BAC Information

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BAC

Clone NameB6Ng01-230H01
Chromosome6 (Build37)
Map Location 140,876,074 - 141,037,482
singlet/doubletdoublet
Overlap genenone
Upstream genePik3c2g, Plcz1, Capza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
Downstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230H01.bB6Ng01-230H01.g
ACCGA043304GA043305
length1,001841
definitionB6Ng01-230H01.b B6Ng01-230H01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(140,876,074 - 140,877,063)(141,036,649 - 141,037,482)
sequence
gaattctttttgcatcttctcaatgtttctttcaaagaaaaaacagtttt
aatttgatttattttggctttaaacttgatgatgctgaattaaccaattt
aaagtactctatactcttgatgttcttagaaacctgcaaaatctcacatg
tactgagatcacacgcatgttttcattgttgacttctgacctagttctct
tccatggtgaggaggcgcacactgcatttcaacatttctgacttggcaga
gacttgctttatggttctgtgttccgtcttggcagacatacatccatgca
tactgtcaagtaatgtgtgctcacagtttctagttctgtttggtttcatt
atgtccctgtggtttatgatgttttccagattattttttgtctaaaatat
tgtaccctagctctttatccactgcagagggaatgttgcttattgaactt
ctagtgaagttattgatatgattaaatctatctctactgtagagtgttag
ttgttcctactgcctctgcctaaacatccacagactccttccttgccttc
ctgaatcatttaaatattttttaaaaacatgagtggcttgtagtttttta
tttacatctttgcagtgtttattgtcggtgactcattataattcactata
agcatctgcagtctgtctagagttcatattacattgcttacgtgagatgg
agagccccacggttgtcccggttcgcttgctttctctgtctcctggctac
ttttctacagcagagatacaccatgttgtatctccatgacttctgtccca
aaaagaaaaggtaaacccacttacctcaatatttactaacccccagggcc
tccattgggctcccaggggggagttccctctaaccttgtagaaagacacg
agaagtatgactttcccctggtggtggctattccttgccagcatgaagac
aatgctaattcttctgcacaacacatcaggagggagcaggatgtagggaa
t
gaattcacttactgtgagagcgctgcctgctgtatatcaagccatttcca
atcctggccctcggttctagacaggtttgtgcacgacacaacccgaccca
aactaaatccccacctctccataaatgttaggaggttttatttaatttct
tagtgttaagacatggatcacatttatctttgtaatgaccatgtgtagaa
tggtatctgctgggtaacagcatctaggaaactgatggacactgattaaa
acctcacagccaatgctgggcatggtggcgcacgcctttaatcccagcac
ttgggaggcagaggcaggtggatttctgagttcaaggccagcctggtcca
cagagtgagttccatgacagccagggctactcagagaaatcctgtgttgg
gagaaaaaaaaaaaaaaaagaacctcatggccagcctgggctacaaaatg
agaccctgcctcaaaaataaaacctgatttgaagatctgttatttactta
agggctgtcacagaaatgttcatgtggcacatggtataaaatgtgagaaa
gaaattgaacaacttggcgttagaaggacagcagaaatgggagcatgacg
aacctggacctggacacagagtacagacacagagtacagcctcaagtttc
aaagcactaaattcggggcaagcctcatagttttctccatcaataacctg
aggtgaattgtatgtaggggtgtctgtccattgccaactgagaagagtat
tgaactgaactcttaaggtaaaagaattagccagaagtagcagacagcag
aagtatttgcagggtagtgtttgggggagagtggtgaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_140876074_140877063
seq2: B6Ng01-230H01.b_47_1047

seq1  GAATTCTTTTTGCATCTTCTCAATGTTTCTTTCAAAGAAAAAACAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTGCATCTTCTCAATGTTTCTTTCAAAGAAAAAACAGTTTT  50

seq1  AATTTGATTTATTTTGGCTTTAAACTTGATGATGCTGAATTAACCAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTTATTTTGGCTTTAAACTTGATGATGCTGAATTAACCAATTT  100

seq1  AAAGTACTCTATACTCTTGATGTTCTTAGAAACCTGCAAAATCTCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACTCTATACTCTTGATGTTCTTAGAAACCTGCAAAATCTCACATG  150

