BAC Information

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BAC

Clone NameB6Ng01-230O09
Chromosome4 (Build37)6 (Build37)
Map Location 21,815,196 - 21,815,508114,121,062 - 114,122,194
singlet/doubletsingletsinglet
Overlap geneCoq3
Upstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik
Downstream gene6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911, 1700025O08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230O09.bB6Ng01-230O09.g
ACCGA043641GA043642
length5361,118
definitionB6Ng01-230O09.b B6Ng01-230O09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,815,196 - 21,815,508)(114,121,062 - 114,122,194)
sequence
gaattccttaacagacacccctgaagttgtgtctcctagatgactctgaa
tacaatcaggctgacgacaaagactaactaggagccaaccaaagactggg
ctgcgttcactagtgtgactcttaaatctgaacaaatcttttatcattgt
ctatgactttgatcgctttcgagaacacaggcatgttgttttgtatattg
gtgttgtattgaaagatcctggcagaatgtaaaaggtcacagaagccctg
aaattggcaaaatagattttattgttagtagaactagcttcactgattta
gaaaaataaaggtgcacaatgctttggccgctcctcgaacctgtgtgtct
gccaatgttctgaccaggtgtgtgcccattgctgcaccttcattagactc
tttccttctccctcccatacccatttcttgaagaatcaatcattttagaa
tagatattgtttagatctggaaatcccctactcccccccttctcccctga
gggcctataaaaactgggacttctttcccctcgagg

gaattctttgtttagctctgtaccccatttttaatggggttatttgaatt
tctggagttcagcttcttgagctctttgtatatattggatattagtcccc
tatcagatttaggattggtaaaatattctttcccaatctgttggtggcct
ttttgtcttattgacagtgtcttttgccctacagaagctttgcaatttta
tgaggtcccatttgtcgattcttgatcttacagcacaggccattgctgtt
ctgtttaggaatttttcccctgtgcccatatcttcgaggctttcccccac
tttctcctctataaatttcagtgctgacaacctttgtacagacaaaagct
tttctgtgtagacaaacacaagcgttgcgtgttccatgaagcacaaattg
caagtaaattcgtagggttcatgtttcccatctgattagaacactacctg
tgggctggtgctgtccttgctgatcttttgctcgtagctctgtgtattcc
aaggctttttgtctgcatgctcctgtgctgactttgcttggccttcattg
acaccagcagttggcccactgtgtcttcagcagacctgacccactgccta
tatctttaagctgcacctgttcaccccagtattgccacaaatggtgggac
tgagaaactgtgagaggctgagaagcccacaagacttcacttgtaggtca
agcattcattcccttacctaaaagcccaaaattcaaaatatccccaaatc
caaagctttctggggtctctgataggacacttgatatgactgatatgaca
cttgaagaaattacatgttgttcaattctggggactggtaggacacttga
agaagtccatattgtccaattctgttttgtgtacaaatttactgaaatat
ataaaattaccttcagatgtgcatttagatgaagaagagcatagctgaac
ttagtgtttcgtcttggtcccatattccaagctatctaatgggaacatat
tgttataatgttcccaatagtttgtacgaatacccacttgaaaaaatctt
gaatcacaagcatctgaattcacttctaactgctatgtaaacattccttt
tataagaaatgactcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21815196_21815508
seq2: B6Ng01-230O09.b_270_582 (reverse)

seq1  CCTCGAGGGGAAAGAGGACCCAGTTTTTATAGGCCCTCGGGGGGGGAGGG  50
      ||||||||||||||| | |||||||||||||||||||| ||||       
seq2  CCTCGAGGGGAAAGAAGTCCCAGTTTTTATAGGCCCTCAGGGG-------  43

seq1  AAGAAAGAAGAAGGGGGGAGTAGGGGATTTCCAGATCTAAACAATGTCTA  100
           |||||  ||||||||||||||||||||||||||||||||| ||||
seq2  -----AGAAG--GGGGGGAGTAGGGGATTTCCAGATCTAAACAATATCTA  86

seq1  TTC----------------TCAAGAAATGGGTATGGGAGGGGTATAAGGA  134
      |||                ||||||||||||||||||||||  | |||||
seq2  TTCTAAAATGATTGATTCTTCAAGAAATGGGTATGGGAGGG--AGAAGGA  134

seq1  AAGAGTCTAATGAAGGTGCAGCAATGGGCACACACTTGGTCAGAACATTG  184
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AAGAGTCTAATGAAGGTGCAGCAATGGGCACACACCTGGTCAGAACATTG  184

seq1  GCAGACACACAGGTTCTAGGAGTGGCCAGAGCATTGTGCACCTCTATTTT  234
      |||||||||||||||| ||||| ||||| |||||||||||||| ||||||
seq2  GCAGACACACAGGTTCGAGGAGCGGCCAAAGCATTGTGCACCTTTATTTT  234

seq1  TCTAAATCAGTGAAGCTAGTTCTGCTAACACTGACGTCTATCTTGCCAAT  284
      ||||||||||||||||||||||| |||||| | |  ||||| ||||||||
seq2  TCTAAATCAGTGAAGCTAGTTCTACTAACAATAAAATCTATTTTGCCAAT  284

