
tgggttcaatgttaaagccatgaattgtctccaaggaccaaaagattcca
aataaaggctattattttaatgaagaaacagaaggaatctataaagaatt
cagctgattatcttaaacataacccaggaggctttcctgtgatctcagtt
ttctccctagcagtgttattttagggaaaaaaaaatcagcatgtgtgagg
ttagatttccagatggagtaaagagcgagaaaaaagaagatttaactcct
caagaggagattttcagttgtttgtctttaggactgctagtgtttatccc
tacattcatatgctttacttcgtcatctacacagggacgtgtatagagta
tattacacatttgcatgcaaatatggaatctcatggatcattttgaatct
ggaaatttgtttttattcattctggttttttgtttttttgttttgttttg
ttttacttctcaaggatcgtcagtatattcagaacttattttatatgcag
cagtcctgtggatgctaattaaaaacaatcagcctctgtattcttttgac
tttcttagaaaattaaacataattgggtttttcttgtgttttgaaacttc
acaccccttataaaggacacattcatcttgtattgatccttcctccatcc
cacattcctcagtgctttgtgcctaataggtgttcaataaatcttggttg
aaataaattcttcactctttcagagtgaaaagatggtatctttcagttca
ttgtctgcttgaggctctattatttcaaggcagcacaagacaagaaggtt
ttttgggttttttgtttttgtttgtttgtttgtttgtttgttgttgtttg
tttaactagtgtttctgactgcctctgactataagttctacttcagactt
cagtttcccttgttcaagagttattaactagttgatctatagctacccaa
ccagtagaaaagcctttctggaattaagccatgcataggatttggaacct
ttcaccaagccttgcc
gaattctctgaaaatgtgctgtagagaagtcagccaattttttcttacat
cagtacagttattgccaccttgtaactttattccatttagcaaactaaag
tcacgactcttaatcccttcttgaaaacttaattttcctctcccaaagct
actgtgattctagggagaggcaggaattagcgagtgtgaaagaaaaagaa
aaaaaaaaaaaaacaagataattaggaaaaaaaagtgacacagcttgttt
gttttataattcagtttgatatgaagcaaatcattatgtggggaaaaaac
agcaaaagattcaggcaagagtcgtcagtggatgctactctcagagcatt
ctccagtcaggtgactacagaagcaaaggatgactttatgcagagaaaca
agatagctacgcaaattacagggctgtgcaacagggcacgtttgttgtag
gagccttctgaaatgacctctgagagtgtggaccctgtgatgtaattcct
gccaaagtgctgcaggatctaatcatggaaaaagatctaacaaaacccaa
attccaaggcattccattaaaccaccagcttattctcttcacaaagtgtc
agtgctataaaatgcaaggaaggaaccacagccagtccagtgtaaaggag
agtaaaagaagaagcaaacaggcataaaaactaagtgaaacatatagtct
tggacttttcgttattatgtaaagaatattgctatgataatctgaaaaat
ctaaatagcagccattgattagataacatttgattcatattgtcttgatt
ttgtaaattctgttgtggtgatgtaagaatattctttgttttaggaaata
tccaggagtgtttaaaacaaagaaatactatgtccatacattatttttct
agagaagagatagacagacttttcaacagaaactatgtagaacctacata
aagtacctgagattattgagattggtctactgttcttaaaacttttgtgt
ttaattatgaaaagttgaaatgttacctagtgtaagtcggtttaaaacat
gttcctgtttactccatgaggctaacctgtcaataataaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107331252_107332429
seq2: B6Ng01-223I19.b_45_1210

seq1  GAATTCATGCTTGCCAAGGGACGCATGGTACATAAGAAAACCCTGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCTTGCCAAGGGACGCATGGTACATAAGAAAACCCTGGGAGA  50

seq1  TAGAGGGAGAATTAATTTTGTTCCTGTTTTGTATTAGGTTTGACGCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGGAGAATTAATTTTGTTCCTGTTTTGTATTAGGTTTGACGCCTTA  100

seq1  CTGCAACCCAGGGATCCTCCTTCTTTCTCTTGTCTTAAAGCACTATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACCCAGGGATCCTCCTTCTTTCTCTTGTCTTAAAGCACTATTCTT  150

seq1  TGGGTTCAATGTTAAAGCCATGAATTGTCTCCAAGGACCAAAAGATTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCAATGTTAAAGCCATGAATTGTCTCCAAGGACCAAAAGATTCCA  200

seq1  AATAAAGGCTATTATTTTAATGAAGAAACAGAAGGAATCTATAAAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGGCTATTATTTTAATGAAGAAACAGAAGGAATCTATAAAGAATT  250

seq1  CAGCTGATTATCTTAAACATAACCCAGGAGGCTTTCCTGTGATCTCAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATTATCTTAAACATAACCCAGGAGGCTTTCCTGTGATCTCAGTT  300

