BAC Information

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BAC

Clone NameB6Ng01-232D05
Chromosome6 (Build37)
Map Location 141,357,096 - 141,516,472
singlet/doubletdoublet
Overlap genePde3a, Slco1c1
Upstream geneLOC269810, Plekha5, Aebp2, EG664868, LOC664875
Downstream geneSlco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232D05.bB6Ng01-232D05.g
ACCGA044597GA044598
length1,1541,167
definitionB6Ng01-232D05.b B6Ng01-232D05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,357,096 - 141,358,244)(141,515,296 - 141,516,472)
sequence
gaattctacacaatattgatgggaacaggtattatcacaggaattattct
aaagggctgagacacaatgccatatgacattaatgagatcatagggggaa
tataaggatggtcaagttagaacactgggagatgctgtgtcacaacagag
accttcaaagcggggttggcagtgttagtgcgagtgccagcaatgagcag
ccaggatggtaattccagaaggaagcttcacacaaatacgcgagggacta
ctctagctgtactgcagccagaggagaacaaatgtcaatctggaaatgct
agttgtgcatgcgataatttaactacagcagcagatagactcccagaaga
atatctgaagagaaaaacagaagaaaggccagttcttgggaattactcac
tggtcaggctgagaggaagccagggagggaggtactgtgtgcacatgatg
cacatgaagtcagcagtgggagaaaatgagtcagaactgagcagtactgt
cagagagaagagggctaagaccatagacgcaacagaatgaaaatgatggg
aataactttggtttgcttttgataaagaggtgatgttttaaaggggaatc
caggagttgaaccaggattagggtgagatggaaaaagcttttttcaaaag
aaaggtagaattgtggagagagccagggacagaagggaattaaatgctga
gtgtctatcatggcggacacaagaaatgtgaaacaaagcatcagagtagc
tccatagttgcctaatagtgggggagtctgctgatcacagtacagagtgc
acctgtgcacaaagggctccctttgactcctgtgtataaaggttttcttt
cacacagcccacctctccctccctctccatcccagccatatataccactc
cagaaaaccctgagcatattcccagatgaacaacatattggagaatgccc
cccaagcatatgcaaatgtggaaaagctttgggaaaattatatctgtccc
cacagcttggagatgaattggtgacccagtcatacaaatgatagcaggct
ttctgacccaggccctttcctttttggggaggcaggctccagttgtggga
gatcttgagtggttgaaataatgttacagatgtccaaagatgagctaggc
ttgg
gaattctgggattacaggtgtgagccattttttcctgctcattttcatca
tttttaaaaaatgattacttggggcagggagaaattcaaagtataatgat
acatatatgtgaaagtgccataataaaatacattcatgaaacgcattgct
aactgtgctaactttaaaaagtcagaacaaaataaaataatgatgaattc
aaaatgaaattcaatgtcaacacttggcaatattttttcatgtaaaatag
aattgttcacagttttttggttgatttacctcataaacatggaaagtaca
cagggaattttaagcttcaggatgtggcagaaaatgagctgtaggagcac
agagctacatgagtgtgcttggcactgtacctgaaagcgtgggagtcata
cagcctgcaggagcctctgcttccacatttcttaaatccccatttgaggc
atgaagtgtcaatcaaaacaccaaagtacacaggggctgggattcctgct
gtaagaaacataaatgatcgcttctaagtttttggccataagaagtgacc
cagaaccacttaccttgagctcaggaatcactgattaggtagtgaaaacc
cacaattcttccactgagacctctttctatggctcagagtttggtcacaa
gctcaggacccatgcagtaactgtcagtggtttaggtctagatgcatgtc
tcctggaaattcacactcaatgtgaacacaacttctccctcaccaagtgg
ccaaggcaatgaacctggatgccacctctgagcccttctcattttaaaac
ccaagccataaaatctctttccttaggtatatatcctcctctctctgctt
ctgctctgatgtaaatctgaaggagggtgtgtgtacagctcactggtaga
gaatttgtctagcatacatccaagcccagggtttaattcctagacacccc
aaccctaataaaagcaatagccagggtctttttttgcccatttcccttaa
ctctctctactctatttactaagcaaataaccaacacagaataattgccc
aaagtattccagacaaacatgacatgtctgctcatctgagtcatatattg
tctatgttcgaatctgcttctgacttttcaaggaataactgctccacccc
tcctggccgaacgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141357096_141358244
seq2: B6Ng01-232D05.b_43_1196