seq1  TTCAGGGCTTCTGTGCCCTTTTACATTCT  313
      ||||||||||||||| |||||||||||||
seq2  TTCAGGGCTTCTGTGACCTTTTACATTCT  313


seq1: chr6_114121062_114122194
seq2: B6Ng01-230O09.g_66_1183

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTTTAATGGGGTTATTTGAATT  50

seq1  TCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAGTTCAGCTTCTTGAGCTCTTTGTATATATTGGATATTAGTCCCC  100

seq1  TATCAGATTTAGGATTGGTAAAATATTCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATTTAGGATTGGTAAAATATTCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACAGTGTCTTTTGCCCTACAGAAGCTTTGCAATTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACAGTGTCTTTTGCCCTACAGAAGCTTTGCAATTTTA  200

seq1  TGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAGGCCATTGCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCCCATTTGTCGATTCTTGATCTTACAGCACAGGCCATTGCTGTT  250

seq1  CTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTCCCCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGGAATTTTTCCCCTGTGCCCATATCTTCGAGGCTTTCCCCCAC  300

seq1  TTTCTCCTCTATAAATTTCAGTGCTGACAACCTTTGTACAGACAAAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTATAAATTTCAGTGCTGACAACCTTTGTACAGACAAAAGCT  350

seq1  TTTCTGTGTAGACAAACACAAGCGTTGCGTGTTCCATGAAGCACAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTAGACAAACACAAGCGTTGCGTGTTCCATGAAGCACAAATTG  400

seq1  CAAGTAAATTCGTAGGGTTCATGTTTCCCATCTGATTAGAACACTACCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAATTCGTAGGGTTCATGTTTCCCATCTGATTAGAACACTACCTG  450

seq1  TGGGCTGGTGCTGTCCTTGCTGATCTTTTGCTCGTAGCTCTGTGTATTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGTGCTGTCCTTGCTGATCTTTTGCTCGTAGCTCTGTGTATTCC  500

seq1  AAGGCTTTTTGTCTGCATGCTCCTGTGCTGACTTTGCTTGGCCTTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTTTTGTCTGCATGCTCCTGTGCTGACTTTGCTTGGCCTTCATTG  550

seq1  ACACCAGCAGTTGGCCCACTGTGTCTTCAGCAGACCTGACCCACTGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGCAGTTGGCCCACTGTGTCTTCAGCAGACCTGACCCACTGCCTA  600

seq1  TATCTTTAAGCTGCACCTGTTCACCCCAGTATTGCCACAAATGGTGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTAAGCTGCACCTGTTCACCCCAGTATTGCCACAAATGGTGGGAC  650

seq1  TGAGAAACTGTGAGAGGCTGAGAAGCCCACAAGACTTCACTTGTAGGTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACTGTGAGAGGCTGAGAAGCCCACAAGACTTCACTTGTAGGTCA  700

seq1  AGCATTCATTCCCTTACCTAAAAGCCCAAAATTCAAAATATCCCCAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCATTCCCTTACCTAAAAGCCCAAAATTCAAAATATCCCCAAATC  750

seq1  CAAAGCTTTCTGGGGTCTCTGATAGGACACTTGATATGACTGATATGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTTCTGGGGTCTCTGATAGGACACTTGATATGACTGATATGACA  800

seq1  CTTGAAGAAATTACATGTTGTTCAATTCTGGGGACTGGTAGGACACTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGAAATTACATGTTGTTCAATTCTGGGGACTGGTAGGACACTTGA  850

seq1  AGAAGTCCATATTGTCCAATTCTGTTTTGTGTACAAATTTACTGAAATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCCATATTGTCCAATTCTGTTTTGTGTACAAATTTACTGAAATAT  900

seq1  ATAAAATTACCTTCAGGATGTGCATTTAAGATGAAGAAGAGCATAGCTGA  950
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  ATAAAATTACCTTCA-GATGTGCATTT-AGATGAAGAAGAGCATAGCTGA  948

seq1  ACTTAGTGTTTCGTCTTGGTCCCATA-TCCAAGCTATCTTAATGGGAACA  999
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  ACTTAGTGTTTCGTCTTGGTCCCATATTCCAAGCTATC-TAATGGGAACA  997

seq1  TA-TGTATAAATGTCCCAAATAGGTTTGTACGAATAACCCAACTTTGAAA  1048
      || |||   ||||| || |||| |||||||||||| |||||   ||||||
seq2  TATTGTTATAATGTTCCCAATA-GTTTGTACGAAT-ACCCA--CTTGAAA  1043

seq1  AAATCTGAAATCACAAGCAATCTGAAATTCAACCTTCTAAACTGGCTATG  1098
      ||||||  |||||||||| ||||| ||||||  ||||| |||| ||||||
seq2  AAATCTTGAATCACAAGC-ATCTG-AATTCA--CTTCT-AACT-GCTATG  1087

seq1  TAAAACATTTCCTTTTTAATAAGAAATGACTCAAA  1133
      | ||||| ||||||||  |||||||||||||||||
seq2  T-AAACA-TTCCTTTT--ATAAGAAATGACTCAAA  1118


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