BAC Information

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BAC

Clone NameB6Ng01-234B05
Chromosome6 (Build37)
Map Location 44,304,269 - 44,434,957
singlet/doubletdoublet
Overlap genenone
Upstream geneTpk1, LOC665747, LOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234B05.bB6Ng01-234B05.g
ACCGA045938GA045939
length1,1771,226
definitionB6Ng01-234B05.b B6Ng01-234B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,304,269 - 44,305,452)(44,433,763 - 44,434,957)
sequence
gaattccatattctcaattgacttttccattaccacatacaatttttaaa
attcattttaatctttctaatgaaaaacaacgacctacatgggtttgatt
tgtatcgtaaatgatcatagtaagctaagagactcttttcataattttac
ttatcactaagaagtactatgtgcacccaattatataaatctattctata
aaatttaaagtatctaaagattaggaaacatgaagttaagaatgtattct
acctctaaaagcaatgattcgtttggaaaattgaaaggactatgttttca
aatgatttgaaaaagatttccaaacacatgcttgcagattccagatttcc
tttatccttctgctgtgttggggcatcatttaatgcagcctaaatttgca
tgagttaggccctggaatgtagtgatggaaatcctgtagagccttgggaa
aaaaaaaaggtggcttatgggcttgtgtcattgaggtcctgcttttgtga
aaggacagtatatttctcacaggaacttggagttatcctttgagagttct
cacaaaaggatccagcatgatcctctttcttgcagtttcctagatgtttt
ctgtgttttccagtctgtcatttgcacatttggcctcccttactgtgagt
caaataaagcttctttgtttatggcattaggcaccatagatacctcacta
tgatggtggaggccatctttacatgccatgattttccattttcttctgcc
ttttagtcttttatctgaattacagcagtatgctcacattagctaaaata
tgacaattctaagaccattataaaaacttttttgtacatagaatatgaac
atttccccaagctttctcaagagaatgacaatttataaatgcatgcattt
gcatttgcattactttctgttgggaaagctcactgacactcttgaactgt
cacatgacctccatcatcactaatcgaaatgaaatgtcaaatccttcata
gactttctacttctttttcttctttcgtctctgacactcttttttgtact
aagtctcagtgtgccacccagactggccttaagtctaaaactctgctgca
gccacagtgttggacttcaggaatctgcaacaataccacaaggttccatc
cttatctgaacttcgctatactttttt

gaattcaattaggagctcacaagagaaaaatcaacatacacaaatatcca
ctcatatagacatagacttggggtgaaatttactttggtcttataatgaa
ttcatgaacactttaggaaatactgtaacaccatttttatgaggctgaca
cactacctactgcattaaggaggcacctaagacctcacctataaattctg
tttccttatctctagcgcacagagcttttttgtttttgtttgtttgtttg
tttgttttttgttttagttcttcaagtcatttgaaattgtttttataatt
tttcttaaggacatattacatggttttaaaacaacccttaaatattcaat
atactttaattccattgttatataaactcttaaattctatttttataatt
actgttggtatatgattttttgtgggatttaatttcagcttcaagaactt
ttaataacaaaccccctagtcttttataatgtttttttatcatacacact
ctgatgaaaatggtaatcatatatttaatgtctttcaatatagtatataa
gaataaacagtaattatattaaaattctttaattcatatattcttcattt
tttccatgttttatgctttgtgaaattgtgtgtgatctacctcaaaaata
tgaaaatggtatcacatttaatctttcactgacagtagaattgtacacaa
tcatctttacaaaaggacagaatttaattgttattgttaacatatatgaa
gaaaagatgtcatgaacttgaggttgtgcaaaagaggtcttcatgaagaa
aatgaatggattaaattacattttaatttaaatatatatatatatatatg
tatatatatatatatatagaaagagacacacacacacacacatatattca
caaatatttattgaattcctatggatttaaacttcttcttcttatccctg
ggtgattttaaatgaaggtttactactgaagactggagaaaaatgctaac
tatgtcaaaatagaatcacgtgcagaacaatgaataaactttagttgatc
taaagaactttttcaactgagctggccaaagaacttggagaaagtcaatg
gtggcgaaaagaagttgaaaccctcttggagtttggagggtaagctcata
tatatgggtggtctcttatttcaggaatgtaacgtaatgtggaaaatcaa
ctctcatagaaccttaaaagaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44304269_44305452
seq2: B6Ng01-234B05.b_44_1220

