BAC Information

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BAC

Clone NameB6Ng01-227B10
Chromosome6 (Build37)
Map Location 44,618,552 - 44,619,694
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227B10.bB6Ng01-227B10.g
ACCGA040849GA040850
length1,136182
definitionB6Ng01-227B10.b B6Ng01-227B10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctaactttgttgtgaagcttcttttaactttattgtctaagtag
gttaatcagtatgaattaatgagcacaaattaatcaattagtaccaatta
atgtgtacatatctgaggttgttttcaatcggccaattattgactgaata
taacaagtcctacttatttgttaagaatttatttcctgtgttaaaatatt
ttcaatacctatttttctttgctctattaattacattattgttttagtaa
agatcactaccaggtatgaatttattttaatattcagcttacttcttttt
tttacttattaaatttgtcaatatgatgggtagtgttaactatcagtttg
acaagatctaaaatgtacctagaaatcctgggcatgtttatgggcaatta
tctagattatattccttcatatagagaaaatctatctcagtttgggacag
ggtcgttccctggccaggaacctgaattaagaattagacatgatgaatta
agaatgaagattgaatagaggctttcactatgtttttatttattgattgt
ggatatgctgtgacaagatatatcaagttcctgatgccctgactgactac
ctgcctcaacaaggactgtaccttgaacagtgagataaaataaacactcc
tcactgtctttggaggggggaataagggcattttatcacagcaatgggaa
agaaatggaagcagtcagagaccatcataattttccaaattattagaatg
ttcaattagaaataaaacagacattcttttacaattacatgtgtatcatg
tagagacaaccaattgaaggcaaataatcaactatgcactcacagtgatg
taattgctgcgcatggtagttattcaagaactgaattttacttttcttaa
aatgtaaaatttactaaaattgctataggacattaaaatattgaatgata
tttttaaaatacctaaagaatttatattgaatttacataatcagagacat
tgggactcatcacctcatccacatgactgtactgtcttcaatgtcatgtt
tctggagtttgataatgcatagaagcaaatattagcttgcatgcaactct
atcttgtatcataagaataagagacattacctgctt

tttgtttagctctgtactccatctttaataggattatttggttctctgga
gtctaacatgggactcaaggctccagctgcatatgtaggtgaggatggcc
tagttgttcatcaatgggaggaaaggcccttggtcctgtgaaggctctat
gacccaatataggggaattccagggccaggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44618552_44619694
seq2: B6Ng01-227B10.b_44_1179

seq1  GAATTCCTAACTTTGTTGTGAAGCTTCTTTTAACTTTATTGTCTAAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACTTTGTTGTGAAGCTTCTTTTAACTTTATTGTCTAAGTAG  50

seq1  GTTAATCAGTATGAATTAATGAGCACAAATTAATCAATTAGTACCAATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATCAGTATGAATTAATGAGCACAAATTAATCAATTAGTACCAATTA  100

seq1  ATGTGTACATATCTGAGGTTGTTTTCAATCGGCCAATTATTGACTGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTACATATCTGAGGTTGTTTTCAATCGGCCAATTATTGACTGAATA  150

seq1  TAACAAGTCCTACTTATTTGTTAAGAATTTATTTCCTGTGTTAAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGTCCTACTTATTTGTTAAGAATTTATTTCCTGTGTTAAAATATT  200

seq1  TTCAATACCTATTTTTCTTTGCTCTATTAATTACATTATTGTTTTAGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATACCTATTTTTCTTTGCTCTATTAATTACATTATTGTTTTAGTAA  250

seq1  AGATCACTACCAGGTATGAATTTATTTTAATATTCAGCTTACTTCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTACCAGGTATGAATTTATTTTAATATTCAGCTTACTTCTTTTT  300

seq1  TTTACTTATTAAATTTGTCAATATGATGGGTAGTGTTAACTATCAGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTATTAAATTTGTCAATATGATGGGTAGTGTTAACTATCAGTTTG  350

seq1  ACAAGATCTAAAATGTACCTAGAAATCCTGGGCATGTTTATGGGCAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATCTAAAATGTACCTAGAAATCCTGGGCATGTTTATGGGCAATTA  400

seq1  TCTAGATTATATTCCTTCATATAGAGAAAATCTATCTCAGTTTGGGACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTATATTCCTTCATATAGAGAAAATCTATCTCAGTTTGGGACAG  450

seq1  GGTCGTTCCCTGGCCAGGAACCTGAATTAAGAATTAGACATGATGAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTTCCCTGGCCAGGAACCTGAATTAAGAATTAGACATGATGAATTA  500

seq1  AGAATGAAGATTGAATAGAGGCTTTCACTATGTTTTTATTTATTGATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAGATTGAATAGAGGCTTTCACTATGTTTTTATTTATTGATTGT  550

seq1  GGATATGCTGTGACAAGATATATCAAGTTCCTGATGCCCTGACTGACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATGCTGTGACAAGATATATCAAGTTCCTGATGCCCTGACTGACTAC  600

seq1  CTGCCTCAACAAGGACTGTACCTTGAACAGTGAGATAAAATAAACACTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCAACAAGGACTGTACCTTGAACAGTGAGATAAAATAAACACTCC  650

seq1  TCACTGTCTTTGGAGGGGGGAATAAGGGCATTTTATCACAGCAATGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTCTTTGGAGGGGGGAATAAGGGCATTTTATCACAGCAATGGGAA  700

seq1  AGAAATGGAAGCAGTCAGAGACCATCATAATTTTCCAAATTATTAGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAAGCAGTCAGAGACCATCATAATTTTCCAAATTATTAGAATG  750

seq1  TTCAATTAGAAATAAAACAGACATTCTTTTACAATTACATGTGTATCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAGAAATAAAACAGACATTCTTTTACAATTACATGTGTATCATG  800

seq1  TAGAGACAACCAATTGAAGGCAAATAATCAACTATGCACTCACAGTGATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAACCAATTGAAGGCAAATAATCAACTATGCACTCACAGTGATG  850

seq1  TAATTGCTGCGCATGGTAGTTATTCAAGAACTGAATTTTACTTTTCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGCTGCGCATGGTAGTTATTCAAGAACTGAATTTTACTTTTCTTAA  900

seq1  AATGTAAAATTTACTAAAATTGCTATAGGACATTAAAATATTGAATGATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAAATTTACTAAAATTGCTATAGGACATTAAAATATTGAATGATA  950

seq1  TTTTTAAAATACCTAAAGAATTTATATTGAATTTACATAATCAGAGAACA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTTTAAAATACCTAAAGAATTTATATTGAATTTACATAATCAGAG-ACA  999

seq1  TT-GGACTCATCACTCCAT-CACATGACTGTTAACTGTCTTCAATGTCAT  1048
      || |||||||||||  ||| |||||||||||  |||||||||||||||||
seq2  TTGGGACTCATCACCTCATCCACATGACTGT--ACTGTCTTCAATGTCAT  1047

seq1  GTTTCTGGAGTTTGATAATGCATTAGGAAGCAAAATAATAAGCTTTGCAT  1098
      |||||||||||||||||||||||   ||||||||   || ||| ||||||
seq2  GTTTCTGGAGTTTGATAATGCAT--AGAAGCAAA--TATTAGC-TTGCAT  1092

seq1  GCAAACTCTATTCTGTATCATTATAGATAAGAGACATTA-CTGCTT  1143
      || ||||||||  |||||||| | | ||||||||||||| ||||||
seq2  GC-AACTCTATCTTGTATCATAAGA-ATAAGAGACATTACCTGCTT  1136


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