BAC Information

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BAC

Clone NameB6Ng01-235O22
Chromosome6 (Build37)
Map Location 113,887,241 - 113,988,924
singlet/doubletdoublet
Overlap geneAtp2b2
Upstream geneSrgap3, EG666387, EG620161, LOC666397, Thumpd3, EG434078, Setd5, Lhfpl4, Mtmr14, Cpne9, Brpf1, Ogg1, Camk1, Tada3l, Arpc4, Ttll3, Rpusd3, Cidec, Jagn1, Il17re, Il17rc, Creld1, Prrt3, Tmem111, Fancd2, 4931417G12Rik, 6720456B07Rik, Vhlh, Irak2, Tatdn2, Ghrl, Sec13
Downstream geneSlc6a11, LOC666491, Slc6a1, Hrh1, Atg7, Vgll4, 1500001M20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-235O22.bB6Ng01-235O22.g
ACCGA047284GA047285
length1,041358
definitionB6Ng01-235O22.b B6Ng01-235O22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,887,241 - 113,888,283)(113,988,562 - 113,988,924)
sequence
gaattcaccccaagtccagcacctggccttttgtaagtccctgggacaag
tgtcacctcaccagtgtcaaagtgaccaggagagtgcatggtgatgacaa
ctttctcacttcacagcagggacatcgaggtccacagggaccagcttgcc
caaggcctcaaacccttcttgacttctgggtgtggcaggcagaagcgaag
cttctctgtgcaaattccacaagcaggaacccactgcacccaatgagtct
gatggacgtgctcatggagttcgcacaagtgggagtgggagaaggctctt
cagttaggtcttgagtggccaatgcccatgtgtagaggcttcctacccat
ggttcctgggggcggggcaccactgggtagtgataggaacttgaagaggt
ggggcttactgggaggccttaggtcaatggggctgaacccttgagggagg
ccacggaaccctgggttcttcctctctttgcttctggtgaggagttgagc
tggggtttttttgtttgttttttgtttttcctgccaagttctcccaacag
aatgcactgcacctccacaccgcacaggccccaagggaatgggacaactt
agttatgctggaccatctgagaatgtgagcccaaatgacccacttctctc
tcaggtgtttggctggtggattctggtaagcacgctctaaggaggatggg
ggctctgagagctggaaacggcttttctccagtttccactagaagcagcc
ttgtcctgatggtggcttgcaacaaccttggcctggacccactgatgctg
agccactcggtttgtggtcccttccttcagctaccacaagaaatagatgt
gcaacgaccagaagtgtgtagaccaccatctttcagctcctagaactaaa
ggaacaggagtttgggagacaaagtcaatgtctcgaggcctttaagcaag
tgaacacagactggaaaaactctggggttgggggggagtgatcgttgcaa
tcactgcttagatgatcctgctgtctgcaaaggatggatgt
tgtcttgcctctgtcccctgctctccagctacgtcagccatgagccaagc
agaggactggggctcactggggccttagagttagaaaatctgaataaaaa
tatctgggaggtaggagagaatctttctttaaaaaaagaaaaaaagaaag
gggagagcagaggtagacatgtgcgcgtgcgcttgcgcgtgcgtgtgtgt
gtgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgattaacctgctgagc
catccagtcctgcagttcttatcaactgtagaggcccactgttttgttta
aatttttatccaaatatgtagctgatcctgagcaggggtaggggagaaat
gggcggta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_113887241_113888283
seq2: B6Ng01-235O22.b_48_1088

seq1  GAATTCACCCCAAGTCCAGCACCTGGCCTTTTGTAAGTCCCTGGGACAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCAAGTCCAGCACCTGGCCTTTTGTAAGTCCCTGGGACAAG  50

seq1  TGTCACCTCACCAGTGTCAAAGTGACCAGGAGAGTGCATGGTGATGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTCACCAGTGTCAAAGTGACCAGGAGAGTGCATGGTGATGACAA  100

seq1  CTTTCTCACTTCACAGCAGGGACATCGAGGTCCACAGGGACCAGCTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCACTTCACAGCAGGGACATCGAGGTCCACAGGGACCAGCTTGCC  150

seq1  CAAGGCCTCAAACCCTTCTTGACTTCTGGGTGTGGCAGGCAGAAGCGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCTCAAACCCTTCTTGACTTCTGGGTGTGGCAGGCAGAAGCGAAG  200

seq1  CTTCTCTGTGCAAATTCCACAAGCAGGAACCCACTGCACCCAATGAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGCAAATTCCACAAGCAGGAACCCACTGCACCCAATGAGTCT  250

seq1  GATGGACGTGCTCATGGAGTTCGCACAAGTGGGAGTGGGAGAAGGCTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACGTGCTCATGGAGTTCGCACAAGTGGGAGTGGGAGAAGGCTCTT  300

seq1  CAGTTAGGTCTTGAGTGGCCAATGCCCATGTGTAGAGGCTTCCTACCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGGTCTTGAGTGGCCAATGCCCATGTGTAGAGGCTTCCTACCCAT  350

seq1  GGTTCCTGGGGGCGGGGCACCACTGGGTAGTGATAGGAACTTGAAGAGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGGGGGCGGGGCACCACTGGGTAGTGATAGGAACTTGAAGAGGT  400