seq1  GAATTCCATATTCTCAATTGACTTTTCCATTACCACATACAATTTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTCTCAATTGACTTTTCCATTACCACATACAATTTTTAAA  50

seq1  ATTCATTTTAATCTTTCTAATGAAAAACAACGACCTACATGGGTTTGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTAATCTTTCTAATGAAAAACAACGACCTACATGGGTTTGATT  100

seq1  TGTATCGTAAATGATCATAGTAAGCTAAGAGACTCTTTTCATAATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCGTAAATGATCATAGTAAGCTAAGAGACTCTTTTCATAATTTTAC  150

seq1  TTATCACTAAGAAGTACTATGTGCACCCAATTATATAAATCTATTCTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCACTAAGAAGTACTATGTGCACCCAATTATATAAATCTATTCTATA  200

seq1  AAATTTAAAGTATCTAAAGATTAGGAAACATGAAGTTAAGAATGTATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGTATCTAAAGATTAGGAAACATGAAGTTAAGAATGTATTCT  250

seq1  ACCTCTAAAAGCAATGATTCGTTTGGAAAATTGAAAGGACTATGTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTAAAAGCAATGATTCGTTTGGAAAATTGAAAGGACTATGTTTTCA  300

seq1  AATGATTTGAAAAAGATTTCCAAACACATGCTTGCAGATTCCAGATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTTGAAAAAGATTTCCAAACACATGCTTGCAGATTCCAGATTTCC  350

seq1  TTTATCCTTCTGCTGTGTTGGGGCATCATTTAATGCAGCCTAAATTTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTTCTGCTGTGTTGGGGCATCATTTAATGCAGCCTAAATTTGCA  400

seq1  TGAGTTAGGCCCTGGAATGTAGTGATGGAAATCCTGTAGAGCCTTGGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGGCCCTGGAATGTAGTGATGGAAATCCTGTAGAGCCTTGGGAA  450

seq1  AAAAAAAAGGTGGCTTATGGGCTTGTGTCATTGAGGTCCTGCTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGGTGGCTTATGGGCTTGTGTCATTGAGGTCCTGCTTTTGTGA  500

seq1  AAGGACAGTATATTTCTCACAGGAACTTGGAGTTATCCTTTGAGAGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGTATATTTCTCACAGGAACTTGGAGTTATCCTTTGAGAGTTCT  550

seq1  CACAAAAGGATCCAGCATGATCCTCTTTCTTGCAGTTTCCTAGATGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAGGATCCAGCATGATCCTCTTTCTTGCAGTTTCCTAGATGTTTT  600

seq1  CTGTGTTTTCCAGTCTGTCATTTGCACATTTGGCCTCCCTTACTGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTCCAGTCTGTCATTTGCACATTTGGCCTCCCTTACTGTGAGT  650

seq1  CAAATAAAGCTTCTTTGTTTATGGCATTAGGCACCATAGATACCTCACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGCTTCTTTGTTTATGGCATTAGGCACCATAGATACCTCACTA  700

seq1  TGATGGTGGAGGCCATCTTTACATGCCATGATTTTCCATTTTCTTCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGGAGGCCATCTTTACATGCCATGATTTTCCATTTTCTTCTGCC  750

seq1  TTTTAGTCTTTTATCTGAATTACAGCAGTATGCTCACATTAGCTAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTCTTTTATCTGAATTACAGCAGTATGCTCACATTAGCTAAAATA  800

seq1  TGACAATTCTAAGACCATTATAAAAACTTTTTTGTACATAGAATATGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTCTAAGACCATTATAAAAACTTTTTTGTACATAGAATATGAAC  850