seq1  GAATTCTACACAATATTGATGGGAACAGGTATTATCACAGGAATTATTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACACAATATTGATGGGAACAGGTATTATCACAGGAATTATTCT  50

seq1  AAAGGGCTGAGACACAATGCCATATGACATTAATGAGATCATAGGGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTGAGACACAATGCCATATGACATTAATGAGATCATAGGGGGAA  100

seq1  TATAAGGATGGTCAAGTTAGAACACTGGGAGATGCTGTGTCACAACAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGATGGTCAAGTTAGAACACTGGGAGATGCTGTGTCACAACAGAG  150

seq1  ACCTTCAAAGCGGGGTTGGCAGTGTTAGTGCGAGTGCCAGCAATGAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCAAAGCGGGGTTGGCAGTGTTAGTGCGAGTGCCAGCAATGAGCAG  200

seq1  CCAGGATGGTAATTCCAGAAGGAAGCTTCACACAAATACGCGAGGGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGGTAATTCCAGAAGGAAGCTTCACACAAATACGCGAGGGACTA  250

seq1  CTCTAGCTGTACTGCAGCCAGAGGAGAACAAATGTCAATCTGGAAATGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCTGTACTGCAGCCAGAGGAGAACAAATGTCAATCTGGAAATGCT  300

seq1  AGTTGTGCATGCGATAATTTAACTACAGCAGCAGATAGACTCCCAGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGCATGCGATAATTTAACTACAGCAGCAGATAGACTCCCAGAAGA  350

seq1  ATATCTGAAGAGAAAAACAGAAGAAAGGCCAGTTCTTGGGAATTACTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGAAGAGAAAAACAGAAGAAAGGCCAGTTCTTGGGAATTACTCAC  400

seq1  TGGTCAGGCTGAGAGGAAGCCAGGGAGGGAGGTACTGTGTGCACATGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAGGCTGAGAGGAAGCCAGGGAGGGAGGTACTGTGTGCACATGATG  450

seq1  CACATGAAGTCAGCAGTGGGAGAAAATGAGTCAGAACTGAGCAGTACTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGAAGTCAGCAGTGGGAGAAAATGAGTCAGAACTGAGCAGTACTGT  500

seq1  CAGAGAGAAGAGGGCTAAGACCATAGACGCAACAGAATGAAAATGATGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAAGAGGGCTAAGACCATAGACGCAACAGAATGAAAATGATGGG  550

seq1  AATAACTTTGGTTTGCTTTTGATAAAGAGGTGATGTTTTAAAGGGGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTGGTTTGCTTTTGATAAAGAGGTGATGTTTTAAAGGGGAATC  600

seq1  CAGGAGTTGAACCAGGATTAGGGTGAGATGGAAAAAGCTTTTTTCAAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTTGAACCAGGATTAGGGTGAGATGGAAAAAGCTTTTTTCAAAAG  650

seq1  AAAGGTAGAATTGTGGAGAGAGCCAGGGACAGAAGGGAATTAAATGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTAGAATTGTGGAGAGAGCCAGGGACAGAAGGGAATTAAATGCTGA  700

seq1  GTGTCTATCATGGCGGACACAAGAAATGTGAAACAAAGCATCAGAGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTATCATGGCGGACACAAGAAATGTGAAACAAAGCATCAGAGTAGC  750

seq1  TCCATAGTTGCCTAATAGTGGGGGAGTCTGCTGATCACAGTACAGAGTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGTTGCCTAATAGTGGGGGAGTCTGCTGATCACAGTACAGAGTGC  800

