BAC Information

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BAC

Clone NameB6Ng01-224L22
Chromosome6 (Build37)
Map Location 68,976,929 - 68,978,035
singlet/doubletsinglet
Overlap geneIgk
Upstream geneEG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80
Downstream geneGm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61, EG667683, Igkv4-60, Gm1077, Igkv13-57-2, Gm1418, Igkv13-57-1, Gm189, Igkv13-56-1, Igkv4-56, Igkv13-55-1, Gm1524, Igkv13-54-1, Igkv4-54, Gm1420, Igkv4-51, Gm1069, Igkv12-49, Igkv5-48, ENSMUSG00000029975, Igkv12-46, Igkv5-45, Igkv12-44, Igkv5-43, Igkv12-42, Igkv12-41, Igkv5-40-1, Igkv12-40, Gm1409, Igkv12-38, Gm1410, Igkv18-36, Igkv1-35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224L22.bB6Ng01-224L22.g
ACCGA039117GA039118
length1,1151,194
definitionB6Ng01-224L22.b B6Ng01-224L22.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtattctgttagcagctttcaaatgaagaagtagaaccttcag
ttcctcccaaaccatgcctgcctggatgctgcagtgttactgccttgatg
ataatagactgaacatcagaacctgcaagccaggcccaaataaatgttgt
ccttataagacctgccttggtcatgatgtctgttcagagaagtaaaaccg
taaggtagactgtgtctcctagaaacaccagagaagctgcattcaggtgg
tctaatggctgatgaataaacaagacatgaacaaggatgactcctgaata
catgtaaacattgaaatggtaattcttcacggtattccaccctaaataaa
gaattatggtgtaactgtaaattctgagagtaggcaaaataacactgtta
actagaatagaacccctgaatgatcagtaaaacaggactgtattcaaact
ctgtgttttcgacttttttacctcaaaggacattagtaataaggaaagtg
attttctgagttccttctgatggaaggttcctgaggatcctacagcttct
caggctgctatgatgtacctgatataatctgtcttcctattaaaatgatc
tgaatatggagacatcaaaataatacaggctattgcaactgatcttagat
tctcaataaaacttgatagtaggactgtattgatgaatagaagacacatt
ttggacacagaacatgacagaatcaagttactatggacaaagtaactgct
aataagagactaaagctggataaatcaaccattctatggtgtgacaacat
tttataatacatgaatactctctggtaattgaaaaattatgtaatcatac
aaatgtccagtcatttggtttctctattacttgtctactttggttactga
aacttgttttttcaattaaccagaagccaatggagaaaataacatgacta
gtcagaatgatgacacactcagaccctgagtgctttagtttaatatggaa
catctagctatattctctattctcaaaccaccctggaggagtaacagaag
accaaagttcgtcgctgagaatgaaaggtatgaccatgtagagacctgtc
aataccagggatcca
gaattctaggaatggaaataggaaagagcctgaggaaaagaagttccagc
atcaagaacaacggaacaaacacggtatgtacatataagtggatattagc
ccaaaagcatggaatacccaaaatatgatttacagacaacatgaagtcca
agaagaaggaaggaaaaagaaagtatgggtgcttcagtccttcttagaag
ggggaacaaaatacaggagaaaatacagaatcaaagtgtggagcagagac
tgaaggaaaggccatccaaagactgtcccacctggggatccatcccatta
tacagacaccaaacctagacattactgtggatgccaggaagtgcatactg
acaggagcctgatataactacaactgagaggttctgccagagcctgacat
atacagaggtagatgctcacagctcattggactgagcaccacttcccaat
ataggagttagagataggactgaaggaggttaagggtttttcagtaccat
aggaagaaaaaaagtgtcaatgaatcagagttcccaaggtgtaaaccacc
aaccaaggagtgcagggtcattggtcctctgagccggcagtgacacgaac
aacacagacaccaaatcaggttcacagagcaacatctttactttgggctt
tttcttttacagctctcttccccagcaacttcttttagggcaagggttaa
actactcttattctactactactggcttctacctagagcaagggctaacc
aaactctctttactactactggcttcttttacaacagctaacttctacca
cttacaacagcagcttctattactccatccttctcccagcaagggctaaa
ctcttctctctactcacactgactcacctccttctatctccaaccacctc
atccaatcagatttcacacacactccaggctcgaacttaggtcattccac
agataggctgacaggtctggatcaagaaggaactgaccagcctggaagca
gcccaacacatgcagcctcactgcaacatgctcagcaagcagtaaacaag
tgggtttcatgggggcctgcagcctcactgcctctgcatctcccttttag
gttaatagaaagctctgggaaatcagcactgtctaagttgccccaatcaa
tgcccacaaatcctttacaccgctctctgaaagtatgacacagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_68976929_68978035
seq2: B6Ng01-224L22.b_47_1161

seq1  GAATTCAGTATTCTGTTAGCAGCTTTCAAATGAAGAAGTAGAACCTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTATTCTGTTAGCAGCTTTCAAATGAAGAAGTAGAACCTTCAG  50

