BAC Information

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BAC

Clone NameB6Ng01-236B06
Chromosome6 (Build37)
Map Location 81,989,794 - 82,106,954
singlet/doubletdoublet
Overlap geneTmem166
Upstream geneLOC100042991, LOC232143, 1700009C05Rik, AW146020, Mrpl19
Downstream geneEG622198, Tacr1, Pole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236B06.bB6Ng01-236B06.g
ACCGA047386GA047387
length1,1811,124
definitionB6Ng01-236B06.b B6Ng01-236B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,989,794 - 81,990,993)(82,105,838 - 82,106,954)
sequence
gaattcagcatatattagcatctcttagtagcaataataaacacatccaa
agccaaatggggtcagagtattccaatgtcttttcttcagcctaggggat
aaatggactggatccaaatgttctccttaaaccagtctaaggccaaatgg
tcctggagaaggtcttggccacctaccggaaggaagctgtggttggtcca
tccctttatcccacatactgagcatcagttctgtgtgtggtccggatcca
acctgtgatctcaagcatgcccaggtggctgcaaacacagcatgacgtca
tgaatcctttgtgctgcctctccatctgcctgctgatacagctgcccagt
tatggggagcgtgccgagtgcctgggtatggaatttggagttggttaagt
gtgtgtatcttttacagataagaaaaactgaagtctggagaggaggcctt
attcaagttcagggagtagtttagtggccgtccaaagctagaactggttg
ctcaaggcaccgatgaagcaagacccttcctgccagaccagtagcttcta
taagagaagacaactggtctgtgtttacatcaggaccctgagattgtttt
ctttgagggaaagcactgcatttcaaggttaaataaagcaagcactgttt
ggccaagtgtagactatggctctcagccctggctctgtcagatcaacttt
cagaaacacacttgggggaccctctttagacaaattcagtgatcgtatga
gtggacctgggtttcttctcatttttaaacctaatagcttaaagtccagc
cagggctctgtggtctgatatattcagtccacccatgccaccaatggtct
tgaaagcaacattttcaaatagcatctgaatccgggcattgggtcagaat
gtagactctcagtgagtcagtccagaggggcaggagaacagcagctgttt
ctagagtatgcttctgatagcagtttctcgaggacacctgggattctgat
gaccccttttggtcctgataatccatccaagttctcacatctgagccctt
ggtttcagttgccctgatccaagccacaccttctgggctggcaagcgatc
tctctctgttccctcatcctcctgtcttcaaggctgactgtcagacctgc
gtctgcagtctagactgtcctctaccattaa
gaattctgtcgcctaccgtgtgtccttgtgtgggaggacaatctgtttaa
agctaccatgttttccttggcactagttatcaaacaaaatccaatataaa
caaccacattgaggaaagactaacctgggctcacagtttgaaaggctcct
gtccaaggtctcttggggtccttgcactctggtggaacatcatgtccatg
agggtgtgtggcagaagataactttttactccttgatggagaagaagcag
agtatggagaagcttggggatcaggtatacccttcagaagctttccccta
atgacctgtcccgtttttaaaaatttccagaaacttcccaaatagcacaa
atgggtgggagtattaaacacaatgagcctatgagtagactatttcatat
gcaagctctaatattcctgtgttgcttacctgacacaacctaggactacc
tgggaagagattctcagttgacagactgtgtagggcaagttggcttaggt
gtttccctctgggattgtcttgattgttaactgaggtgggacaatgaatg
caggcatcactgtttcatgagctggtcctgagctagatacgaagggttga
gtataagcaagcaagcactctgggctttggccctctgctgccaactgtgg
gtgtgcccagtgcttgagtttctgcactggcttctctgaaatcctggaat
gggacttggaattataatccaaaattcttccccttggttgctttttggtc
agggtattttatgacagcaacaaaatgaaactgcaagaagtctgaagaac
tgttaaagaaaacctaaggagagtctgtaatcccatgcctgggggtgttt
gaaggcttttaaacacacaaaaaaaaagtgtcatatttttctgggaggtc
ttctggtaagactctttctatgtgagtctgagcccgccatacagtgcact
tgggggttttggtcagatatccatcccgtttaatagctgcaagagtgctt
gggcccttgggaaactgcagagccctagggttaataaatggcagagctga
caattcttctgtcactttctacttgacatcatagctgtgtggctggtgca
gaaaagtgatgcaattttccaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_81989794_81990993
seq2: B6Ng01-236B06.b_44_1224

