BAC Information

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BAC

Clone NameB6Ng01-236F23
Chromosome6 (Build37)
Map Location 142,269,897 - 142,401,920
singlet/doubletdoublet
Overlap geneSlco1a5, BC027061, Recql, Golt1b, B230216G23Rik, Gys2
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Iapp
Downstream geneLdhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236F23.bB6Ng01-236F23.g
ACCGA047607GA047608
length8901,102
definitionB6Ng01-236F23.b B6Ng01-236F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,269,897 - 142,270,773)(142,400,831 - 142,401,920)
sequence
gaattcaaaggacaaaagactggcgggttctaaaaagaaattttaaagtt
gcaaagttgggaaatattaatctgagggaaaaaaatctttaaaaagatat
ttttaaagggggcacaaaagcagcaaaaatcaaacagataaaaagcatag
tgggaaagtgtgggtctacttcataataatccgataatctccaggcttaa
aaacatcacaaatagaggaaaaatgatggcatggggaagtatccgaagca
tggagagaaagcagtttgtgactctaatgtgaggcaaaatataactccta
taaaagggaaataaccaaagtgggttttcacaggggtggttaggtgcaga
gacaattcacccaaaacaatctacgtacgccctggcttcaggcagtaaat
gaaggaaatcaagagctgcccaatacccagtggcagggtgtggagtggtg
ggtctgtgaacagcaggacaccaggcctgtgtgaattcactttgggggac
ccacctgctgtcacctacagaccaagcacgatttatatatgcacactgac
acagtaagttttccataaaacttaaatgaagatagcaacaaaccctgact
atcagatggtcttaaaagtcagaatgaaagaggatctatgtctatggtta
catgaaatgacacgcacatgcaatgacacacacatgcaatgacacacaca
tgcaatgacacacacatgcaatgacaaacattcttgtacatttgtttgtg
aatacagaaaaaatatgaaagataaagcaacaactgactcttgtgctact
gttttgttttgtttgtttgtccttaagttaacgttttttcttttttaatt
tttagcaatgaatgcccgttgaagactggggggggggggg
gaattcagcagggaaacacaggccaggagggactgctgtagaagatggct
tcatgctgtagttatcatttaaagtgagtagtttatactccagtcctatc
acatggaagtatagaacaaatgactcaagagtgtagcagttgagacactt
cgagtcggggacatggctcagtggttgagtgcacgtgcacattcagagct
gggttcctagctcccacgtggaggctcacagtctcctgtcactccagttc
cacggcatccaatgccctcttctgatctcctcaagttctgtgctcatgtg
cacacacttaatttaaaacaaacaaacaaaacagataatgagaccatcta
ggctttcctgaattctgtattattgtatccctagtgcttttgatatatag
atttttttcctcctttagcaagatgttataccaattatcctgaaagattt
cctaaaactgcaaggtaagaaagtgattagtaataatctcatctgccaaa
agagtaagtgaaaaggattatctttgtataatcttttctatatttcctgg
aatatatccataaagcatgctttataaataggttcataactgtatcaaac
atgttccatgtttggggtcattattaataaatccattcatatagttatta
aatgttcactttacttgtagatgaagtaaacaaaacccatttttattaag
ttagagagaaaagatgattataatactcagagaaattaaaatacccaata
tatagtaatttctttgatggtgtgaaggctgccacctgcggtgaacctca
cgtcttatagatttcctggatggactgtcaagttcagaaggcagaggcca
cccagctgaaggaaagatgaccgaaactcaggacatcgtcttctcacttc
agataataaggccatgcatatacacacagtttttactggagttaagttga
tgctttcactccaaagctgctttggtcctatgttgttgccctggtgagaa
atgctaggcctctggcattctgaaggaaagaatcaagaagcagagaattt
tcagattgtttaaaaattataccagtttaaatattaatttttggtttcct
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_142269897_142270773
seq2: B6Ng01-236F23.b_50_939

seq1  GAATTCAAAGGACAAAAGACTGGCGGGTTCTAAAAAGAAATTTTAAAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGACAAAAGACTGGCGGGTTCTAAAAAGAAATTTTAAAGTT  50

seq1  GCAAAGTTGGGAAATATTAATCTGAGGGAAAAAAATCTTTAAAAAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTTGGGAAATATTAATCTGAGGGAAAAAAATCTTTAAAAAGATAT  100

seq1  TTTTAAAGGGGGCACAAAAGCAGCAAAAATCAAACAGATAAAAAGCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGGGGGCACAAAAGCAGCAAAAATCAAACAGATAAAAAGCATAG  150

