BAC Information

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BAC

Clone NameB6Ng01-229L14
Chromosome2 (Build37)6 (Build37)
Map Location 160,763,496 - 160,763,71748,540,415 - 48,541,306
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3
Downstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229L14.bB6Ng01-229L14.g
ACCGA042778GA042779
length222900
definitionB6Ng01-229L14.b B6Ng01-229L14.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(160,763,496 - 160,763,717)(48,540,415 - 48,541,306)
sequence
actcctagtcactcccattctcggggtgtaatagtggggtgatgggcaag
caacgaatcaggagctgtcacgccatatcaggtgctgaaatgtcacgctg
cgggttataaaagcagcgccattttcccggttcgggatcttcctgagaag
taagcaataaagctcttgccgcggaagattctggtttgttgcgtctttct
tgctggtcaagtgggacgcaat
gaattcttagttggagctgactcctgtaacaaaatctggattagccagag
gaaatcagatggcttccccctattttcctcaggtgagagccactaaggga
cgagtagttctcaagaaggtagccttgaatttcagcctatccagtgttgc
aataaacaagagtgaattctaattattttattttattttattttatttgg
ttttttgagacagggtttctctatatagccctggctttcctggaactcac
tttggagaccaggctggcctcgaactcagaaatctgcctgcctctgcctc
ctgagtgctgggattaaaggcatgcgccaccacgccctgctgaattctaa
ttttttatcatcagttttccactgtgttggagacctaaccagggccttcc
tggtaatcacgctgcctctgagatataccccaacccaaactgtgacaagg
caagggaaaggactttgagcctctaggggtggcagcttgtgaaaggttgg
tggggttcataaggggcagccagcaaagcttgatgatggtttgctttggt
actgtctccggcctcccagggcttcaagctgtcctcagcaccgttgctat
cctcagtggtgggcatcttctgtctcgtaacaggccaggaaggacagagt
gcctttctgcatctactccttaattgtcctcggccccagcagcaatcttt
gtatgggaagggttcccgctctggtctctcccactgtttttcttttgttt
caccagctgggagagccaaggaggcagggttatgtaggatttttacagcc
agtgggcttgtcctttacccaggtctgtgtgggatttggcctattgcatt
ctctcttcagaacaagctctgagggtccttcgatcggcctcacacatgtt

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_160763496_160763717
seq2: B6Ng01-229L14.b_51_272 (reverse)

seq1  ATTGCGTCCCGCTCGACCGGCAAGAAAGACGCAACAAACCAGAATCTTCC  50
      |||||||||| || |||| |||||||||||||||||||||||||||||||
seq2  ATTGCGTCCCACTTGACCAGCAAGAAAGACGCAACAAACCAGAATCTTCC  50

seq1  GTGGCAAAAGCTTTATTGCTTGCTTCTCAGGAAGATCCCGAACCGGGAAA  100
      | ||||| ||||||||||||| ||||||||||||||||||||||||||||
seq2  GCGGCAAGAGCTTTATTGCTTACTTCTCAGGAAGATCCCGAACCGGGAAA  100

seq1  ATGGCGCTGCTTTTATAACCCGCAGCGTGACGTTTCAGCACCTGATATGG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGGCGCTGCTTTTATAACCCGCAGCGTGACATTTCAGCACCTGATATGG  150

seq1  CGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATTACACCCC  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CGTGACAGCTCCTGATTCGTTGCTTGCCCATCACCCCACTATTACACCCC  200

seq1  GAGAATGGGAGTGACTAGGAGT  222
      ||||||||||||||||||||||
seq2  GAGAATGGGAGTGACTAGGAGT  222

seq1: chr6_48540415_48541306
seq2: B6Ng01-229L14.g_71_970

seq1  GAATTCTTAGTTGGAGCTGACTCCTGTAACAAAATCTGGATTAGCCAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTTGGAGCTGACTCCTGTAACAAAATCTGGATTAGCCAGAG  50

