BAC Information

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BAC

Clone NameB6Ng01-224A19
Chromosome6 (Build37)
Map Location 116,671,311 - 116,672,449
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem40, EG620848, Cand2, Rpl32, BC060267, Mbd4, Ift122, Rho, H1foo, Plxnd1, Tmcc1, LOC100043425, EG666634, EG666648, D6Wsu116e, Anubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik
Downstream geneLOC100043439, Cxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224A19.bB6Ng01-224A19.g
ACCGA038625GA038626
length1,2491,141
definitionB6Ng01-224A19.b B6Ng01-224A19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctccgtttttctt
ggaggcactcatagctatgagttccctcttagaaatgctttcattgtgtc
ccaaggtttgggtacgttggtgcttcattttcattaaactctaaaagtct
ttaatttctttctttaatccttccttgaacaagtatcattgagaagagtg
gtgtccagtttcaatggtgatgtggctttcgtatttatttttgattggaa
gatcagcctagcagtgggggatctgataagatacttgtcagttccaatct
ggatccgttgagagctcgatttgtgtaacccttctgtgttgtgggctca
gaattctgataccgtgatgtaggagtgggggacgctagaggagaggccac
acagccataaaccagtgggcagagaggagagtctaaactggataacgggt
gcaacaggaattagaagagtctattgaaggaaagatgtaaccaaaagaac
ttgaacaagagcaggaagccatgtctaaggctgagagcccttatggttga
agtgggcgagggatgaagaggtggcctaggcagttacaaagacctgggat
tataggcaaagacattcacactttattctgtaggaaatggggactcttgg
aaagagttaaggtcgggggtaacttatgaatatctaccattccccaacat
aacctgaggtagcaggtgctatcaaggagcatcaccagaggctaaagacc
cttgggagacaggagcaacaaactgcaagaaataggacgggacgatgggc
gctgcagacaggagaaggtggccggcaagggattaatacagaagtgacag
caccagggaaggcagaaagctgtggtcctctcttgagtttccagccttct
gactggagtagtaataagactggcatctaggatataacagaaagaaaata
ggaagggactgagaggaacagaagagtttgcttgggacatactgactttc
acacaggagtaaccaaaagtcaggagaaattttaaagctgtaagaagaga
gaggtgaaatctgaggctttggcttggaattatcttcatatttgtaatgt
tcaagctgtggaaaaggaaaaccaccatggtggagaagacagaagggggg
attatcgggtgtgttagttggcagttgctgtgtagcagatcaccctaacg
cctagaaattagaacaataaacatttactatctcacaattctgtggattg
ggtatgttggagaagccgggagcctggctggcccatgctcacagcctctg
gagaggtggctgttggcaggggttgtattcatctgagatttatcaaggtt
caacatttgaaactcatttggcagccgctgtggacaagaagcttcagatt
tcacctgaatcactacttcttggttcttctggaaaggaatagcccctcct
tctgcttctagggcagtgattgtcacctgtggactgtgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_116671311_116672449
seq2: B6Ng01-224A19.g_57_1197 (reverse)

seq1  GGTCACAGCCCACAGGTTGACAATCACTGCCCTAGAGGCAGAAGGAGGGG  50
      |||||||| ||||||| ||||||||||||||||||| |||||||||||||
seq2  GGTCACAGTCCACAGG-TGACAATCACTGCCCTAGAAGCAGAAGGAGGGG  49

seq1  CTA-TCCTCT-CAGAAGGAAACCAGAAGTAGTGATCAGGGTGAAAATCTG  98
      ||| |||| | ||||| ||| | ||||||||||||   |||| |||||||
seq2  CTATTCCTTTCCAGAA-GAACCAAGAAGTAGTGATTCAGGTG-AAATCTG  97

seq1  AAGCCTCTTGTCCACAGCGGCTGCCCAAATGAG-TTCAAATG-TGACCCT  146
      |||| |||||||||||||||||| ||||||||| |||||||| ||| |||
seq2  AAGCTTCTTGTCCACAGCGGCTG-CCAAATGAGTTTCAAATGTTGAACCT  146

seq1  TGATAAATCTCAGATGAATACAACCCCTGCCAACAGCCACCTCTCCAGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAATCTCAGATGAATACAACCCCTGCCAACAGCCACCTCTCCAGAG  196