seq1  TGGGAAAGTGTGGGTCTACTTCATAATAATCCGATAATCTCCAGGCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGTGTGGGTCTACTTCATAATAATCCGATAATCTCCAGGCTTAA  200

seq1  AAACATCACAAATAGAGGAAAAATGATGGCATGGGGAAGTATCCGAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCACAAATAGAGGAAAAATGATGGCATGGGGAAGTATCCGAAGCA  250

seq1  TGGAGAGAAAGCAGTTTGTGACTCTAATGTGAGGCAAAATATAACTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGAAAGCAGTTTGTGACTCTAATGTGAGGCAAAATATAACTCCTA  300

seq1  TAAAAGGGAAATAACCAAAGTGGGTTTTCACAGGGGTGGTTAGGTGCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGAAATAACCAAAGTGGGTTTTCACAGGGGTGGTTAGGTGCAGA  350

seq1  GACAATTCACCCAAAACAATCTACGTACGCCCTGGCTTCAGGCAGTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTCACCCAAAACAATCTACGTACGCCCTGGCTTCAGGCAGTAAAT  400

seq1  GAAGGAAATCAAGAGCTGCCCAATACCCAGTGGCAGGGTGTGGAGTGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAATCAAGAGCTGCCCAATACCCAGTGGCAGGGTGTGGAGTGGTG  450

seq1  GGTCTGTGAACAGCAGGACACCAGGCCTGTGTGAATTCACTTTGGGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGAACAGCAGGACACCAGGCCTGTGTGAATTCACTTTGGGGGAC  500

seq1  CCACCTGCTGTCACCTACAGACCAAGCACGATTTATATATGCACACTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTGTCACCTACAGACCAAGCACGATTTATATATGCACACTGAC  550

seq1  ACAGTAAGTTTTCCATAAAACTTAAATGAAGATAGCAACAAACCCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAGTTTTCCATAAAACTTAAATGAAGATAGCAACAAACCCTGACT  600

seq1  ATCAGATGGTCTTAAAAGTCAGAATGAAAGAGGATCTATGTCTATGGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATGGTCTTAAAAGTCAGAATGAAAGAGGATCTATGTCTATGGTTA  650

seq1  CATGAAATGACACGCACATGCAATGACACACACATGCAATGACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGACACGCACATGCAATGACACACACATGCAATGACACACACA  700

seq1  TGCAATGACACACACATGCAATGACAAACATTCTTGTACA-TTGTTTGTG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCAATGACACACACATGCAATGACAAACATTCTTGTACATTTGTTTGTG  750

seq1  AATACAG-AAAAATATG-AAGAT-AAGCAACAACTGACTC-TGTGCTACT  795
      ||||||| ||||||||| ||||| |||||||||||||||| |||||||||
seq2  AATACAGAAAAAATATGAAAGATAAAGCAACAACTGACTCTTGTGCTACT  800

seq1  GTTT--GTTTGTTTGTTTGTCTTTAAG-TAACG-TTTTTCTTTTT--AAT  839
      ||||   |||||||||||||| ||||| ||||| |||||||||||  | |
seq2  GTTTTGTTTTGTTTGTTTGTCCTTAAGTTAACGTTTTTTCTTTTTTAATT  850

seq1  TTTAGC-ATGAATGCCCG-TGAAGACTGGGGGGGGGGGGG  877
      |||||| ||||||||||| |||||||||||||||||||||
seq2  TTTAGCAATGAATGCCCGTTGAAGACTGGGGGGGGGGGGG  890

seq1: chr6_142400831_142401920
seq2: B6Ng01-236F23.g_69_1170 (reverse)

seq1  TTAGGAA--CAAAAATT-ATATTTAAACTGGTAT-ATTTTTAAAC-ATCT  45
      |||||||  |||||||| |||||||||||||||| |||||||||| ||||
seq2  TTAGGAAACCAAAAATTAATATTTAAACTGGTATAATTTTTAAACAATCT  50

seq1  GAAA--TCTCTGCTTTCTTG-TTCTTTCCTTCAG-ATGCCAGA-GCCTAG  90
      ||||  ||||||| |||||| ||||||||||||| |||||||| ||||||
seq2  GAAAATTCTCTGC-TTCTTGATTCTTTCCTTCAGAATGCCAGAGGCCTAG  99

seq1  CATTTCTCA-CAGGGCAACAACATA-GACCAAAGCAGCTTTGGAGTGAAA  138
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  CATTTCTCACCAGGGCAACAACATAGGACCAAAGCAGCTTTGGAGTGAAA  149

