BAC Information

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BAC

Clone NameB6Ng01-234H17
Chromosome6 (Build37)
Map Location 49,236,236 - 49,475,045
singlet/doubletdoublet
Overlap geneCcdc126, D330028D13Rik, Stk31
Upstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a
Downstream geneLOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234H17.bB6Ng01-234H17.g
ACCGA046236GA046237
length1,118693
definitionB6Ng01-234H17.b B6Ng01-234H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,236,236 - 49,237,362)(49,474,353 - 49,475,045)
sequence
ggaattcaatgcctaccagaactacatacacagtgagatcctgtcaaaga
acaaactcttcttacttggagaaacagtaatggtggagttagttggtgca
gctgctggccaggaggacctgaagacccaggccctgaaggctacagaggc
cacggctacagccccaggccaagacagggaatggatctctcagcgggggg
ggggggccacctggtcaagtctctggaggaaattgtcctgtacttcccgc
cagtcaaggagtttgagatcgcaggacatggtggtgcatgcctttaatcc
cagcacttgggaggcagaggcaggcagatttctgagttcgaggccagcct
ggtctacaaagtgagttccaggacagccaaggctatacagagaaaccctg
tccaaaaaaaaaaaaaaaaaaaaaaaagagagagaatttgagatcattgt
ttatttatttattactttgttttgtttgtttgttttcttccctggagcaa
ctctaaaagatgaggttctaaagatctcgctagcgcaaatgcaaacttgg
agtggtcagtggactaggttcaggtcttttgtcctctaggattacatcag
tcaggttgcttctggtgttaagcactgtgaggaaacagcctcttccatcc
aaggggctgtcattttggcgcagctctccattatccttgtgtagagagtc
gctggggaagaagattgttaaaccatgcaaggcgatgggctctgctggtg
tgcttcatctctgccgccagaggccctggcacctctctgactctgtgccc
aagaagctgctgctgaaattgttgacctgctacacatcagcaagaggtgg
acaacaaagatggcttctggaacaactttgccaggccacttttgatgtca
cgtgtaaaacctacagctacctgatctcatccgcccacccacatcccatt
cctcccccacctccggaaagaaagagtcatgcccaccaactcttctctca
tctaacaaacccacatcaaagctatctctcaagaacccagctccagctgg
gtcagctaaaatgtgtggagccacatgcgttgcttgaaatgactcaggac
ctcagaaaagcagtcagg
gaattccattagacttccatcagaaaacagtcaggagaaaatgggatgac
acagcaagggtcctgaaagggggggggggggaatctccaacaaaataatc
aaaataagtgaggaggttgggcattgtggtgcattcctttagtcccagca
cttgggaggcagaggcaggcaagtctctgagattgaggccagcctggtct
atgtggtaagttctagaataggcagggctatacagagaaaccctgtctca
aaaaagagagagagagagagagagagagagacagagagacagagagacag
agagacagagagacagagagaagaaaggaaaggaaaggaaaggaaaggaa
aggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaaaggaggaaag
aaagaagaaaagaaaagaaaagaatagaaaagaaaagaaaagaaaagaaa
agaaaagaaaagaaaagagaagagaagagaagagaagaaaagaaaagaaa
agagaagaaatgaaaagaaaagaaaagaaaagaaaagaggaaaagtagaa
aatcaaacaaagtccaaaaagcaaaaaggagatacagaaggaataaagac
tttttcatcatacccagttctttgaccatcgtaggtaaatgatcactgaa
catatctcaagtctccaaagtacactttaaaatcaatgattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_49236236_49237362
seq2: B6Ng01-234H17.b_47_1162

seq1  GAATTCAATGCCTACCAGAACTACATACACAGTGAGATCCTGTCAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCCTACCAGAACTACATACACAGTGAGATCCTGTCAAAGAA  50

seq1  CAAACTCTTCTTACTTGGAGAAACAGTAATGGTGGAGTTAGTTGGTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTTCTTACTTGGAGAAACAGTAATGGTGGAGTTAGTTGGTGCAG  100

