BAC Information

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BAC

Clone NameB6Ng01-233F19
Chromosome6 (Build37)
Map Location 134,305,018 - 134,306,091
singlet/doubletsinglet
Overlap genenone
Upstream geneEG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063, Etv6, LOC100043660
Downstream geneBcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d, LOC100043668, Hebp1, 8430419L09Rik, Gsg1, Pbp2, LOC100043890
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-233F19.bB6Ng01-233F19.g
ACCGA045444GA045445
length1,0621,066
definitionB6Ng01-233F19.b B6Ng01-233F19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaattccctgcaaccacatggtggctcacaaccatttgtaacaga
ctctgatgccctcttctggggtgtttgaagaaagtgacagtgtactcata
taaaacaaataaataaataaatcttaaaaaacaaacaaacacacagacaa
caaacattatgttaacattttcaatgcaagtacagtagatttctgggccg
gttttcgtcatccacaaccatagccactggacagcacccctgcccatttc
ccttttccagcatgcagcagccagcattctgctgccctttactaaaacag
tagagcatcaggcacgttttcttactatctgatcacttccatttttattt
attatttaaggctgcgttgcatatatgtgagccgagttgatttagcccca
tctatctgttgatgtacatcatgtttgcttctacctcctggtttgaacag
tctgccacaatggagtataaatgtctgtctgaagtctagtgtactggctg
gttttgtgtgtcaacttgacacagctggagttatcacagagaaaggagct
tcagttgaggaaatgcctccatgagatccaactctaaggcattttctcaa
ttagtgatcaagggggaaaggccccttgtgggtgggaccatctttgggct
ggtagtcttggttctgtgagagagcaggctgagcaagccaggggaagcaa
gccagtaaagaccatccctccatggcctctgcatcagctcctgcttcctg
acctgcttgagttccagtcctgacttccttggtgatgaacagcagtatgg
aagtgtaagccgaataaatcctttcctccccaacttgcttcttggtcatg
atgtttgtgcaggaatagaaaccctgtctaagacatctagccttcatttc
ttttgggtatgtagttagaagtgggatgtctgggtcacaccatttttaag
cttcaggagcccttatcaattaactctcctagccttatctcacaagttcc
tcgcctccatcctggaatcagttatttttctaaagagctttgagttcttt
taagagtggtat
gaattcagaaaaccaaataacaagaaacaaagcaacacagtcaataaatg
gactaataaaatgaactggaagttttcaaaagatgaagtacatgtgacca
ataaacacataaccatgggtagtaagaaccatggattgtcctttttctag
tttcaagacctacacacacactcatacacactcacacacacacacactca
cacacacaagtctttgatctgcatatggaaaagatgtgcagtgtttgcct
gagttacttctctcagcctaataacttccagctccatccactttcatttc
tttgtggctgaataaaatttcagtgtgagtgtgcaccatgttaaatctat
tcttccgttggtgggatagttccattcttagcttctgtgagtaagcaaca
ataaacgtgcatttacagatagatatctctgttgtgagacttagagaaag
accacaaacagctaaagcaatcctgggcaaaacaccaatatcaagctatc
acagttcctggcctcaaattgtgctacagagccatagatatatggccctg
aattcagtccccagaatcacacacaaaacagattataataaaaaaaacaa
ttgtattgtatcaaaggcaataaagaattcatcaaaaggaaaaaaaatgg
gtatagctcaattatataaaaagatgcattggcaaattatttgataatac
aattaataagtgaatcacaagataaatcataagtataattttttgctgat
ttgacatcaaataatcatcaaataatgacatcaacataaaatttctacta
caccatgaaaataaggacacaaatgtcatcagttcaacaaatatttaagg
taaccaggcagtggtggcacatgtttgtaatcccagcatttgggaggcag
agcaagcggatttctgagttagaggccagcctgttctacagagtgtgttc
taggacagccaggactgcacagagaaaccctgtctcaaaaaaccaaaaaa
gaaagaaaggaaaaatttaagtagaaatttgcagaaaattgcaaatacct
tgaatcttgcagctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134305018_134306091
seq2: B6Ng01-233F19.g_69_1134

seq1  GAATTCAGAAAACCAAATAACAAGAAACAAAGCAACACAGTCAATAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAAACCAAATAACAAGAAACAAAGCAACACAGTCAATAAATG  50

seq1  GACTAATAAAATGAACTGGAAGTTTTCAAAAGATGAAGTACATGTGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATAAAATGAACTGGAAGTTTTCAAAAGATGAAGTACATGTGACCA  100