seq1  GGGGCTTACTGGGAGGCCTTAGGTCAATGGGGCTGAACCCTTGAGGGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTACTGGGAGGCCTTAGGTCAATGGGGCTGAACCCTTGAGGGAGG  450

seq1  CCACGGAACCCTGGGTTCTTCCTCTCTTTGCTTCTGGTGAGGAGTTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGGAACCCTGGGTTCTTCCTCTCTTTGCTTCTGGTGAGGAGTTGAGC  500

seq1  TGGGGTTTTTTTGTTTGTTTTTTGTTTTTCCTGCCAAGTTCTCCCAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTTTTTTGTTTGTTTTTTGTTTTTCCTGCCAAGTTCTCCCAACAG  550

seq1  AATGCACTGCACCTCCACACCGCACAGGCCCCAAGGGAATGGGACAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACTGCACCTCCACACCGCACAGGCCCCAAGGGAATGGGACAACTT  600

seq1  AGTTATGCTGGACCATCTGAGAATGTGAGCCCAAATGACCCACTTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGCTGGACCATCTGAGAATGTGAGCCCAAATGACCCACTTCTCTC  650

seq1  TCAGGTGTTTGGCTGGTGGATTCTGGTAAGCACGCTCTAAGGAGGATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGTTTGGCTGGTGGATTCTGGTAAGCACGCTCTAAGGAGGATGGG  700

seq1  GGCTCTGAGAGCTGGAAACGGCTTTTCTCCAGTTTCCACTAGAAGCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGAGAGCTGGAAACGGCTTTTCTCCAGTTTCCACTAGAAGCAGCC  750

seq1  TTGTCCTGATGGTGGCTTGCAACAACCTTGGCCTGGACCCACTGATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGATGGTGGCTTGCAACAACCTTGGCCTGGACCCACTGATGCTG  800

seq1  AGCCACTCGGTTTGTGGTCCCTTCCTTCAGCTACCACAAGAAATAGATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACTCGGTTTGTGGTCCCTTCCTTCAGCTACCACAAGAAATAGATGT  850

seq1  GCAACGACCAGAAGTGTGTAGACCACCATCTTTCAGCTCCTAGAACTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACGACCAGAAGTGTGTAGACCACCATCTTTCAGCTCCTAGAACTAAA  900

seq1  GGAACAGGAGTTTGGGAGACAAAGTCAATGTCTCGAGGCCTTAAAGCAAG  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGAACAGGAGTTTGGGAGACAAAGTCAATGTCTCGAGGCCTTTAAGCAAG  950

seq1  TG-ACACAGACTGGAAAAAACCTCTGGGGTTGGGGGGAGGTGACCGTTGC  999
      || ||||||||||||||||  ||||||||||||||||  |||| ||||||
seq2  TGAACACAGACTGGAAAAA--CTCTGGGGTTGGGGGGGAGTGATCGTTGC  998

seq1  ATCAACTGCTAAGATGATCTGCCTGCCTGCAAAGGAGTGGATGT  1043
      |   |||||| ||||||||   ||| |||||||||| |||||||
seq2  AATCACTGCTTAGATGATCCTGCTGTCTGCAAAGGA-TGGATGT  1041

seq1: chr6_113988562_113988924
seq2: B6Ng01-235O22.g_68_431 (reverse)

seq1  TACCTCCCATTTCTCCCCTACCCCTGCACAGGATCAGCTACATATTTGGA  50
      |||| |||||||||||||||||||||| ||||||||||||||||||||||
seq2  TACCGCCCATTTCTCCCCTACCCCTGCTCAGGATCAGCTACATATTTGGA  50

seq1  T-CCAATTTAAACAAAACAGTGGGCCTCTACAGTTGATAAGAACTGCAGG  99
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTAAACAAAACAGTGGGCCTCTACAGTTGATAAGAACTGCAGG  100

seq1  ACTGGATGGCTCAGCAGGTTAATCACACACACACACATGCACACACACAC  149
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTGGATGGCTCAGCAGGTTAATCACACACACACACACGCACACACACAC  150

seq1  ACACACACACACACACGCACGCGCAAGCGCACGCGCACATGTCTACCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACGCACGCGCAAGCGCACGCGCACATGTCTACCTCT  200

seq1  GCTCTCCCCTTTCTTTTTTTCTTTTTTTAAAGAAAGATTCTCTCCTACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCCCTTTCTTTTTTTCTTTTTTTAAAGAAAGATTCTCTCCTACCT  250

seq1  CCCAGATATTTTTATTCAGATTTTCTAACTCTAAGGCCCCAGTGAGCCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGATATTTTTATTCAGATTTTCTAACTCTAAGGCCCCAGTGAGCCCC  300

seq1  AGTCCTCTGCTTGGCTCATGGCTGACGTAGCTGGAGAGCAGGGGACAGAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGCTTGGCTCATGGCTGACGTAGCTGGAGAGCAGGGGACAGAG  350

seq1  GCAAGACAGAATTC  363
      ||||||||||||||
seq2  GCAAGACAGAATTC  364