seq1  CTGCTGGCCAGGAGGACCTGAAGACCCAGGCCCTGAAGGCTACAGAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCCAGGAGGACCTGAAGACCCAGGCCCTGAAGGCTACAGAGGCC  150

seq1  ACGGCTACAGCCCCAGGCCAAGACAGGGAATGGATCTCTCAGCGGGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTACAGCCCCAGGCCAAGACAGGGAATGGATCTCTCAGCGGGGGGG  200

seq1  GGGGGCCACCTGGTCAAGTCTCTGGAGGAAATTGTCCTGTACTTCCCGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCACCTGGTCAAGTCTCTGGAGGAAATTGTCCTGTACTTCCCGCC  250

seq1  AGTCAAGGAGTTTGAGATCGCAGGACATGGTGGTGCATGCCTTTAATCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGGAGTTTGAGATCGCAGGACATGGTGGTGCATGCCTTTAATCCC  300

seq1  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTG  350

seq1  GTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAGTGAGTTCCAGGACAGCCAAGGCTATACAGAGAAACCCTGT  400

seq1  CCAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAATTTGAGATCATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAATTTGAGATCATTGTT  450

seq1  TATTTATTTATTACTTTGTTTTGTTTGTTTGTTTTCTTCCCTGGAGCAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTATTACTTTGTTTTGTTTGTTTGTTTTCTTCCCTGGAGCAAC  500

seq1  TCTAAAAGATGAGGTTCTAAAGATCTCGCTAGCGCAGATGCAAACTTGGA  550
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTAAAAGATGAGGTTCTAAAGATCTCGCTAGCGCAAATGCAAACTTGGA  550

seq1  GTGGTCAGTGGACTAGGTTCAGGTCTTTTGTCCTCTAGGATTACATCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCAGTGGACTAGGTTCAGGTCTTTTGTCCTCTAGGATTACATCAGT  600

seq1  CAGGTTGCTTCTGGTGTTAAGCACTGTGAGGAAACAGCCTCTTCCATCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGCTTCTGGTGTTAAGCACTGTGAGGAAACAGCCTCTTCCATCCA  650

seq1  AGGGGCTGTCATTTTGGCGCAGCTCTCCATTATCCTTGTGTAGAGAGTCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGTCATTTTGGCGCAGCTCTCCATTATCCTTGTGTAGAGAGTCG  700

seq1  CTGGGGAAGAAGATTGTTAAACCATGCAAGGCGATGGGCTCTGCTGGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGAAGATTGTTAAACCATGCAAGGCGATGGGCTCTGCTGGTGT  750

seq1  GCTTCATCTCTGCCGCCAGAGGCCCTGGCACCTCTCTGACTCTGTGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCATCTCTGCCGCCAGAGGCCCTGGCACCTCTCTGACTCTGTGCCCA  800

seq1  AGAAGCTGCTGCTGAGATTGTTGA-CTGCTACACATCAGCAAGAGGTGGA  849
      ||||||||||||||| |||||||| |||||||||||||||||||||||||
seq2  AGAAGCTGCTGCTGAAATTGTTGACCTGCTACACATCAGCAAGAGGTGGA  850

seq1  CAACAAAGATGGCTTCTGG-ACAACTTTGCCAAGGCCACTTTTGATGTCA  898
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CAACAAAGATGGCTTCTGGAACAACTTTGCC-AGGCCACTTTTGATGTCA  899

seq1  CGTGTAAAACCTACAGCTACCTGATCTCATCCG-CCACCACAATCCCATT  947
      ||||||||||||||||||||||||||||||||| |||||   ||||||||
seq2  CGTGTAAAACCTACAGCTACCTGATCTCATCCGCCCACCCACATCCCATT  949