seq1  TACTGAGATCACACGCATGTTTTCATTGTTGACTTCTGACCTAGTTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGATCACACGCATGTTTTCATTGTTGACTTCTGACCTAGTTCTCT  200

seq1  TCCATGGTGAGGAGGCGCACACTGCATTTCAACATTTCTGACTTGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTGAGGAGGCGCACACTGCATTTCAACATTTCTGACTTGGCAGA  250

seq1  GACTTGCTTTATGGTTCTGTGTTCCGTCTTGGCAGACATACATCCATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCTTTATGGTTCTGTGTTCCGTCTTGGCAGACATACATCCATGCA  300

seq1  TACTGTCAAGTAATGTGTGCTCACAGTTTCTAGTTCTGTTTGGTTTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTCAAGTAATGTGTGCTCACAGTTTCTAGTTCTGTTTGGTTTCATT  350

seq1  ATGTCCCTGTGGTTTATGATGTTTTCCAGATTATTTTTTGTCTAAAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCTGTGGTTTATGATGTTTTCCAGATTATTTTTTGTCTAAAATAT  400

seq1  TGTACCCTAGCTCTTTATCCACTGCAGAGGGAATGTTGCTTATTGAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCTAGCTCTTTATCCACTGCAGAGGGAATGTTGCTTATTGAACTT  450

seq1  CTAGTGAAGTTATTGATATGATTAAATCTATCTCTACTGTAGAGTGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAGTTATTGATATGATTAAATCTATCTCTACTGTAGAGTGTTAG  500

seq1  TTGTTCCTACTGCCTCTGCCTAAACATCCACAGACTCCTTCCTTGCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTACTGCCTCTGCCTAAACATCCACAGACTCCTTCCTTGCCTTC  550

seq1  CTGAATCATTTAAATATTTTTTAAAAACATGAGTGGCTTGTAGTTTTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCATTTAAATATTTTTTAAAAACATGAGTGGCTTGTAGTTTTTTA  600

seq1  TTTACATCTTTGCAGTGTTTATTGTCGGTGACTCATTATAATTCACTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATCTTTGCAGTGTTTATTGTCGGTGACTCATTATAATTCACTATA  650

seq1  AGCATCTGCAGTCTGTCTAGAGTTCATATTACATTGCTTACGTGAGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTGCAGTCTGTCTAGAGTTCATATTACATTGCTTACGTGAGATGG  700

seq1  AGAGCCCCACGGTTGTCCCGGTTCGCTTGCTTTCTCTGTCTCCTGGCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCACGGTTGTCCCGGTTCGCTTGCTTTCTCTGTCTCCTGGCTAC  750

seq1  -TTTCTACAGCAGAGATACACCATGTTGTATCTCCATGACTTCTGTCCCA  799
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTACAGCAGAGATACACCATGTTGTATCTCCATGACTTCTGTCCCA  800

seq1  AAAAGAAAAGGT-AACCCACTTACCTCAATATTTACTAA-CCCCAGGG-C  846
      |||||||||||| |||||||||||||||||||||||||| |||||||| |
seq2  AAAAGAAAAGGTAAACCCACTTACCTCAATATTTACTAACCCCCAGGGCC  850

seq1  TCCATT-GGCTCC--AGGGGGAGTTTCCTCTAA-CTTGTAGAAAGACACG  892
      |||||| ||||||   ||||||||| ||||||| ||||||||||||||||
seq2  TCCATTGGGCTCCCAGGGGGGAGTTCCCTCTAACCTTGTAGAAAGACACG  900

seq1  AGAAGTATGACTTTCCCCT-GTGGT-GCTATT-CTTGCAAGCATGAAGAC  939
      ||||||||||||||||||| ||||| |||||| ||||| |||||||||||
seq2  AGAAGTATGACTTTCCCCTGGTGGTGGCTATTCCTTGCCAGCATGAAGAC  950

seq1  AATGCTAAATC-TCTGCACAACACATCAGGGAGGGAGCAAGATGTAGGGA  988
      |||||||| || |||||||||||||||| |||||||||| ||||||||||
seq2  AATGCTAATTCTTCTGCACAACACATCA-GGAGGGAGCAGGATGTAGGGA  999