seq1  ACCTGTGCACAAAGGGCTCCCTTTGACTCCTGTGTAT-AAGGTTTTCTTT  849
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTGTGCACAAAGGGCTCCCTTTGACTCCTGTGTATAAAGGTTTTCTTT  850

seq1  CACACAGCCCACCTCTCCCTCCCTCTCCATCCCAGCCATATATACCACTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGCCCACCTCTCCCTCCCTCTCCATCCCAGCCATATATACCACTC  900

seq1  CAGAAAA-CCTGAGCATATTCCCAGATGAACAACATATTGGAGAATGCCC  948
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACCCTGAGCATATTCCCAGATGAACAACATATTGGAGAATGCCC  950

seq1  CCAAAGCATATGCAAATGTGGAAAAGCTTT-GGAAAATAATATCTGT-CC  996
      || ||||||||||||||||||||||||||| ||||||| |||||||| ||
seq2  CCCAAGCATATGCAAATGTGGAAAAGCTTTGGGAAAATTATATCTGTCCC  1000

seq1  CACAGC-TGGAGAAGGAATGGTGA-CCAGTCATACAAAATGATTAGCAGG  1044
      |||||| |||||| | | |||||| |||||||||| |||||| |||||||
seq2  CACAGCTTGGAGATGAATTGGTGACCCAGTCATAC-AAATGA-TAGCAGG  1048

seq1  C-TTCTGACCCAAGGCCTTTTCCTTTTTGGGGGAGGCAGGGTTCAG-TGT  1092
      | ||||||||| ||||| |||||||||| ||||||||||| | ||| |||
seq2  CTTTCTGACCC-AGGCCCTTTCCTTTTT-GGGGAGGCAGGCTCCAGTTGT  1096

seq1  GGGAGATCTTGAGTGGTTGAAATAATGTTACAGATGTCAAAAGATGAGCT  1142
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGAGATCTTGAGTGGTTGAAATAATGTTACAGATGTCCAAAGATGAGCT  1146

seq1  A-GCTTGG  1149
      | ||||||
seq2  AGGCTTGG  1154

seq1: chr6_141515296_141516472
seq2: B6Ng01-232D05.g_69_1235 (reverse)

seq1  GGGGCGTTCGGCAAG--AGGGTGGAGCATGTTAATCACTGAAAAAAGTTC  48
      |||||||||||| ||   |||||||||| |||| ||  ||||||    ||
seq2  GGGGCGTTCGGCCAGGAGGGGTGGAGCA-GTTATTCCTTGAAAA---GTC  46

seq1  AGGGAAGCAGGTATCTGAAACATAAGACAATTAATATGACTTCAGATGAG  98
      |  ||||||| |   |  ||||| |||||||  ||||||| |||||||||
seq2  A--GAAGCAGAT---TCGAACAT-AGACAAT--ATATGAC-TCAGATGAG  87

seq1  GCCAGACATGTCATGTTTGGTCTTGGAATACCTTGGGCAATTA-TCTGTG  147
        |||||||||||||||| ||| |||||||| ||||||||||| ||||||
seq2  --CAGACATGTCATGTTT-GTC-TGGAATACTTTGGGCAATTATTCTGTG  133

seq1  -TGGTTATTTGCTTAGTAAATAGAGTAGAGAGAGTTAAGGG-AATTGGCA  195
       |||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  TTGGTTATTTGCTTAGTAAATAGAGTAGAGAGAGTTAAGGGAAATGGGCA  183

seq1  AAAAAGAACCCTTGGCTATTGCTTTTATTAGGG-TGGGGTGTCTAGGAAT  244
      |||||  |||| ||||||||||||||||||||| ||||||||||||||||
seq2  AAAAAAGACCC-TGGCTATTGCTTTTATTAGGGTTGGGGTGTCTAGGAAT  232

seq1  TAAACCCTGGGCTTGGATGTATGCTAGACAAATTCTCTACCAGTGAGCTG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCTGGGCTTGGATGTATGCTAGACAAATTCTCTACCAGTGAGCTG  282