seq1  -CTCCCCCACCTCCGGAAAGAAAGAGTTCATGCCCACCAACTCTTCCTCT  996
       ||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  CCTCCCCCACCTCCGGAAAGAAAGAG-TCATGCCCACCAACTCTT-CTCT  997

seq1  CATCTTAACAAAACCCACATCAAAGC-ATCTCTTCAGAGGACCCAGGCTC  1045
      |||| |||| |||||||||||||||| ||||||  |||  ||||| ||||
seq2  CATC-TAAC-AAACCCACATCAAAGCTATCTCTCAAGA--ACCCA-GCTC  1042

seq1  CAGCTGGGTTCAGCCAAAAATGGTTGTGAGCCACCATGTGGTTGCTGAGA  1095
      |||||||| |||| | ||||||  || |||||| ||||  ||||||  ||
seq2  CAGCTGGG-TCAG-CTAAAATGTGTG-GAGCCA-CATG-CGTTGCT-TGA  1086

seq1  ATTGAACTCAGGACCTCTAGAAAAGCAGTCAG  1127
      | || |||||||||||| ||||||||||||||
seq2  AATG-ACTCAGGACCTC-AGAAAAGCAGTCAG  1116

seq1: chr6_49474353_49475045
seq2: B6Ng01-234H17.g_66_758 (reverse)

seq1  ACAATCATTGATTTTAAAGTGTACTTTGGAGACTTGAGATATGTTCAGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCATTGATTTTAAAGTGTACTTTGGAGACTTGAGATATGTTCAGTG  50

seq1  ATCATTTACCTACGATGGTCAAAGAACTGGGTTTGATGAAAAAGTCTTTA  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCATTTACCTACGATGGTCAAAGAACTGGGTATGATGAAAAAGTCTTTA  100

seq1  TTCCTTCTGTATCTCCTTTTTGCTTTTTGGACTTTGTTTGATTTTCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGTATCTCCTTTTTGCTTTTTGGACTTTGTTTGATTTTCTACT  150

seq1  TTTCCTCTTTTCTTTTCTTTTCTTTTCTTTTCATTTCTTCTCTTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTTTCTTTTCTTTTCTTTTCTTTTCATTTCTTCTCTTTTCTTT  200

seq1  TCTTTTCTTCTCTTCTCTTCTCTTCTCTTTTCTTTTCTTTTCTTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTCTCTTCTCTTCTCTTCTCTTTTCTTTTCTTTTCTTTTCTTT  250

seq1  TCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTCTTTCTTTCCT  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTTCTTTTCTATTCTTTTCTTTTCTTTTCTTCTTTCTTTCCT  300

seq1  CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTT  350

seq1  CCTTTCCTTTCCTTTCCTTTCTTCTCTCTGTCTCTCTGTCTCTCTGTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTTTCCTTTCCTTTCTTCTCTCTGTCTCTCTGTCTCTCTGTCTC  400

seq1  TCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTGAGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTCTGTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTGAGACA  450

seq1  GGGTTTCTCTGTATAGCCCTGCCTATTCTAGAACTTACCACATAGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTCTGTATAGCCCTGCCTATTCTAGAACTTACCACATAGACCAG  500

seq1  GCTGGCCTCAATCTCAGAGACTTGCCTGCCTCTGCCTCCCAAGTGCTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCCTCAATCTCAGAGACTTGCCTGCCTCTGCCTCCCAAGTGCTGGG  550

seq1  ACTAAAGGAATGCACCACAATGCCCAACCTCCTCACTTATTTTGATTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGGAATGCACCACAATGCCCAACCTCCTCACTTATTTTGATTATT  600

seq1  TTGTTGGAGATTCCCCCCCCCCCCCTTTCAGGACCCTTGCTGTGTCATCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGAGATTCCCCCCCCCCCCCTTTCAGGACCCTTGCTGTGTCATCC  650

seq1  CATTTTCTCCTGACTGTTTTCTGATGGAAGTCTAATGGAATTC  693
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTCCTGACTGTTTTCTGATGGAAGTCTAATGGAATTC  693