seq1  GCATCAAC-TAACT-CAGTTAAAACTGTGTGTATATGCATGGCCTTATTA  186
      |||||||| ||||| |||| ||||||||||||||||||||||||||||||
seq2  GCATCAACTTAACTCCAGTAAAAACTGTGTGTATATGCATGGCCTTATTA  199

seq1  TCTGAAGTGAGAAGACGATGTCCTGAGTTTCGGTCATCTTTCCTTCAGCT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGAGAAGACGATGTCCTGAGTTTCGGTCATCTTTCCTTCAGCT  249

seq1  GGGTGGCCTCTGCCTTCTGAAACTTGACAGTCCATCCAGGAAATCTATAA  286
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGGTGGCCTCTGCCTTCTG-AACTTGACAGTCCATCCAGGAAATCTATAA  298

seq1  GACGTGAGGTTCACCGCAGGTGGCAGCCTTCACACCATCAAAGAAATTAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGAGGTTCACCGCAGGTGGCAGCCTTCACACCATCAAAGAAATTAC  348

seq1  TATATATTGGGTATTTTAATTTCTCTGAGTATTATAATCATCTTTTCTCT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTGGGTATTTTAATTTCTCTGAGTATTATAATCATCTTTTCTCT  398

seq1  CTAACTTAATAAAAATGGGTTTTGTTTACTTCATCTACAAGTAAAGTGAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTAATAAAAATGGGTTTTGTTTACTTCATCTACAAGTAAAGTGAA  448

seq1  CATTTAATAACTATATGAATGGATTTATTAATAATGACCCCAAACATGGA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAATAACTATATGAATGGATTTATTAATAATGACCCCAAACATGGA  498

seq1  ACATGTTTGATACAGTTATGAACCTATTTATAAAGCATGCTTTATGGATA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTGATACAGTTATGAACCTATTTATAAAGCATGCTTTATGGATA  548

seq1  TATTCCAGGAAATATAGAAAAGATTATACAAAGATAATCCTTTTCACTTA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGGAAATATAGAAAAGATTATACAAAGATAATCCTTTTCACTTA  598

seq1  CTCTTTTGGCAGATGAGATTATTACTAATCACTTTCTTACCTTGCAGTTT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGGCAGATGAGATTATTACTAATCACTTTCTTACCTTGCAGTTT  648

seq1  TAGGAAATCTTTCAGGATAATTGGTATAACATCTTGCTAAAGGAGGAAAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATCTTTCAGGATAATTGGTATAACATCTTGCTAAAGGAGGAAAA  698

seq1  AAATCTATATATCAAAAGCACTAGGGATACAATAATACAGAATTCAGGAA  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATATATCAAAAGCACTAGGGATACAATAATACAGAATTCAGGAA  748

seq1  AGCCTAGATGGTCTCATTATCTGTTTTGTTTGTTTGTTTTAAATTAAGTG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGATGGTCTCATTATCTGTTTTGTTTGTTTGTTTTAAATTAAGTG  798

seq1  TGTGCACATGAGCACAGAACTTGAGGAGATCAGAAGAGGGCATTGGATGC  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACATGAGCACAGAACTTGAGGAGATCAGAAGAGGGCATTGGATGC  848

seq1  CGTGGAACTGGAGTGACAGGAGACTGTGAGCCTCCACGTGGGAGCTAGGA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGAACTGGAGTGACAGGAGACTGTGAGCCTCCACGTGGGAGCTAGGA  898

seq1  ACCCAGCTCTGAATGTGCACGTGCACTCAACCACTGAGCCATGTCCCCGA  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCTCTGAATGTGCACGTGCACTCAACCACTGAGCCATGTCCCCGA  948

seq1  CTCGAAGTGTCTCAACTGCTACACTCTTGAGTCATTTGTTCTATACTTCC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAAGTGTCTCAACTGCTACACTCTTGAGTCATTTGTTCTATACTTCC  998

seq1  ATGTGATAGGACTGGAGTATAAACTACTCACTTTAAATGATAACTACAGC  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATAGGACTGGAGTATAAACTACTCACTTTAAATGATAACTACAGC  1048

seq1  ATGAAGCCATCTTCTACAGCAGTCCCTCCTGGCCTGTGTTTCCCTGCTGA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCCATCTTCTACAGCAGTCCCTCCTGGCCTGTGTTTCCCTGCTGA  1098

seq1  ATTC  1090
      ||||
seq2  ATTC  1102