seq1  GAAATCAGATGGCTTCCCCCTATTTTCCTCAGGTGAGAGCCACTAAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGATGGCTTCCCCCTATTTTCCTCAGGTGAGAGCCACTAAGGGA  100

seq1  CGAGTAGTTCTCAAGAAGGTAGCCTTGAATTTCAGCCTATCCAGTGTTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTAGTTCTCAAGAAGGTAGCCTTGAATTTCAGCCTATCCAGTGTTGC  150

seq1  AATAAACAAGAGTGAATTCTAATTATTTTATTTTATTTTATTTTATTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAGAGTGAATTCTAATTATTTTATTTTATTTTATTTTATTTGG  200

seq1  TTTTTTGAGACAGGGTTTCTCTATATAGCCCTGGCTTTCCTGGAACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAGACAGGGTTTCTCTATATAGCCCTGGCTTTCCTGGAACTCAC  250

seq1  TTTGGAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTC  300

seq1  CTGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCTGCTGAATTCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGCTGGGATTAAAGGCATGCGCCACCACGCCCTGCTGAATTCTAA  350

seq1  TTTTTTATCATCAGTTTTCCACTGTGTTGGAGACCTAACCAGGGCCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTATCATCAGTTTTCCACTGTGTTGGAGACCTAACCAGGGCCTTCC  400

seq1  TGGTAATCACGCTGCCTCTGAGATATACCCCAACCCAAACTGTGACAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATCACGCTGCCTCTGAGATATACCCCAACCCAAACTGTGACAAGG  450

seq1  CAAGGGAAAGGACTTTGAGCCTCTAGGGGTGGCAGCTTGTGAAAGGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAAAGGACTTTGAGCCTCTAGGGGTGGCAGCTTGTGAAAGGTTGG  500

seq1  TGGGGTTCATAAGGGGCAGCCAGCAAAGCTTGATGATGGTTTGCTTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTCATAAGGGGCAGCCAGCAAAGCTTGATGATGGTTTGCTTTGGT  550

seq1  ACTGTCTCCGGCCTCCCAGGGCTTCAAGCTGTCCTCAGCACCGTTGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCCGGCCTCCCAGGGCTTCAAGCTGTCCTCAGCACCGTTGCTAT  600

seq1  CCTCAGTGGTGGGCATCTTCTGTCTCGTAACAGGCCAGGAAGGACAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGTGGGCATCTTCTGTCTCGTAACAGGCCAGGAAGGACAGAGT  650

seq1  GCCTTTCTGCATCTACTCCTTAATTGTCCTCGGCCCCAGCAGCAATCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGCATCTACTCCTTAATTGTCCTCGGCCCCAGCAGCAATCTTT  700

seq1  GTATGGGAA-GGTTCCCGCTCTGGTCTCTCCCACTG-TTTTCTTTTG-TT  747
      ||||||||| |||||||||||||||||||||||||| |||||||||| ||
seq2  GTATGGGAAGGGTTCCCGCTCTGGTCTCTCCCACTGTTTTTCTTTTGTTT  750

seq1  CACCAGCTGGGAGAGCCAAGGAGGCAGGGTTATGTAGGA-TTTTACAGCC  796
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CACCAGCTGGGAGAGCCAAGGAGGCAGGGTTATGTAGGATTTTTACAGCC  800

seq1  AGT-GGCTTGTCCTTTACCCAGGTCTGTGTGGGATTT-GCCTATTGCATT  844
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGTGGGCTTGTCCTTTACCCAGGTCTGTGTGGGATTTGGCCTATTGCATT  850

seq1  CTCTC-TCAGAAC-AGCTCTGAGGGTCCTTCGATCGGCCTCACACATGTT  892
      ||||| ||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTCAGAACAAGCTCTGAGGGTCCTTCGATCGGCCTCACACATGTT  900