seq1  TTCTCCCTAGCAGTGTTATTTTAGGGAAAAAAAAATCAGCATGTGTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTAGCAGTGTTATTTTAGGGAAAAAAAAATCAGCATGTGTGAGG  350

seq1  TTAGATTTCCAGATGGAGTAAAGAGCGAGAAAAAAGAAGATTTAACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTCCAGATGGAGTAAAGAGCGAGAAAAAAGAAGATTTAACTCCT  400

seq1  CAAGAGGAGATTTTCAGTTGTTTGTCTTTAGGACTGCTAGTGTTTATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGAGATTTTCAGTTGTTTGTCTTTAGGACTGCTAGTGTTTATCCC  450

seq1  TACATTCATATGCTTTACTTCGTCATCTACACAGGGACGTGTATAGAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATATGCTTTACTTCGTCATCTACACAGGGACGTGTATAGAGTA  500

seq1  TATTACACATTTGCATGCAAATATGGAATCTCATGGATCATTTTGAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACATTTGCATGCAAATATGGAATCTCATGGATCATTTTGAATCT  550

seq1  GGAAATTTGTTTTTATTCATTCTGGTTTTTTGTTTTTTTGTTTTGTTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTTGTTTTTATTCATTCTGGTTTTTTGTTTTTTTGTTTTGTTTTG  600

seq1  TTTTACTTCTCAAGGATCGTCAGTATATTCAGAACTTATTTTATATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCTCAAGGATCGTCAGTATATTCAGAACTTATTTTATATGCAG  650

seq1  CAGTCCTGTGGATGCTAATTAAAAACAATCAGCCTCTGTATTCTTTTGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCTGTGGATGCTAATTAAAAACAATCAGCCTCTGTATTCTTTTGAC  700

seq1  TTTCTTAGAAAATTAAACATAATTGGGTTTTTCTTGTGTTTTGAAACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGAAAATTAAACATAATTGGGTTTTTCTTGTGTTTTGAAACTTC  750

seq1  ACACCCCTTATAAAGGACACATTCATCTTGTATTGATCCTTCCTCCATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTTATAAAGGACACATTCATCTTGTATTGATCCTTCCTCCATCC  800

seq1  CACATTCCTCAGTGCTTTGTGCCTAATAGGTGTTCAATAAATCTTGGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTCCTCAGTGCTTTGTGCCTAATAGGTGTTCAATAAATCTTGGTTG  850

seq1  AAATAAATTCTTCACTCTTTCAGAGTGAAAAGATGGTATCTTTCAGTTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATTCTTCACTCTTTCAGAGTGAAAAGATGGTATCTTTCAGTTCA  900

seq1  TTGTCTGCTTGAGGCTCTTATTATTTCAAGGCAGGCACAAAGAACAAGAA  950
      ||||||||||||||||| ||||||||||||||| ||||||   |||||||
seq2  TTGTCTGCTTGAGGCTC-TATTATTTCAAGGCA-GCACAA--GACAAGAA  946

seq1  GGTTTTTT-GGTTTTTTGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTT  999
      |||||||| |||||||||||||||||||||||||||||||||||||   |
seq2  GGTTTTTTGGGTTTTTTGTTTTTGTTTGTTTGTTTGTTTGTTTGTT--GT  994

seq1  TGTTTGTTTTTACTAGTGTTTCTGACTG-CTCTGACCTATAAGTTCTACT  1048
      |||||| ||| ||||||||||||||||| |||||| ||||||||||||||
seq2  TGTTTG-TTTAACTAGTGTTTCTGACTGCCTCTGA-CTATAAGTTCTACT  1042

seq1  TCAGAC-TCAGTTTCCCTGGTTTTCAAAAGAGTTATT-ACTAGGTGATCT  1096
      |||||| ||||||||||| |||     |||||||||| ||||| ||||| 
seq2  TCAGACTTCAGTTTCCCTTGTT----CAAGAGTTATTAACTAGTTGATC-  1087

seq1  TATAGCTACCCAACAAGTAGAAGAGCC-TTCTGG-ATTAAG-CATGCTAT  1143
      |||||||||||||| ||||||| |||| |||||| |||||| |||||   
seq2  TATAGCTACCCAACCAGTAGAAAAGCCTTTCTGGAATTAAGCCATGC--A  1135

seq1  TAGAATTTGGAAACACTTTCACCCCAAGCCTTGCC  1178
      ||| ||||||||   ||||||  ||||||||||||
seq2  TAGGATTTGGAA--CCTTTCA--CCAAGCCTTGCC  1166

seq1: chr6_107535165_107536257
seq2: B6Ng01-223I19.g_67_1157 (reverse)

seq1  TTTTA-TAATGACAGGGTAGCCTCATGGAGGTAAACAGGACAATGTTTTA  49
      ||||| || ||||||| |||||||||||| ||||||||||  ||||||||
seq2  TTTTATTATTGACAGGTTAGCCTCATGGA-GTAAACAGGAACATGTTTTA  49