seq1  TTCCTCCCAAACCATGCCTGCCTGGATGCTGCAGTGTTACTGCCTTGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCCAAACCATGCCTGCCTGGATGCTGCAGTGTTACTGCCTTGATG  100

seq1  ATAATAGACTGAACATCAGAACCTGCAAGCCAGGCCCAAATAAATGTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGACTGAACATCAGAACCTGCAAGCCAGGCCCAAATAAATGTTGT  150

seq1  CCTTATAAGACCTGCCTTGGTCATGATGTCTGTTCAGAGAAGTAAAACCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAAGACCTGCCTTGGTCATGATGTCTGTTCAGAGAAGTAAAACCG  200

seq1  TAAGGTAGACTGTGTCTCCTAGAAACACCAGAGAAGCTGCATTCAGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTAGACTGTGTCTCCTAGAAACACCAGAGAAGCTGCATTCAGGTGG  250

seq1  TCTAATGGCTGATGAATAAACAAGACATGAACAAGGATGACTCCTGAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGCTGATGAATAAACAAGACATGAACAAGGATGACTCCTGAATA  300

seq1  CATGTAAACATTGAAATGGTAATTCTTCACGGTATTCCACCCTAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAACATTGAAATGGTAATTCTTCACGGTATTCCACCCTAAATAAA  350

seq1  GAATTATGGTGTAACTGTAAATTCTGAGAGTAGGCAAAATAACACTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATGGTGTAACTGTAAATTCTGAGAGTAGGCAAAATAACACTGTTA  400

seq1  ACTAGAATAGAACCCCTGAATGATCAGTAAAACAGGACTGTATTCAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAATAGAACCCCTGAATGATCAGTAAAACAGGACTGTATTCAAACT  450

seq1  CTGTGTTTTCGACTTTTTTACCTCAAAGGACATTAGTAATAAGGAAAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTCGACTTTTTTACCTCAAAGGACATTAGTAATAAGGAAAGTG  500

seq1  ATTTTCTGAGTTCCTTCTGATGGAAGGTTCCTGAGGATCCTACAGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGAGTTCCTTCTGATGGAAGGTTCCTGAGGATCCTACAGCTTCT  550

seq1  CAGGCTGCTATGATGTACCTGATATAATCTGTCTTCCTATTAAAATGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGCTATGATGTACCTGATATAATCTGTCTTCCTATTAAAATGATC  600

seq1  TGAATATGGAGACATCAAAATAATACAGGCTATTGCAACTGATCTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGGAGACATCAAAATAATACAGGCTATTGCAACTGATCTTAGAT  650

seq1  TCTCAATAAAACTTGATAGTAGGACTGTATTGATGAATAGAAGACACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATAAAACTTGATAGTAGGACTGTATTGATGAATAGAAGACACATT  700

seq1  TTGGACACAGAACATGACAGAATCAAGTTACTATGGACAAAGTAACTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACAGAACATGACAGAATCAAGTTACTATGGACAAAGTAACTGCT  750

seq1  AATAAGAGACTAAAGCTGGATAAATCAACCATTCTATGGTGTGACAACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAGACTAAAGCTGGATAAATCAACCATTCTATGGTGTGACAACAT  800

seq1  TTTATAATACATGAATACTCTCTGGTAATTGAAAAATTATGTAATCATAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATACATGAATACTCTCTGGTAATTGAAAAATTATGTAATCATAC  850

seq1  AAATGTCCAGTCATTTGGTTTCTCTATTACTTGTCTACTTTGGTTACTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCCAGTCATTTGGTTTCTCTATTACTTGTCTACTTTGGTTACTGA  900

seq1  AACTTG-TTTTTCAATTAACCAGAAGCCAATGGAGAAA--TACATGACTA  947
      |||||| |||||||||||||||||||||||||||||||   |||||||||
seq2  AACTTGTTTTTTCAATTAACCAGAAGCCAATGGAGAAAATAACATGACTA  950

seq1  GTCAGAATGATGACACACTCAGA-CCTGAGTGCTTTAG-TTAATATGGAA  995
      ||||||||||||||||||||||| |||||||||||||| |||||||||||
seq2  GTCAGAATGATGACACACTCAGACCCTGAGTGCTTTAGTTTAATATGGAA  1000

seq1  CATCTAGCTTATA-TCTCTA-TCTCAAAACACCCTTGGAAGGAGTTACAG  1043
      |||||||| |||| |||||| ||||||| ||||||  | |||||| ||||
seq2  CATCTAGC-TATATTCTCTATTCTCAAACCACCCT--GGAGGAGTAACAG  1047

seq1  -AGA-CAAAGTTTGGCGCTGAG-ATGAAAGGATGGACCATGTAGAGA-CT  1089
       ||| ||||||| | ||||||| ||||||||   ||||||||||||| ||
seq2  AAGACCAAAGTTCGTCGCTGAGAATGAAAGGTATGACCATGTAGAGACCT  1097

seq1  GCCATACCCAGGGATCCA  1107
      | ||   |||||||||||
seq2  GTCAATACCAGGGATCCA  1115