seq1  GAATTCAGCATATATTAGCATCTCTTAGTAGCAATAATAAACACATCCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATATATTAGCATCTCTTAGTAGCAATAATAAACACATCCAA  50

seq1  AGCCAAATGGGGTCAGAGTATTCCAATGTCTTTTCTTCAGCCTAGGGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAATGGGGTCAGAGTATTCCAATGTCTTTTCTTCAGCCTAGGGGAT  100

seq1  AAATGGACTGGATCCAAATGTTCTCCTTAAACCAGTCTAAGGCCAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGACTGGATCCAAATGTTCTCCTTAAACCAGTCTAAGGCCAAATGG  150

seq1  TCCTGGAGAAGGTCTTGGCCACCTACCGGAAGGAAGCTGTGGTTGGTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGAGAAGGTCTTGGCCACCTACCGGAAGGAAGCTGTGGTTGGTCCA  200

seq1  TCCCTTTATCCCACATACTGAGCATCAGTTCTGTGTGTGGTCCGGATCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTATCCCACATACTGAGCATCAGTTCTGTGTGTGGTCCGGATCCA  250

seq1  ACCTGTGATCTCAAGCATGCCCAGGTGGCTGCAAACACAGCATGACGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGATCTCAAGCATGCCCAGGTGGCTGCAAACACAGCATGACGTCA  300

seq1  TGAATCCTTTGTGCTGCCTCTCCATCTGCCTGCTGATACAGCTGCCCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCTTTGTGCTGCCTCTCCATCTGCCTGCTGATACAGCTGCCCAGT  350

seq1  TATGGGGAGCGTGCCGAGTGCCTGGGTATGGAATTTGGAGTTGGTTAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGAGCGTGCCGAGTGCCTGGGTATGGAATTTGGAGTTGGTTAAGT  400

seq1  GTGTGTATCTTTTACAGATAAGAAAAACTGAAGTCTGGAGAGGAGGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATCTTTTACAGATAAGAAAAACTGAAGTCTGGAGAGGAGGCCTT  450

seq1  ATTCAAGTTCAGGGAGTAGTTTAGTGGCCGTCCAAAGCTAGAACTGGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGTTCAGGGAGTAGTTTAGTGGCCGTCCAAAGCTAGAACTGGTTG  500

seq1  CTCAAGGCACCGATGAAGCAAGACCCTTCCTGCCAGACCAGTAGCTTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGGCACCGATGAAGCAAGACCCTTCCTGCCAGACCAGTAGCTTCTA  550

seq1  TAAGAGAAGACAACTGGTCTGTGTTTACATCAGGACCCTGAGATTGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAGACAACTGGTCTGTGTTTACATCAGGACCCTGAGATTGTTTT  600

seq1  CTTTGAGGGAAAGCACTGCATTTCAAGGTTAAATAAAGCAAGCACTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAGGGAAAGCACTGCATTTCAAGGTTAAATAAAGCAAGCACTGTTT  650

seq1  GGCCAAGTGTAGACTATGGCTCTCAGCCCTGGCTCTGTCAGATCAACTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTGTAGACTATGGCTCTCAGCCCTGGCTCTGTCAGATCAACTTT  700

seq1  CAGAAACACACTTGGGGGACCCTCTTTAGACAAATTCAGTGATCGTATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACACACTTGGGGGACCCTCTTTAGACAAATTCAGTGATCGTATGA  750

seq1  GTGGACCTGGGTTTCTTCTCATTTTTAAACCTAATAGCTTAAAGTCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCTGGGTTTCTTCTCATTTTTAAACCTAATAGCTTAAAGTCCAGC  800

