BAC Information

Click to search

BAC

Clone NameB6Ng01-227K01
Chromosome6 (Build37)
Map Location 107,944,465 - 108,044,392
singlet/doubletdoublet
Overlap geneSetmar
Upstream genePpia-ps6_1128.1, Lrrn1
Downstream geneSumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2, Arl8b, Edem1, EG627371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K01.bB6Ng01-227K01.g
ACCGA041251GA041252
length6891,172
definitionB6Ng01-227K01.b B6Ng01-227K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,944,465 - 107,945,152)(108,043,331 - 108,044,392)
sequence
tcagaaagcagagatggatgttagagcacatccacattaggagaagtttg
agtgcttgtgagaatacttcaagaaagcaagacaagagttttatgacctc
agtttctggaaaacacagatttgttcttggaatatgttttcatgctcctt
ccaggtatagcaagtaggagtgagtttacttcatgttactcattattgct
tgctgtacttattcaattaaatgcctagacaattctttacatgcctctat
gcaagaatgtatttttgctacatgcggcttgtcattgtcattgtatacag
cttgaactcatgagaactttactcatgtgaccattcttaaccctcagaga
ataaattatctgggtctctaaataaagttggctatttggggcctagcaaa
cacagaagtgcatgctcacagtcacctattggatggatcacagggccccc
aatggaggagctagagaaagtacccaaggagctaaagggatctgcaaccc
tataggtggaacaaagatatgaactaaccagtagcccctggagttcgtgt
ctctagctgcatatgtatcagaagatggcctagttggccatcagtgaaaa
gagaggcccattggtcgtgcaaactttatatgcctcagtacatggggaac
accagggccaagaagtgggagtgggtggatggggggggg

gaattcttactctgtgtccccagagcaacattctttacgggctgaaactg
gggctggagtatttcaaatgactttcttcgtagatagaaaagaacaaagt
aaaagtaacgtttgtgtgcccagcaaacccgagattcagactttagattc
acctgtccccagcccctcagcctccaatgctgcgattatgagtatgtctc
attacagctggagttttatgtgggttatggagacagaacacaggttcatt
cccacattactgaacttatacttacagggaatctcctcggatgagctagc
tccctagtccccagactctgagaaaaatttaaagatattttaaaatcgga
tactgtactattatgtggtgaaaagaacacatttttatctgtttggaata
ttaaaaagggaaagcagtatgtatatataaatacacacactgtatttata
tataagttcatagcagaaatggaaaaaaaaaagcctaacctgtataaata
aaagctagggttctagctcccctttaaaataccagaactcgccctgatct
ccccaggtctcatcatcccaggtcccgctatttcctgtggggagacatgc
ttgcccaagtccctgtttgatcatgtttttctttttgtctcctctcctat
ttgtctccttttaaaatgctgttctagtggccaggacttgggtttgacga
gaacaaatttggcagatgtgcttttctggcaacaatgccagcctgtgtga
tgttctttgtcacttttttttttcctttttttgggtacagccagttcaga
acaagatgtgctcttgtgaaactttaagtcagttttgatggttaaatatt
caaagaggcagtgtctgaatatgaaagctaccgtgcagacatctttcact
aggagtacagggttggggttaaaaatcagtgtttgtgggaagaagtagaa
acctcaggtcatttttatttttactgtgtgtggagggtaatgtgtgccac
gtgtgtgtaggcatattgcatgcttcaggtttggtagtagtgtataccac
attgtgtaggcaccatctggcatgctcaggctttgggttaggtagttgta
atcaccatgtgtaagcacatcctgcatgccctcagtttgcttagaagtgt
atacacatgtcgtaaggcacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_107944465_107945152
seq2: B6Ng01-227K01.b_54_741

seq1  TCAGAAAGCAGAGATGGATGTTAGAGCACATCCACATTAGGAGAAGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGCAGAGATGGATGTTAGAGCACATCCACATTAGGAGAAGTTTG  50