seq1  ATAAACACATAACCATGGGTAGTAAGAACCATGGATTGTCCTTTTTCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACATAACCATGGGTAGTAAGAACCATGGATTGTCCTTTTTCTAG  150

seq1  TTTCAAGACCTACACACACACTCATACACACTCACACACACACACACTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACCTACACACACACTCATACACACTCACACACACACACACTCA  200

seq1  CACACACAAGTCTTTGATCTGCATATGGAAAAGATGTGCAGTGTTTGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAGTCTTTGATCTGCATATGGAAAAGATGTGCAGTGTTTGCCT  250

seq1  GAGTTACTTCTCTCAGCCTAATAACTTCCAGCTCCATCCACTTTCATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTACTTCTCTCAGCCTAATAACTTCCAGCTCCATCCACTTTCATTTC  300

seq1  TTTGTGGCTGAATAAAATTTCAGTGTGAGTGTGCACCATGTTAAATCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGGCTGAATAAAATTTCAGTGTGAGTGTGCACCATGTTAAATCTAT  350

seq1  TCTTCCGTTGGTGGGATAGTTCCATTCTTAGCTTCTGTGAGTAAGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCGTTGGTGGGATAGTTCCATTCTTAGCTTCTGTGAGTAAGCAACA  400

seq1  ATAAACGTGCATTTACAGATAGATATCTCTGTTGTGAGACTTAGAGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACGTGCATTTACAGATAGATATCTCTGTTGTGAGACTTAGAGAAAG  450

seq1  ACCACAAACAGCTAAAGCAATCCTGGGCAAAACACCAATATCAAGCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAAACAGCTAAAGCAATCCTGGGCAAAACACCAATATCAAGCTATC  500

seq1  ACAGTTCCTGGCCTCAAATTGTGCTACAGAGCCATAGATATATGGCCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCTGGCCTCAAATTGTGCTACAGAGCCATAGATATATGGCCCTG  550

seq1  AATTCAGTCCCCAGAATCACACACAAAACAGATTATAATAAAAAAAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGTCCCCAGAATCACACACAAAACAGATTATAATAAAAAAAACAA  600

seq1  TTGTATTGTATCAAAGGCAATAAAGAATTCATCAAAAGGAAAAAAAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGTATCAAAGGCAATAAAGAATTCATCAAAAGGAAAAAAAATGG  650

seq1  GTATAGCTCAATTATATAAAAAGATGCATTGGCAAATTATTTGATAATAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGCTCAATTATATAAAAAGATGCATTGGCAAATTATTTGATAATAC  700

seq1  AATTAATAAGTGAATCACAAGATAAATCATAAGTATAATTTTTTGCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAAGTGAATCACAAGATAAATCATAAGTATAATTTTTTGCTGAT  750

seq1  TTGACATCAAATAATCATCAAATAATGACATCAACATAAAATTTCTACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCAAATAATCATCAAATAATGACATCAACATAAAATTTCTACTA  800

seq1  CACCATGAAAATAAGGACACAAATGTCATCAGTTCAACAAATATTTAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGAAAATAAGGACACAAATGTCATCAGTTCAACAAATATTTAAGG  850

seq1  TAACCAGGCAGTGGTGGCACATGTTTGTAATCCCAGCATTTGGGAGGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGGCAGTGGTGGCACATGTTTGTAATCCCAGCATTTGGGAGGCAG  900

seq1  AGGCAGGCGGATTTCTGAGTTAGAGGCCAGCCTGGTCTACAGAGTGTGTT  950
      | ||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  A-GCAAGCGGATTTCTGAGTTAGAGGCCAGCCTGTTCTACAGAGTGTGTT  949

seq1  CTAGGACAGCCAGGACTGCACAGAGAAACCCTGTCTCAAAAAAACCAAAA  1000
      |||||||||||||||||||||||||||||||||||||||||||  | |||
seq2  CTAGGACAGCCAGGACTGCACAGAGAAACCCTGTCTCAAAAAA--CCAAA  997

seq1  AAAGAAAGAAAAGAAAAAAATTTAAGGTAGAAATTTGCAGGAAAATTGCA  1050
      ||||||||||| |  |||||||||| ||||||||||||| ||||||||||
seq2  AAAGAAAGAAAGG--AAAAATTTAA-GTAGAAATTTGCA-GAAAATTGCA  1043

seq1  AATACCCTGAAATCTTGCAGCTCA  1074
      |||||| || ||||||||||||||
seq2  AATACCTTG-AATCTTGCAGCTCA  1066