seq1  CAGGGCTCTGTGGTCTGATATATTCAGTCCA-CCATGCCACCAATGGTCT  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAGGGCTCTGTGGTCTGATATATTCAGTCCACCCATGCCACCAATGGTCT  850

seq1  TGAAAGCAACATTTTCAAATAGCATCTGAATCCGGGCATTGGGTCAGAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAACATTTTCAAATAGCATCTGAATCCGGGCATTGGGTCAGAAT  900

seq1  GTAGACTCTCAGTGAGTCAGGTCCAGAGGGGCAGGAGAACAGCAGCTGTT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTAGACTCTCAGTGAGTCA-GTCCAGAGGGGCAGGAGAACAGCAGCTGTT  949

seq1  TCTAGAGTATGCTTCTGATAGCAG-TTCTCGAGGACACCTGGGATTCTGA  998
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTAGAGTATGCTTCTGATAGCAGTTTCTCGAGGACACCTGGGATTCTGA  999

seq1  TGACCCCTTTTGGTCCCTGGTTATTCCATCCAATTTCTCCACCATCTGAG  1048
      ||||||||||||||||   | || ||||||||| |||||   ||||||||
seq2  TGACCCCTTTTGGTCC--TGATAATCCATCCAAGTTCTC--ACATCTGAG  1045

seq1  CCCTTGGTTTTCAGTTGCCCTGGTTCCCAGCAACACCCTTTCTTGGGCTG  1098
      ||||||| ||||||||||||| | ||| ||| |||||  ||| |||||||
seq2  CCCTTGG-TTTCAGTTGCCCT-GATCCAAGCCACACC--TTC-TGGGCTG  1090

seq1  GCAGGGCGATCTCTTCTCTGTTCCCCTCCTTCTTCCTGTCTTTCACAGGG  1148
      |||  |||||||| |||||||||||   | || |||||||||   || ||
seq2  GCA-AGCGATCTC-TCTCTGTTCCC--TCATCCTCCTGTCTT---CAAGG  1133

seq1  CTGGGCTGCACAG-CCTGCCTGTCTGCCTGTCTAGACTGTCCTCTACCAT  1197
      || | |||  ||| |||||  ||||| | |||||||||||||||||||||
seq2  CT-GACTG-TCAGACCTGC--GTCTG-CAGTCTAGACTGTCCTCTACCAT  1178

seq1  TAA  1200
      |||
seq2  TAA  1181

seq1: chr6_82105838_82106954
seq2: B6Ng01-236B06.g_66_1189 (reverse)

seq1  AATTTGAAAATTGCATCCACTTTTCTTGCA-CAGCCACA-GGCTATGATG  48
      |||| ||||||||||| |||||||| |||| ||||||||  |||||||||
seq2  AATTGGAAAATTGCAT-CACTTTTC-TGCACCAGCCACACAGCTATGATG  48

seq1  TCAAGTAGGAAGTGACAGAAGA--TGTCAGCTCTGCCATTTATT-ACCCT  95
      |||||||| |||||||||||||  |||||||||||||||||||| |||||
seq2  TCAAGTAGAAAGTGACAGAAGAATTGTCAGCTCTGCCATTTATTAACCCT  98

seq1  A-GGCTCTGCAGTTTCCCAGGGCCCCAAGCACTCTTGCAGCTATTAAACG  144
      | ||||||||||||||||| || |||||||||||||||||||||||||||
seq2  AGGGCTCTGCAGTTTCCCAAGGGCCCAAGCACTCTTGCAGCTATTAAACG  148

seq1  GGATGGATATCTGACCAAAA-CCCCAAGTGCACTGTATGGCGGGCTCAGA  193
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGATGGATATCTGACCAAAACCCCCAAGTGCACTGTATGGCGGGCTCAGA  198

seq1  CTCACATAG-AAGAGTCTTACCAGAAGACCTCCCAGAAAAATATGACACT  242
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATAGAAAGAGTCTTACCAGAAGACCTCCCAGAAAAATATGACACT  248