seq1  AGTGCTTGTGAGAATACTTCAAGAAAGCAAGACAAGAGTTTTATGACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTGTGAGAATACTTCAAGAAAGCAAGACAAGAGTTTTATGACCTC  100

seq1  AGTTTCTGGAAAACACAGATTTGTTCTTGGAATATGTTTTCATGCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGAAAACACAGATTTGTTCTTGGAATATGTTTTCATGCTCCTT  150

seq1  CCAGGTATAGCAAGTAGGAGTGAGTTTACTTCATGTTACTCATTATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTATAGCAAGTAGGAGTGAGTTTACTTCATGTTACTCATTATTGCT  200

seq1  TGCTGTACTTATTCAATTAAATGCCTAGACAATTCTTTACATGCCTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTACTTATTCAATTAAATGCCTAGACAATTCTTTACATGCCTCTAT  250

seq1  GCAAGAATGTATTTTTGCTACATGCGGCTTGTCATTGTCATTGTATACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGAATGTATTTTTGCTACATGCGGCTTGTCATTGTCATTGTATACAG  300

seq1  CTTGAACTCATGAGAACTTTACTCATGTGACCATTCTTAACCCTCAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTCATGAGAACTTTACTCATGTGACCATTCTTAACCCTCAGAGA  350

seq1  ATAAATTATCTGGGTCTCTAAATAAAGTTGGCTATTTGGGGCCTAGCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTATCTGGGTCTCTAAATAAAGTTGGCTATTTGGGGCCTAGCAAA  400

seq1  CACAGAAGTGCATGCTCACAGTCACCTATTGGATGGATCACAGGGCCCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAGTGCATGCTCACAGTCACCTATTGGATGGATCACAGGGCCCCC  450

seq1  AATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATCTGCAACCC  500

seq1  TATAGGTGGAACAAAGATATGAACTAACCAGTAGCCCCTGGAGTTCGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTGGAACAAAGATATGAACTAACCAGTAGCCCCTGGAGTTCGTGT  550

seq1  CTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCAGTGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCAGTGAAAA  600

seq1  GAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACATGGGGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCCATTGGTCGTGCAAACTTTATATGCCTCAGTACATGGGGAAC  650

seq1  ACCAGGGCCAAGAAGTGGGAGTGGGTGGATGGGGGGGG  688
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCCAAGAAGTGGGAGTGGGTGGATGGGGGGGG  688


seq1: chr6_108043331_108044392
seq2: B6Ng01-227K01.g_65_1236 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATGTGCCTTACGACATGTGTATACACTTCTAAGCAAACTGAGGGCATGCA  50

seq1  --------------------------------------------------  0
                                                        
seq2  GGATGTGCTTACACATGGTGATTACAACTACCTAACCCAAAGCCTGAGCA  100

seq1  ------AT-GTGCCTACAC-ATGT-GTATACACTACCTACCAAAACCTGA  41
            || |||||||||| |||| |||||||||| ||||| ||||||||
seq2  TGCCAGATGGTGCCTACACAATGTGGTATACACTA-CTACC-AAACCTGA  148

seq1  AGCATGCAAATATGCCTACACACACGT-GCACACATTACCCTCCACACAC  90
      ||||||| ||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCATGC-AATATGCCTACACACACGTGGCACACATTACCCTCCACACAC  197

seq1  AGTAAAA--TAAAATGACCTGAGTTTTCTACTTCTTCCCACAAACACTGA  138
      |||||||   ||||||||||||| ||||||||||||||||||||||||||
seq2  AGTAAAAATAAAAATGACCTGAGGTTTCTACTTCTTCCCACAAACACTGA  247

seq1  TTTTTAACCCCAACCCTGTACTCCTAGTGAAAGATGTCTGCACGGTAGCT  188
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACCCCAACCCTGTACTCCTAGTGAAAGATGTCTGCACGGTAGCT  297

seq1  TTCATATTCAGACACTGCCTCTTTGAATATTTAACCATCAAAACTGACTT  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATTCAGACACTGCCTCTTTGAATATTTAACCATCAAAACTGACTT  347

