BAC Information

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BAC

Clone NameB6Ng01-234M02
Chromosome3 (Build37)6 (Build37)
Map Location 53,409,856 - 53,410,75874,109,810 - 74,110,346
singlet/doubletsingletsinglet
Overlap geneFrem2
Upstream geneLOC100039762, LOC100039832, Cog6, Lhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3
Downstream genePpia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937, Trpc4, Postn, LOC100039951, LOC434807
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234M02.bB6Ng01-234M02.g
ACCGA046429GA046430
length9071,108
definitionB6Ng01-234M02.b B6Ng01-234M02.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,409,856 - 53,410,758)(74,109,810 - 74,110,346)
sequence
gaattccaggtatgtttagaacttaggagttgattagataacgggtattg
tgaattagagagaagtcggtgtgactcctggggttcagctctagtggcta
aaagggaagcagcagcatttttattctctataacatggagcacaagagat
ggctaaaagcagaagcataatgcaaattgagtttggggtattgagagatc
ctggttcctggacaccagggctgacacacttgctgtggggatggatgttc
ctgctccatctccagttgagatgagtgggaaggttgcagtccctgcagaa
agaggagagactgtgaggtgagctgagcatggagctccagagacagatgg
cagggggtacacatgtagtagggtgcacagtggacactgacgtgagattt
ccagggaacatggaagaaatctgaaggagagtgatgtcctgctcttataa
actcagattctcaggcaaggcattcttcagagccaacattaactaactgc
acactaagaagtgggatctggtgggtcccagtttcctcaccagaaaacag
gctccatgattctgtctacctccatgcattcacatgaggatatggaaact
tcacatggcagccctcgacagtgtctagtccacactgagctcagcaaagt
gactcctgtggagaagtctagacagtgaatgggcaagcagaatggcagtg
gcagcccatgataagtattgttgtataaaagtttctaagataattgaata
ggatattgtgctggctagttttatgtcaactagacacaagctaaagtcat
ccgagaggagggaacctcaaattaagaaaatgtcccacaagatcaggcta
taggcaagcatataggtccttttcttaatcagtggattgaaaatggaagg
gcccagt

gaattcctgatctttccaagacttttatcatgaatgggtgttggacttgt
caaatgctttttctgcatctaacgagatgatcatgtggtttttgtctttg
agtttgtttatataatggattacattgatggattttcgtatattaaacca
tccctgcatccttggaataaaacctacttggtcaggatggatgattgctt
taatgtgttcttggattcggttagcgagaatttttttgagtatttttgca
tcgatattcataagagaaattggtctgaagttctctatctttgttggatc
tttctgtggtttaggtatcagagtaattgtggcttcataaaatgagttgg
atagagtaccttctacttctattttgtgaaatagtttgtgcagaactgga
attagatcttctttgaaggtctgatagaactctgcactaaacccgtctgg
tcctgagcttttttttttttggctgggagactattaataactgcttctat
ttctttaggggatatgggactgtttagatcgttaacttgatcctgattta
actttggtacctggtatctgtccagaaatttgtccatttcgtccaggttt
tccagttttgttgagtatagccttttgtagaaggatctgatggtgttttg
gatttcttcaggatctgttgttatgtctcccttttcttttctggttttgt
taattaggattttgtccctgtgccctctagtgagtctagctaagggttta
tctatcttgttgattttctcaaagaaccaactcctcgtttggttaattct
ttgaatagttcttcttgtttccacttgggtgatttcacccctgagtttga
ttatttcctgcccttcaactcctcttgggtgaattttcttccttttttct
agagcttttagatgtgtttgtcaagcctgctagtgtgtgcctctcctcag
ttccttctggagtcacctcagagctatgagtttcccttttagaaatgctt
catgagtcccataacatttgggtatgtgaggcatcatttcataacctcaa
aagtcttgcaattgcttctcttattccatccttgaccagtatcaatgaga
aagagtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_53409856_53410758
seq2: B6Ng01-234M02.b_44_950 (reverse)

seq1  ACTGGGCCCTTCCA-TTTCAAT-CACTGATTAAGAAAAGGACCTATATGC  48
      |||||||||||||| ||||||| |||||||||||||||||||||||||||
seq2  ACTGGGCCCTTCCATTTTCAATCCACTGATTAAGAAAAGGACCTATATGC  50

seq1  TTGCCTATAGCCTGATCTTGTGGGACATTTTCTTAA-TTGAGGTTCCCTC  97
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGCCTATAGCCTGATCTTGTGGGACATTTTCTTAATTTGAGGTTCCCTC  100

seq1  CTCTCGGATGACTTTAGCTTGTGTCTAGTTGACATAAAACTAGCCAGCAC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCGGATGACTTTAGCTTGTGTCTAGTTGACATAAAACTAGCCAGCAC  150

seq1  AATATCCTATTCAATTATCTTAGAAACTTTTATACAACAATACTTATCAT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCTATTCAATTATCTTAGAAACTTTTATACAACAATACTTATCAT  200

seq1  -GGCTGCCACTGCCATTCTGCTTGCCCATTCACTGTCTAGACTTCTCCAC  246
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCCACTGCCATTCTGCTTGCCCATTCACTGTCTAGACTTCTCCAC  250

seq1  AGGAGTCACTTTGCTGAGCTCAGTGTGGACTAGACACTGTCGAGGGCTGC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCACTTTGCTGAGCTCAGTGTGGACTAGACACTGTCGAGGGCTGC  300

