BAC Information

Click to search

BAC

Clone NameB6Ng01-229J15
Chromosome6 (Build37)
Map Location 64,072,303 - 64,215,673
singlet/doubletdoublet
Overlap geneGrid2
Upstream geneLOC667099
Downstream geneAtoh1, LOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229J15.bB6Ng01-229J15.g
ACCGA042697GA042698
length609517
definitionB6Ng01-229J15.b B6Ng01-229J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,215,065 - 64,215,673)(64,072,303 - 64,072,825)
sequence
gaattccacattaagtatagtgtaaaatgctagcatatacataattacca
tgtctttgtggacttgtttccttgtcattttttaaaccatatgttttaca
tattttccttatgcatccattgtcaagtaatagctagaaaaatgcacatc
tctagaaactcaagagaaggagcaagacagatgttgaaagggaggcccag
actaactgatcacaacaatgtgttatagattcagcaatgaacagtgtagt
gaacactacacgatttgaagctgtccatccctcaactcaagaacaatatc
atgtaggcacatgtgcatctggtctatctcggccttgacacagtaactat
tggtagtctgtcctcacatctagaacctcagccactagcagaatctgcct
ctactattctcatttatccatctagaaccacacattaaagagtaggatat
atcaaagcaaccatatacacaatataaattagaaagtcatgaccactctg
aaatccctaggaaataaaggttcagaaaaaactaagaccttaattttgta
tctcagtttgagtcttggtacagaggcattctataatcattgggggtggg
ggtggggga

ctactgctgtgaaacatttgttgcaaacttttctctcctcattgaactcg
tcttgggacccttttaaaatagactctactataaatgtgaacctcagctt
cttaccagtgtgtattagagagaaaaaaaatacgacacaattctgtgtta
caatttctagtaagcttgagtttagaatatgtaaattactctaatttcaa
acctattgtttcattctttcaatgtggcatttagccctagctggttactt
ttggcacaacctgggcttttgatacgtgccatgttgaatctgtagaacaa
tttggaaatatcatcacctgaatggtattaagtgttctaaatagcaaaca
tgtcttttcatttacaagttttgtaatttctcttgataatgttttctttt
caaaattttaattacataaatttatttatataagagtgtgcctgcaagcc
tgaatgaagaatgcgcatgcatgcatgcatttgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_64215065_64215673
seq2: B6Ng01-229J15.b_46_654 (reverse)

seq1  TCCCCCACCCCCACCCCCAATGATTATAGAATGCCTCTGTACCAAGACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACCCCCACCCCCAATGATTATAGAATGCCTCTGTACCAAGACTC  50

seq1  AAACTGAGATACAAAATTAAGGTCTTAGTTTTTTCTGAACCTTTATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAGATACAAAATTAAGGTCTTAGTTTTTTCTGAACCTTTATTTCC  100

seq1  TAGGGATTTCAGAGTGGTCATGACTTTCTAATTTATATTGTGTATATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGATTTCAGAGTGGTCATGACTTTCTAATTTATATTGTGTATATGGT  150

seq1  TGCTTTGATATATCCTACTCTTTAATGTGTGGTTCTAGATGGATAAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTGATATATCCTACTCTTTAATGTGTGGTTCTAGATGGATAAATGA  200

seq1  GAATAGTAGAGGCAGATTCTGCTAGTGGCTGAGGTTCTAGATGTGAGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTAGAGGCAGATTCTGCTAGTGGCTGAGGTTCTAGATGTGAGGAC  250

seq1  AGACTACCAATAGTTACTGTGTCAAGGCCGAGATAGACCAGATGCACATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACCAATAGTTACTGTGTCAAGGCCGAGATAGACCAGATGCACATG  300

seq1  TGCCTACATGATATTGTTCTTGAGTTGAGGGATGGACAGCTTCAAATCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACATGATATTGTTCTTGAGTTGAGGGATGGACAGCTTCAAATCGT  350

seq1  GTAGTGTTCACTACACTGTTCATTGCTGAATCTATAACACATTGTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTCACTACACTGTTCATTGCTGAATCTATAACACATTGTTGTGA  400

seq1  TCAGTTAGTCTGGGCCTCCCTTTCAACATCTGTCTTGCTCCTTCTCTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAGTCTGGGCCTCCCTTTCAACATCTGTCTTGCTCCTTCTCTTGA  450

seq1  GTTTCTAGAGATGTGCATTTTTCTAGCTATTACTTGACAATGGATGCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAGAGATGTGCATTTTTCTAGCTATTACTTGACAATGGATGCATA  500

seq1  AGGAAAATATGTAAAACATATGGTTTAAAAAATGACAAGGAAACAAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATATGTAAAACATATGGTTTAAAAAATGACAAGGAAACAAGTCC  550

seq1  ACAAAGACATGGTAATTATGTATATGCTAGCATTTTACACTATACTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACATGGTAATTATGTATATGCTAGCATTTTACACTATACTTAAT  600

seq1  GTGGAATTC  609
      |||||||||
seq2  GTGGAATTC  609


seq1: chr6_64072303_64072825
seq2: B6Ng01-229J15.g_65_587

seq1  GAATTCCTACTGCTGTGAAACATTTGTTGCAAACTTTTCTCTCCTCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACTGCTGTGAAACATTTGTTGCAAACTTTTCTCTCCTCATTG  50

seq1  AACTCGTCTTGGGACCCTTTTAAAATAGACTCTACTATAAATGTGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCGTCTTGGGACCCTTTTAAAATAGACTCTACTATAAATGTGAACCT  100

seq1  CAGCTTCTTACCAGTGTGTATTAGAGAGAAAAAAAATACGACACAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTACCAGTGTGTATTAGAGAGAAAAAAAATACGACACAATTCT  150

seq1  GTGTTACAATTTCTAGTAAGCTTGAGTTTAGAATATGTAAATTACTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACAATTTCTAGTAAGCTTGAGTTTAGAATATGTAAATTACTCTAA  200

seq1  TTTCAAACCTATTGTTTCATTCTTTCAATGTGGCATTTAGCCCTAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACCTATTGTTTCATTCTTTCAATGTGGCATTTAGCCCTAGCTGG  250

seq1  TTACTTTTGGCACAACCTGGGCTTTTGATACGTGCCATGTTGAATCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTGGCACAACCTGGGCTTTTGATACGTGCCATGTTGAATCTGTA  300

seq1  GAACAATTTGGAAATATCATCACCTGAATGGTATTAAGTGTTCTAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTTGGAAATATCATCACCTGAATGGTATTAAGTGTTCTAAATAG  350

seq1  CAAACATGTCTTTTCATTTACAAGTTTTGTAATTTCTCTTGATAATGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGTCTTTTCATTTACAAGTTTTGTAATTTCTCTTGATAATGTTT  400

seq1  TCTTTTCAAAATTTTAATTACATAAATTTATTTATATAAGAGTGTGCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCAAAATTTTAATTACATAAATTTATTTATATAAGAGTGTGCCTG  450

seq1  CAAGCCTGAATGAAGAATGCGCATGCATGCATGCATTTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTGAATGAAGAATGCGCATGCATGCATGCATTTGTGTGTGTGTGT  500

seq1  GTGTGTGTGTGTGTGTGTGTGTG  523
      |||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTG  523


| Home | SequenceCutter | Blast | Download |