seq1  ATTTCCCCAAGCTTTCTCAAGAGAATGACAATTTATAAATGCATGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCCAAGCTTTCTCAAGAGAATGACAATTTATAAATGCATGCATTT  900

seq1  GCATTTGCATTACTTTCTGTTGGGAAAGCTCACTGACACTCTTGAACTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGCATTACTTTCTGTTGGGAAAGCTCACTGACACTCTTGAACTGT  950

seq1  CACATGACCTCCCATCATCACTAATCGAAATGAAATGTCAAATCCTTCAT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACATGACCT-CCATCATCACTAATCGAAATGAAATGTCAAATCCTTCAT  999

seq1  AGACTTTCTACTTCTTTTTC-TCTTTCCTTCCTCTGACACTCTTTTTTGT  1049
      |||||||||||||||||||| |||||| |  |||||||||||||||||||
seq2  AGACTTTCTACTTCTTTTTCTTCTTTCGT--CTCTGACACTCTTTTTTGT  1047

seq1  AACTAAGTCTCAGTGTGCCACCCAGACTGGCCTTAAAGTCCTAAAACTCC  1099
       ||||||||||||||||||||||||||||||||| |||| |||||||| |
seq2  -ACTAAGTCTCAGTGTGCCACCCAGACTGGCCTT-AAGT-CTAAAACT-C  1093

seq1  TGCTGCAGCCACAAGTGTTGGGACTCCAGGAATCTGCCACCATACCACAA  1149
      |||||||||||| |||||| ||||| ||||||||||| || |||||||||
seq2  TGCTGCAGCCAC-AGTGTT-GGACTTCAGGAATCTGCAACAATACCACAA  1141

seq1  GTTTCC-TTCTTATCT-AACTTCTCTTTATCTTTTTT  1184
      | |||| | ||||||| |||||| || || |||||||
seq2  GGTTCCATCCTTATCTGAACTTCGCTATA-CTTTTTT  1177


seq1: chr6_44433763_44434957
seq2: B6Ng01-234B05.g_64_1289 (reverse)

seq1  -AAAATCTTTTA--GTTCTAT--GAGTTGAATCT-CACATATACTGTTAC  44
       ||| |||||||  |||||||  ||||||| | | ||||| ||| |||||
seq2  AAAATTCTTTTAAGGTTCTATGAGAGTTGATTTTCCACAT-TAC-GTTAC  48

seq1  ATTTCCTGAAAT---AGACCACC---ATATATGAGCT--ACCTC--AACT  84
      | ||||||||||   ||||||||   |||||||||||   ||||  ||||
seq2  A-TTCCTGAAATAAGAGACCACCCATATATATGAGCTTACCCTCCAAACT  97

seq1  -CAAGA--GTTTCAAACTC-TTTCG-CAC--ATGAC-TTCTCCAAG-TCT  125
       |||||  |||||||  || ||||| |||   |||| ||||||||| |||
seq2  CCAAGAGGGTTTCAACTTCTTTTCGCCACCATTGACTTTCTCCAAGTTCT  147

seq1  TT-GCCAGCTCAGTTG-AAAAGT--CTTAGATC-ACTAAAGTTTA-TCAT  169
      || ||||||||||||| ||||||   ||||||| ||||||||||| ||||
seq2  TTGGCCAGCTCAGTTGAAAAAGTTCTTTAGATCAACTAAAGTTTATTCAT  197

seq1  TG-TCTGCACGTGATTCTA-TTTGACATAGTTAGCATTTTTCTCCAGTCT  217
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTCTGCACGTGATTCTATTTTGACATAGTTAGCATTTTTCTCCAGTCT  247

seq1  TCAGTAGTAAACC-TCATTTAAAATCACCCAGGGATAAGAAGAAGAAGTT  266
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCAGTAGTAAACCTTCATTTAAAATCACCCAGGGATAAGAAGAAGAAGTT  297

seq1  TAAATCCATAGGAATTCAATAAATATTTGTGAATATATGTGTGTGTGTGT  316
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCATAGGAATTCAATAAATATTTGTGAATATATGTGTGTGTGTGT  347