seq1  AT  990
      ||
seq2  AT  1001

seq1: chr6_141036649_141037482
seq2: B6Ng01-230H01.g_69_909 (reverse)

seq1  CCTTTCACCAC-CTCCCC--AACACTA-CCTGCAAATACTTCTGCTGTCT  46
      | ||||||||| ||||||  ||||||| ||||||||||||||||||||||
seq2  CTTTTCACCACTCTCCCCCAAACACTACCCTGCAAATACTTCTGCTGTCT  50

seq1  GCTACTTCTGGCTAATTC-TTTACCTTAAGAGTTCAGTTCAATACTCTTC  95
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTACTTCTGGCTAATTCTTTTACCTTAAGAGTTCAGTTCAATACTCTTC  100

seq1  TCAGTTGGCAATGGACAGACA-CCCTACATACAATTCACCTCAGGTTATT  144
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCAGTTGGCAATGGACAGACACCCCTACATACAATTCACCTCAGGTTATT  150

seq1  GATGGAG-AAACTATGAGGCTTGCCCCGAATTTAGTGCTTTGAAACTTGA  193
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGAAAACTATGAGGCTTGCCCCGAATTTAGTGCTTTGAAACTTGA  200

seq1  GGCTGTACTCTGTGTCTGTACTCTGTGTCCAGGTCCAGGTTCGTCATGCT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTACTCTGTGTCTGTACTCTGTGTCCAGGTCCAGGTTCGTCATGCT  250

seq1  CCCATTTCTGCTGTCCTTCTAACGCCAAGTTGTTCAATTTCTTTCTCACA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCTGCTGTCCTTCTAACGCCAAGTTGTTCAATTTCTTTCTCACA  300

seq1  TTTTATACCATGTGCCACATGAACATTTCTGTGACAGCCCTTAAGTAAAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATACCATGTGCCACATGAACATTTCTGTGACAGCCCTTAAGTAAAT  350

seq1  AACAGATCTTCAAATCAGGTTTTATTTTTGAGGCAGGGTCTCATTTTGTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCTTCAAATCAGGTTTTATTTTTGAGGCAGGGTCTCATTTTGTA  400

seq1  GCCCAGGCTGGCCATGAGGTTCTTTTTTTTTTTTTTTTCTCCCAACACAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGCTGGCCATGAGGTTCTTTTTTTTTTTTTTTTCTCCCAACACAG  450

seq1  GATTTCTCTGAGTAGCCCTGGCTGTCATGGAACTCACTCTGTGGACCAGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTCTGAGTAGCCCTGGCTGTCATGGAACTCACTCTGTGGACCAGG  500

seq1  CTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGA  550

seq1  TTAAAGGCGTGCGCCACCATGCCCAGCATTGGCTGTGAGGTTTTAATCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCGCCACCATGCCCAGCATTGGCTGTGAGGTTTTAATCAG  600

seq1  TGTCCATCAGTTTCCTAGATGCTGTTACCCAGCAGATACCATTCTACACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATCAGTTTCCTAGATGCTGTTACCCAGCAGATACCATTCTACACA  650

seq1  TGGTCATTACAAAGATAAATGTGATCCATGTCTTAACACTAAGAAATTAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATTACAAAGATAAATGTGATCCATGTCTTAACACTAAGAAATTAA  700

seq1  ATAAAACCTCCTAACATTTATGGAGAGGTGGGGATTTAGTTTGGGTCGGG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCTCCTAACATTTATGGAGAGGTGGGGATTTAGTTTGGGTCGGG  750

seq1  TTGTGTCGTGCACAAACCTGTCTAGAACCGAGGGCCAGGATTGGAAATGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCGTGCACAAACCTGTCTAGAACCGAGGGCCAGGATTGGAAATGG  800

seq1  CTTGATATACAGCAGGCAGCGCTCTCACAGTAAGTGAATTC  834
      |||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATATACAGCAGGCAGCGCTCTCACAGTAAGTGAATTC  841