seq1  AA-CGACTTACACTAGTTACATTTTCAACTTTTTCATAATTAAACACAAA  98
      || ||||||||||||| ||   ||||||| ||||||||||||||||||||
seq2  AACCGACTTACACTAGGTAACATTTCAAC-TTTTCATAATTAAACACAAA  98

seq1  AGGTTTTAAGAACAGTAGACCATTCTCAATAATTCTCAGGTACTTTATGT  148
      | |||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  A-GTTTTAAGAACAGTAGACCAATCTCAATAA-TCTCAGGTACTTTATGT  146

seq1  AGGTTCTACATAGGTTCTGTTGAAAAGTCTGTCTATCTCTTCTCTAGAAA  198
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTACATAGTTTCTGTTGAAAAGTCTGTCTATCTCTTCTCTAGAAA  196

seq1  AATAATGTATGGACATAGTATTTCTTTGTTTTTAAACACTCCTGGATATT  248
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATAATGTATGGACATAGTATTTCTTTG-TTTTAAACACTCCTGGATATT  245

seq1  TCCTAAAACAAAGAATATTCTTACATCACCACAACAGAATTTACAAAATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAACAAAGAATATTCTTACATCACCACAACAGAATTTACAAAATC  295

seq1  AAGACAATATGAATCAAATGTTATCTAATCAATGGCTGCTATTTAGATTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATATGAATCAAATGTTATCTAATCAATGGCTGCTATTTAGATTT  345

seq1  TTCAGATTATCATAGCAATATTCTTTACATAATAACGAAAAGTCCAAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTATCATAGCAATATTCTTTACATAATAACGAAAAGTCCAAGAC  395

seq1  TATATGTTTCACTTAGTTTTTATGCCTGTTTGCTTCTTCTTTTACTCTCC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTTCACTTAGTTTTTATGCCTGTTTGCTTCTTCTTTTACTCTCC  445

seq1  TTTACACTGGACTGGCTGTGGTTCCTTCCTTGCATTTTATAGCACTGACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACACTGGACTGGCTGTGGTTCCTTCCTTGCATTTTATAGCACTGACA  495

seq1  CTTTGTGAAGAGAATAAGCTGGTGGTTTAATGGAATGCCTTGGAATTTGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGAAGAGAATAAGCTGGTGGTTTAATGGAATGCCTTGGAATTTGG  545

seq1  GTTTTGTTAGATCTTTTTCCATGATTAGATCCTGCAGCACTTTGGCAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTAGATCTTTTTCCATGATTAGATCCTGCAGCACTTTGGCAGGA  595

seq1  ATTACATCACAGGGTCCACACTCTCAGAGGTCATTTCAGAAGGCTCCTAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATCACAGGGTCCACACTCTCAGAGGTCATTTCAGAAGGCTCCTAC  645

seq1  AACAAACGTGCCCTGTTGCACAGCCCTGTAATTTGCGTAGCTATCTTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACGTGCCCTGTTGCACAGCCCTGTAATTTGCGTAGCTATCTTGTT  695

seq1  TCTCTGCATAAAGTCATCCTTTGCTTCTGTAGTCACCTGACTGGAGAATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCATAAAGTCATCCTTTGCTTCTGTAGTCACCTGACTGGAGAATG  745

seq1  CTCTGAGAGTAGCATCCACTGACGACTCTTGCCTGAATCTTTTGCTGTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGAGTAGCATCCACTGACGACTCTTGCCTGAATCTTTTGCTGTTT  795

seq1  TTTCCCCACATAATGATTTGCTTCATATCAAACTGAATTATAAAACAAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCACATAATGATTTGCTTCATATCAAACTGAATTATAAAACAAAC  845

seq1  AAGCTGTGTCACTTTTTTTTCCTAATTATCTTG-TTTTTTTTTTTTTTCT  897
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGCTGTGTCACTTTTTTTTCCTAATTATCTTGTTTTTTTTTTTTTTTCT  895

seq1  TTTTCTTTCACACTCGCTAATTCCTGCCTCTCCCTAGAATCACAGTAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCACACTCGCTAATTCCTGCCTCTCCCTAGAATCACAGTAGCT  945

seq1  TTGGGAGAGGAAAATTAAGTTTTCAAGAAGGGATTAAGAGTCGTGACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAGGAAAATTAAGTTTTCAAGAAGGGATTAAGAGTCGTGACTTT  995

seq1  AGTTTGCTAAATGGAATAAAGTTACAAGGTGGCAATAACTGTACTGATGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGCTAAATGGAATAAAGTTACAAGGTGGCAATAACTGTACTGATGT  1045

seq1  AAGAAAAAATTGGCTGACTTCTCTACAGCACATTTTCAGAGAATTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAATTGGCTGACTTCTCTACAGCACATTTTCAGAGAATTC  1091