seq1  AAAGTTTCACAAGAGCACATCTTGTTCTGAACTGGCTGTACCCAAAAAAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCACAAGAGCACATCTTGTTCTGAACTGGCTGTACCCAAAAAAA  397

seq1  GG-AAAAAAAAAGTGACAAAGAACATCACACAGGCTGGCATTGTTGCCAG  337
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAAAAGTGACAAAGAACATCACACAGGCTGGCATTGTTGCCAG  447

seq1  AAAAGCACATCTGCCAAATTTGTTCTCGTCAAACCCAAGTCCTGGCCACT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCACATCTGCCAAATTTGTTCTCGTCAAACCCAAGTCCTGGCCACT  497

seq1  AGAACAGCATTTTAAAAGGAGACAAATAGGAGAGGAGACAAAAAGAAAAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGCATTTTAAAAGGAGACAAATAGGAGAGGAGACAAAAAGAAAAA  547

seq1  CATGATCAAACAGGGACTTGGGCAAGCATGTCTCCCCACAGGAAATAGCG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCAAACAGGGACTTGGGCAAGCATGTCTCCCCACAGGAAATAGCG  597

seq1  GGACCTGGGATGATGAGACCTGGGGAGATCAGGGCGAGTTCTGGTATTTT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGGGATGATGAGACCTGGGGAGATCAGGGCGAGTTCTGGTATTTT  647

seq1  AAAGGGGAGCTAGAACCCTAGCTTTTATTTATACAGGTTAGGCTTTTTTT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGAGCTAGAACCCTAGCTTTTATTTATACAGGTTAGGCTTTTTTT  697

seq1  TTTCCATTTCTGCTATGAACTTATATATAAATACAGTGTGTGTATTTATA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTCTGCTATGAACTTATATATAAATACAGTGTGTGTATTTATA  747

seq1  TATACATACTGCTTTCCCTTTTTAATATTCCAAACAGATAAAAATGTGTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACTGCTTTCCCTTTTTAATATTCCAAACAGATAAAAATGTGTT  797

seq1  CTTTTCACCACATAATAGTACAGTATCCGATTTTAAAATATCTTTAAATT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCACCACATAATAGTACAGTATCCGATTTTAAAATATCTTTAAATT  847

seq1  TTTCTCAGAGTCTGGGGACTAGGGAGCTAGCTCATCCGAGGAGATTCCCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGAGTCTGGGGACTAGGGAGCTAGCTCATCCGAGGAGATTCCCT  897

seq1  GTAAGTATAAGTTCAGTAATGTGGGAATGAACCTGTGTTCTGTCTCCATA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATAAGTTCAGTAATGTGGGAATGAACCTGTGTTCTGTCTCCATA  947

seq1  ACCCACATAAAACTCCAGCTGTAATGAGACATACTCATAATCGCAGCATT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACATAAAACTCCAGCTGTAATGAGACATACTCATAATCGCAGCATT  997

seq1  GGAGGCTGAGGGGCTGGGGACAGGTGAATCTAAAGTCTGAATCTCGGGTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGAGGGGCTGGGGACAGGTGAATCTAAAGTCTGAATCTCGGGTT  1047

seq1  TGCTGGGCACACAAACGTTACTTTTACTTTGTTCTTTTCTATCTACGAAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGCACACAAACGTTACTTTTACTTTGTTCTTTTCTATCTACGAAG  1097

seq1  AAAGTCATTTGAAATACTCCAGCCCCAGTTTCAGCCCGTAAAGAATGTTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCATTTGAAATACTCCAGCCCCAGTTTCAGCCCGTAAAGAATGTTG  1147

seq1  CTCTGGGGACACAGAGTAAGAATTC  1062
      |||||||||||||||||||||||||
seq2  CTCTGGGGACACAGAGTAAGAATTC  1172


| Home | SequenceCutter | Blast | Download |