seq1  TACACACACCCTCCTTCAGATTTACATCAGAGCAGAAGCAGAGAGAGGAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCCTCCTTCAGATTTACATCAGAGCAGAAGCAGAGAGAGGAG  332

seq1  GATATATACCTAAGG-AAGAGATTTTATGGCTTGGGTTTTAAAATGAGAA  393
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GATATATACCTAAGGAAAGAGATTTTATGGCTTGGGTTTTAAAATGAGAA  382

seq1  GGGCTCAGAGGTGGCATCCAGGTTCATTGCCTTGGCCACTTGGTGAGGGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGAGGTGGCATCCAGGTTCATTGCCTTGGCCACTTGGTGAGGGA  432

seq1  GAAGTTGTGTTCACATTGAGTGTGAATTTCCAGGAGACATGCATCTAGAC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGTGTTCACATTGAGTGTGAATTTCCAGGAGACATGCATCTAGAC  482

seq1  CTAAACCACTGACAGTTACTGCATGGGTCCTGAGCTTGTGACCAAACTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACCACTGACAGTTACTGCATGGGTCCTGAGCTTGTGACCAAACTCT  532

seq1  GAGCCATAGAAAGAGGTCTCAGT-GAAGAATTGTGGGTTTTCACTACCTA  592
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GAGCCATAGAAAGAGGTCTCAGTGGAAGAATTGTGGGTTTTCACTACCTA  582

seq1  ATCAGTGATTCCTGAGCTCAAGGTAAGTGGTTCTGGGTCACTTCTTATGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTGATTCCTGAGCTCAAGGTAAGTGGTTCTGGGTCACTTCTTATGG  632

seq1  CCAAAAACTTAGAAGCGATCATTTATGTTTCTTACAGCAGGAATCCCAGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAACTTAGAAGCGATCATTTATGTTTCTTACAGCAGGAATCCCAGC  682

seq1  CCCTGTGTACTTTGGTGTTTTGATTGACACTTCATGCCTCAAATGGGGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTACTTTGGTGTTTTGATTGACACTTCATGCCTCAAATGGGGAT  732

seq1  TTAAGAAATGTGGAAGCAGAGGCTCCTGCAGGCTGTATGACTCCCACGCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAATGTGGAAGCAGAGGCTCCTGCAGGCTGTATGACTCCCACGCT  782

seq1  TTCAGGTACAGTGCCAAGCACACTCATGTAGCTCTGTGCTCCTACAGCTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTACAGTGCCAAGCACACTCATGTAGCTCTGTGCTCCTACAGCTC  832

seq1  ATTTTCTGCCACATCCTGAAGCTTAAAATTCCCTGTGTACTTTCCATGTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGCCACATCCTGAAGCTTAAAATTCCCTGTGTACTTTCCATGTT  882

seq1  TATGAGGTAAATCAACCAAAAAACTGTGAACAATTCTATTTTACATGAAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGGTAAATCAACCAAAAAACTGTGAACAATTCTATTTTACATGAAA  932

seq1  AAATATTGCCAAGTGTTGACATTGAATTTCATTTTGAATTCATCATTATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGCCAAGTGTTGACATTGAATTTCATTTTGAATTCATCATTATT  982

seq1  TTATTTTGTTCTGACTTTTTAAAGTTAGCACAGTTAGCAATGCGTTTCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGTTCTGACTTTTTAAAGTTAGCACAGTTAGCAATGCGTTTCAT  1032

seq1  GAATGTATTTTATTATGGCACTTTCACATATATGTATCATTATACTTTGA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATTTTATTATGGCACTTTCACATATATGTATCATTATACTTTGA  1082

seq1  ATTTCTCCCTGCCCCAAGTAATCATTTTTTAAAAATGATGAAAATGAGCA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCTGCCCCAAGTAATCATTTTTTAAAAATGATGAAAATGAGCA  1132

seq1  GGAAAAAATGGCTCACACCTGTAATCCCAGAATTC  1177
      |||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATGGCTCACACCTGTAATCCCAGAATTC  1167