seq1  GCTGTGAGCATGGGCCAGCCAGGCTCCCGGC-TCTCCAACATACCCAATC  245
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCTGTGAGCATGGGCCAGCCAGGCTCCCGGCTTCTCCAACATACCCAATC  246

seq1  CACAGAAATTGTGAGATAGTAAATGTTTATTGTTCTAATTTCTAGGCGTT  295
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAG-AATTGTGAGATAGTAAATGTTTATTGTTCTAATTTCTAGGCGTT  295

seq1  AGGGTGATCTGCTACACAGCAACTGCCAACTAACACACCCGATAATCCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGATCTGCTACACAGCAACTGCCAACTAACACACCCGATAATCCCC  345

seq1  CCTTCTGTCTTCTCCACCATGGTGGTTTTCCTTTTCCACAGCTTGAACAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCTTCTCCACCATGGTGGTTTTCCTTTTCCACAGCTTGAACAT  395

seq1  TACAAATATGAAGATAATTCCAAGCCAAAGCCTCAGATTTCACCTCTCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATATGAAGATAATTCCAAGCCAAAGCCTCAGATTTCACCTCTCTC  445

seq1  TTCTTACAGCTTTAAAATTTCTCCTGACTTTTGGTTACTCCTGTGTGAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACAGCTTTAAAATTTCTCCTGACTTTTGGTTACTCCTGTGTGAAA  495

seq1  GTCAGTATGTCCCAAGCAAACTCTTCTGTTCCTCTCAGTCCCTTCCTATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTATGTCCCAAGCAAACTCTTCTGTTCCTCTCAGTCCCTTCCTATT  545

seq1  TTCTTTCTGTTATATCCTAGATGCCAGTCTTATTACTACTCCAGTCAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGTTATATCCTAGATGCCAGTCTTATTACTACTCCAGTCAGAA  595

seq1  GGCTGGAAACTCAAGAGAGGACCACAGCTTTCTGCCTTCCCTGGTGCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAAACTCAAGAGAGGACCACAGCTTTCTGCCTTCCCTGGTGCTGT  645

seq1  CACTTCTGTATTAATCCCTTGCCGGCCACCTTCTCCTGTCTGCAGCGCCC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTGTATTAATCCCTTGCCGGCCACCTTCTCCTGTCTGCAGCGCCC  695

seq1  ATCGTCCCGTCCTATTTCTTGCAGTTTGTTGCTCCTGTCTCCCAAGGGTC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTCCCGTCCTATTTCTTGCAGTTTGTTGCTCCTGTCTCCCAAGGGTC  745

seq1  TTTAGCCTCTGGTGATGCTCCTTGATAGCACCTGCTACCTCAGGTTATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCTCTGGTGATGCTCCTTGATAGCACCTGCTACCTCAGGTTATGT  795

seq1  TGGGGAATGGTAGATATTCATAAGTTACCCCCGACCTTAACTCTTTCCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAATGGTAGATATTCATAAGTTACCCCCGACCTTAACTCTTTCCAA  845

seq1  GAGTCCCCATTTCCTACAGAATAAAGTGTGAATGTCTTTGCCTATAATCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCCATTTCCTACAGAATAAAGTGTGAATGTCTTTGCCTATAATCC  895

seq1  CAGGTCTTTGTAACTGCCTAGGCCACCTCTTCATCCCTCGCCCACTTCAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTTGTAACTGCCTAGGCCACCTCTTCATCCCTCGCCCACTTCAA  945

seq1  CCATAAGGGCTCTCAGCCTTAGACATGGCTTCCTGCTCTTGTTCAAGTTC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGGGCTCTCAGCCTTAGACATGGCTTCCTGCTCTTGTTCAAGTTC  995

seq1  TTTTGGTTACATCTTTCCTTCAATAGACTCTTCTAATTCCTGTTGCACCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTACATCTTTCCTTCAATAGACTCTTCTAATTCCTGTTGCACCC  1045

seq1  GTTATCCAGTTTAGACTCTCCTCTCTGCCCACTGGTTTATGGCTGTGTGG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCAGTTTAGACTCTCCTCTCTGCCCACTGGTTTATGGCTGTGTGG  1095

seq1  CCTCTCCTCTAGCGTCCCCCACTCCT--CTCACGGTATCAGAATTC  1139
      ||||||||||||||||||||||||||   |||||||||||||||||
seq2  CCTCTCCTCTAGCGTCCCCCACTCCTACATCACGGTATCAGAATTC  1141