seq1  CATGTGAAGTTTCCATATCCTCATGTGAATGCATGGAGGTAGACAGAATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGAAGTTTCCATATCCTCATGTGAATGCATGGAGGTAGACAGAATC  350

seq1  ATGGAGCCTGTTTTCTGGTGAGGAAACTGGGACCCACCAGATCCCACTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCTGTTTTCTGGTGAGGAAACTGGGACCCACCAGATCCCACTTC  400

seq1  TTAGTGTGCAGTTAGTTAATGTTGGCTCTGAAGAATGCCTTGCCTGAGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGTGCAGTTAGTTAATGTTGGCTCTGAAGAATGCCTTGCCTGAGAA  450

seq1  TCTGAGTTTATAAGAGCAGGACATCACTCTCCTTCAGATTTCTTCCATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTTTATAAGAGCAGGACATCACTCTCCTTCAGATTTCTTCCATGT  500

seq1  TCCCTGGAAATCTCACGTCAGTGTCCACTGTGCACCCTACTACATGTGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAAATCTCACGTCAGTGTCCACTGTGCACCCTACTACATGTGTA  550

seq1  CCCCCTGCCATCTGTCTCTGGAGCTCCATGCTCAGCTCACCTCACAGTCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCATCTGTCTCTGGAGCTCCATGCTCAGCTCACCTCACAGTCT  600

seq1  CTCCTCTTTCTGCAGGGACTGCAACCTTCCCACTCATCTCAACTGGAGAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTCTGCAGGGACTGCAACCTTCCCACTCATCTCAACTGGAGAT  650

seq1  GGAGCAGGAACATCCATCCCCACAGCAAGTGTGTCAGCCCTGGTGTCCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGAACATCCATCCCCACAGCAAGTGTGTCAGCCCTGGTGTCCAG  700

seq1  GAACCAGGATCTCTCAATACCCCAAACTCAATTTGCATTATGCTTCTGCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAGGATCTCTCAATACCCCAAACTCAATTTGCATTATGCTTCTGCT  750

seq1  TTTAGCCATCTCTTGTGCTCCATGTTATAGAGAATAAAAATGCTGCTGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCATCTCTTGTGCTCCATGTTATAGAGAATAAAAATGCTGCTGCT  800

seq1  TCCCTTTTAGCCACTAGAGCTGAACCCCAGGAGTCACACCGACTTCTCTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTAGCCACTAGAGCTGAACCCCAGGAGTCACACCGACTTCTCTC  850

seq1  TAATTCACAATACCCGTTATCTAATCAACTCCTAAGTTCTAAACATACCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCACAATACCCGTTATCTAATCAACTCCTAAGTTCTAAACATACCT  900

seq1  GGAATTC  903
      |||||||
seq2  GGAATTC  907


seq1: chr6_74109810_74110346
seq2: B6Ng01-234M02.g_640_1174 (reverse)

seq1  ACACTC-TTCTCAATGATACCTTGGTCAAGGATGGAATACAGA-AAGAAA  48
      |||||| |||||| ||||||  ||||||||||||||||| ||| ||| ||
seq2  ACACTCTTTCTCATTGATAC--TGGTCAAGGATGGAATA-AGAGAAGCAA  47

seq1  TT-AAAGACTTTTTAGAGTTTAATGAAAATGAAGCCACAGCATACCCAAA  97
      ||  |||||||||  ||| || ||| |||||| ||| || ||||||||||
seq2  TTGCAAGACTTTT--GAGGTT-ATG-AAATGATGCCTCA-CATACCCAAA  92

seq1  -CCTATGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCATAGCTCTG  146
         |||||||| | ||| |||||||||||| |||||||||||||||||||
seq2  TGTTATGGGACTC-ATG-AAGCATTTCTAAAAGGGAAACTCATAGCTCTG  140

seq1  A-CTGCCGCCAAGAAGAAACTGGAGAGA-ACACACACTAGCA-GCTTGAC  193
      |  || | || ||||| |||||  ||||  |||||||||||| |||||||
seq2  AGGTGACTCC-AGAAGGAACTGAGGAGAGGCACACACTAGCAGGCTTGAC  189

seq1  -AACACATCTAAAAGCTCTAGAAAAAAGGAAGCAAATTCACCCAAGAGGA  242
       ||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAACACATCTAAAAGCTCTAGAAAAAAGGAAGAAAATTCACCCAAGAGGA  239

seq1  GTAG-ACGGCAGGAAATTATCAAACTCAGGGGTCAAATCAACCAAGTGGA  291
      || | | |||||||||| ||||||||||||||| |||||| |||||||||
seq2  GTTGAAGGGCAGGAAATAATCAAACTCAGGGGTGAAATCACCCAAGTGGA  289

seq1  AACAAGAAGGACTATTCAAAGAATTAACCAAAGGACGAGTTAGTTCTTTG  341
      ||||||||| |||||||||||||||||||||| || ||||| ||||||||
seq2  AACAAGAAGAACTATTCAAAGAATTAACCAAACGAGGAGTTGGTTCTTTG  339

seq1  AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCAC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTAGAGGGCAC  389

seq1  AGGGACAACATCCTAATTAACAAAATCAGAACTGAAAAGGGAGACATAAC  441
      |||||||| |||||||||||||||| |||||  |||||||||||||||||
seq2  AGGGACAAAATCCTAATTAACAAAACCAGAAAAGAAAAGGGAGACATAAC  439

seq1  AACAGATCCTGACGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  491
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AACAGATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGC  489

seq1  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCT  537
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCT  535


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