seq1  TTTTTTTGTGTGT-TTTAAAAGCCTTCAAACACCCCCAGGCATGGGATTA  291
      ||||||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTTTTT-TGTGTGTTTAAAAGCCTTCAAACACCCCCAGGCATGGGATTA  297

seq1  CAGACTCTCCTTAGGTTTTCTTTAACAGTTCTTCAGACTTCTTGCAGTTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTCCTTAGGTTTTCTTTAACAGTTCTTCAGACTTCTTGCAGTTT  347

seq1  CATTTTGTTGCTGTCATAAAATACCCTGACC-AAAAGCAACCAAGGGGAA  390
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATTTTGTTGCTGTCATAAAATACCCTGACCAAAAAGCAACCAAGGGGAA  397

seq1  GAATTTTGGATTATAATTCCAAGTCCCATTCCAGGATTTCAGAGAAGCCA  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGGATTATAATTCCAAGTCCCATTCCAGGATTTCAGAGAAGCCA  447

seq1  GTGCAGAAACTCAAGCACTGGGCACACCCACAGTTGGCAGCAGAGGGCCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAAACTCAAGCACTGGGCACACCCACAGTTGGCAGCAGAGGGCCA  497

seq1  AAGCCCAGAGTGCTTGCTTGCTTATACTCAACCCTTCGTATCTAGCTCAG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGAGTGCTTGCTTGCTTATACTCAACCCTTCGTATCTAGCTCAG  547

seq1  GACCAGCTCATGAAACAGTGATGCCTGCATTCATTGTCCCACCTCAGTTA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCTCATGAAACAGTGATGCCTGCATTCATTGTCCCACCTCAGTTA  597

seq1  ACAATCAAGACAATCCCAGAGGGAAACACCTAAGCCAACTTGCCCTACAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAAGACAATCCCAGAGGGAAACACCTAAGCCAACTTGCCCTACAC  647

seq1  AGTCTGTCAACTGAGAATCTCTTCCCAGGTAGTCCTAGGTTGTGTCAGGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTCAACTGAGAATCTCTTCCCAGGTAGTCCTAGGTTGTGTCAGGT  697

seq1  AAGCAACACAGGAATATTAGAGCTTGCATATGAAATAGTCTACTCATAGG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACACAGGAATATTAGAGCTTGCATATGAAATAGTCTACTCATAGG  747

seq1  CTCATTGTGTTTAATACTCCCACCCATTTGTGCTATTTGGGAAGTTTCTG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGTGTTTAATACTCCCACCCATTTGTGCTATTTGGGAAGTTTCTG  797

seq1  GAAATTTTTAAAAACGGGACAGGTCATTAGGGGAAAGCTTCTGAAGGGTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTAAAAACGGGACAGGTCATTAGGGGAAAGCTTCTGAAGGGTA  847

seq1  TACCTGATCCCCAAGCTTCTCCATACTCTGCTTCTTCTCCATCAAGGAGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGATCCCCAAGCTTCTCCATACTCTGCTTCTTCTCCATCAAGGAGT  897

seq1  AAAAAGTTATCTTCTGCCACACACCCTCATGGACATGATGTTCCACCAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTATCTTCTGCCACACACCCTCATGGACATGATGTTCCACCAGA  947

seq1  GTGCAAGGACCCCAAGAGACCTTGGACAGGAGCCTTTCAAACTGTGAGCC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGACCCCAAGAGACCTTGGACAGGAGCCTTTCAAACTGTGAGCC  997

seq1  CAGGTTAGTCTTTCCTCAATGTGGTTGTTTATATTGGATTTTGTTTGATA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTAGTCTTTCCTCAATGTGGTTGTTTATATTGGATTTTGTTTGATA  1047

seq1  ACTAGTGCCAAGGAAAACATGGTAGCTTTAAACAGATTGTCCTCCCACAC  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGCCAAGGAAAACATGGTAGCTTTAAACAGATTGTCCTCCCACAC  1097

seq1  AAGGACACACGGTAGGCGACAGAATTC  1117
      |||||||||||||||||||||||||||
seq2  AAGGACACACGGTAGGCGACAGAATTC  1124