seq1  GTGTCTCTTTCTATATATATATATATATACATATATATATATATATATTT  366
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTTTCTATATATATATATATATACATATATATATATATATATTT  397

seq1  AAATTAAAATGTAATTTAATCCATTCATTTTCTTCATGAAGACCTCTTTT  416
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAATGTAATTTAATCCATTCATTTTCTTCATGAAGACCTCTTTT  447

seq1  GCACAACCTCAAGTTCATGACATCTTTTCTTCATATATGTTAACAATAAC  466
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACCTCAAGTTCATGACATCTTTTCTTCATATATGTTAACAATAAC  497

seq1  AATTAAATTCTGTCCTTTTGTAAAGATGATTGTGTACAATTCTACTGTCA  516
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTCTGTCCTTTTGTAAAGATGATTGTGTACAATTCTACTGTCA  547

seq1  GTGAAAGATTAAATGTGATACCATTTTCATATTTTTGAGGTAGATCACAC  566
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGATTAAATGTGATACCATTTTCATATTTTTGAGGTAGATCACAC  597

seq1  ACAATTTCACAAAGCATAAAACATGGAAAAAATGAAGAATATATGAATTA  616
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCACAAAGCATAAAACATGGAAAAAATGAAGAATATATGAATTA  647

seq1  AAGAATTTTAATATAATTACTGTTTATTCTTATATACTATATTGAAAGAC  666
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTAATATAATTACTGTTTATTCTTATATACTATATTGAAAGAC  697

seq1  ATTAAATATATGATTACCATTTTCATCAGAGTGTGTATGATAAAAAAACA  716
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATATGATTACCATTTTCATCAGAGTGTGTATGATAAAAAAACA  747

seq1  TTATAAAAGACTAGGGGGTTTGTTATTAAAAGTTCTTGAAGCTGAAATTA  766
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGACTAGGGGGTTTGTTATTAAAAGTTCTTGAAGCTGAAATTA  797

seq1  AATCCCACAAAAAATCATATACCAACAGTAATTATAAAAATAGAATTTAA  816
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACAAAAAATCATATACCAACAGTAATTATAAAAATAGAATTTAA  847

seq1  GAGTTTATATAACAATGGAATTAAAGTATATTGAATATTTAAGGGTTGTT  866
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATATAACAATGGAATTAAAGTATATTGAATATTTAAGGGTTGTT  897

seq1  TTAAAACCATGTAATATGTCCTTAAGAAAAATTATAAAAACAATTTCAAA  916
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCATGTAATATGTCCTTAAGAAAAATTATAAAAACAATTTCAAA  947

seq1  TGACTTGAAGAACTAAAACAAAAAACAAACAAACAAACAAACAAAAACAA  966
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGAAGAACTAAAACAAAAAACAAACAAACAAACAAACAAAAACAA  997

seq1  AAAAGCTCTGTGCGCTAGAGATAAGGAAACAGAATTTATAGGTGAGGTCT  1016
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTCTGTGCGCTAGAGATAAGGAAACAGAATTTATAGGTGAGGTCT  1047

seq1  TAGGTGCCTCCTTAATGCAGTAGGTAGTGTGTCAGCCTCATAAAAATGGT  1066
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGCCTCCTTAATGCAGTAGGTAGTGTGTCAGCCTCATAAAAATGGT  1097

seq1  GTTACAGTATTTCCTAAAGTGTTCATGAATTCATTATAAGACCAAAGTAA  1116
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGTATTTCCTAAAGTGTTCATGAATTCATTATAAGACCAAAGTAA  1147

seq1  ATTTCACCCCAAGTCTATGTCTATATGAGTGGATATTTGTGTATGTTGAT  1166
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACCCCAAGTCTATGTCTATATGAGTGGATATTTGTGTATGTTGAT  1197

seq1  TTTTCTCTTGTGAGCTCCTAATTGAATTC  1195
      |||||||||||||||||||||||||||||
seq2  TTTTCTCTTGTGAGCTCCTAATTGAATTC  1226


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