BAC Information

Click to search

BAC

Clone NameB6Ng01-238F16
Chromosome6 (Build37)6 (Build37)
Map Location 132,810,492 - 132,811,620132,763,576 - 132,764,317
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC639802, EG114600, Prb1, LOC631126, LOC100043878, Prpmp5, EG667929, EG381818, Prh1, Prp2, A630073D07Rik, Tas2r120, Tas2r121, Tas2r122, Tas2r115, Tas2r124, Tas2r102, Tas2r136, Tas2r145-ps3, Tas2r117, Tas2r111-ps2, Tas2r123, Tas2r116
Downstream geneTas2r110, Tas2r113, Tas2r142-ps5, Tas2r125, Tas2r146-ps1, Tas2r129, Tas2r131, Tas2r109, EG667992, LOC100043634, Tas2r140, LOC668002, Tas2r141-ps4, 2700089E24Rik, LOC630618, 5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238F16.bB6Ng01-238F16.g
ACCGA049071GA049072
length1,127892
definitionB6Ng01-238F16.b B6Ng01-238F16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(132,810,492 - 132,811,620)(132,763,576 - 132,764,317)
sequence
gaattcaatttacataagagactagacaagacaaatccttgcaaaacagt
aaagaaagtggtctttatttgcatgctaacaaattagattttggcttgag
tttgaaaatcagtaactataaattaggcacaatatgaaggaaatagtata
tccctagttgagatttcacatggttagtgatacaatttgcatttgtattt
tttgttaatatctccaaaacattgtaaacaatacttactttgtcagagga
aaaaaagaataatgtctacattctaccatataataaaattcacactaatc
agactggctcacattggttttttcaaagaatggaatacacaggtgttcca
catagtccatctaggttgacaaaatggacaagcaaagatggatgtctata
ttccatgtggtggcagaatctaaatacatctacattgctttaagtctcag
catgtttaagataaccaaattatacaatctctcatatttctcctgaaata
aaaagacaaataacattcctttgcttctgttgggaattcagtgcttttgt
ttccttaagttgccaaggtaacattattagacaataaaacttacatgaac
aaattcaggtaaataaatatgtatgaaaaatgtatcatggaagaccaaac
cgaggtacattttcaacttttcaaatacaactatttattttaagaaactc
ttcatggtattacacccctgcttcattttcctttgtttactgcctttgtg
aacaaacatcttagtaagttgaggctgcatggctcagtgtccctaggagt
gatcaccacgtttcacaaaaagtctttgaaaaccaaaatatcttttgttt
ctctctgtgatctgctttgtgtttcttcatagaaagattgaaagcttttg
gtgggatttcaattttatattcaagaccaccctgattgacaggctactgg
taccatttcatctttcaagccattcctttgtcctgacttagaaaagagat
gccttcacagttctattttcttagctctttgacggacaggcatttgagga
aaggaccttatctattgaccagttagaccaaataatgtcaaataaaaata
aataaccagattctccacagagactcc
gaattccaacaaatgcttgctgacaggagcctgatatagctgtctccaga
gaggctctgtcattgcctgcacgcgtttaatcccagcacttggaatgcag
aggcaggtggatttctgagtttgaggacagcctggtctacaaagtgagct
ccaggacagtcagggctatgcagagaaacactattttgaaaaaacaaaca
aacaaacaaacaaacaaacaaacaaacgaagtgaatgcccacagacatcc
attagatgaagcacagggtctccattgaaggagttagagaaaatacccaa
gcagctgactaggtttgcagccccctagaaagaacaatatgaactaacca
gtaatccgacagctccatgggagtaaaccaccaatcaaagaaaacacatg
gatggactatgactctagctgcatatgtaacagagggtggcctatttgat
catcaatgggaggatatgtcctttgtcctgagaaggttctattcctcagt
ataggggaatgcctgggctaggaagcaggagtgggtgggttggggaacac
agggaggggggcaaagatagttttcggaggggaaactaggaaaggggcta
acatttgaaatgtaaataaagaaaatatctaataaaaaagattagtttat
tgaccaataagaatctatattggttcttgttttcatatgttatgaagtga
ctgtttcctgacgttgcaaacttaatggcctgagggtattacagacagaa
ttcagaatcagtgtctctatttcctgaaaagttttctttttgtctttcta
aatggtattaaaagattcttcacatactgacacttggtagagatctttaa
aggtagaaaatatttttcgttttcttccagaaatcaatacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_132810492_132811620
seq2: B6Ng01-238F16.b_48_1174

seq1  GAATTCAATTTACATAAGAGACTAGACAAGACAAATCCTTGCAAAACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTTACATAAGAGACTAGACAAGACAAATCCTTGCAAAACAGT  50

seq1  AAAGAAAGTGGTCTTTATTTGCATGCTAACAAATTAGATTTTGGCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGTGGTCTTTATTTGCATGCTAACAAATTAGATTTTGGCTTGAG  100

seq1  TTTGAAAATCAGTAACTATAAATTAGGCACAATATGAAGGAAATAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAATCAGTAACTATAAATTAGGCACAATATGAAGGAAATAGTATA  150

seq1  TCCCTAGTTGAGATTTCACATGGTTAGTGATACAATTTGCATTTGTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGTTGAGATTTCACATGGTTAGTGATACAATTTGCATTTGTATTT  200

seq1  TTTGTTAATATCTCCAAAACATTGTAAACAATACTTACTTTGTCAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAATATCTCCAAAACATTGTAAACAATACTTACTTTGTCAGAGGA  250

seq1  AAAAAAGAATAATGTCTACATTCTACCATATAATAAAATTCACACTAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATAATGTCTACATTCTACCATATAATAAAATTCACACTAATC  300

seq1  AGACTGGCTCACATTGGTTTTTTCAAAGAATGGAATACACAGGTGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGGCTCACATTGGTTTTTTCAAAGAATGGAATACACAGGTGTTCCA  350

seq1  CATAGTCCATCTAGGTTGACAAAATGGACAAGCAAAGATGGATGTCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTCCATCTAGGTTGACAAAATGGACAAGCAAAGATGGATGTCTATA  400

seq1  TTCCATGTGGTGGCAGAATCTAAATACATCTACATTGCTTTAAGTCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGTGGTGGCAGAATCTAAATACATCTACATTGCTTTAAGTCTCAG  450

seq1  CATGTTTAAGATAACCAAATTATACAATCTCTCATATTTCTCCTGAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTAAGATAACCAAATTATACAATCTCTCATATTTCTCCTGAAATA  500

seq1  AAAAGACAAATAACATTCCTTTGCTTCTGTTGGGAATTCAGTGCTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAATAACATTCCTTTGCTTCTGTTGGGAATTCAGTGCTTTTGT  550

seq1  TTCCTTAAGTTGCCAAGGTAACATTATTAGACAATAAAACTTACATGAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGTTGCCAAGGTAACATTATTAGACAATAAAACTTACATGAAC  600

seq1  AAATTCAGGTAAATAAATATGTATGAAAAATGTATCATGGAAGACCAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAGGTAAATAAATATGTATGAAAAATGTATCATGGAAGACCAAAC  650

seq1  CGAGGTACATTTTCAACTTTTCAAATACAACTATTTATTTTAAGAAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTACATTTTCAACTTTTCAAATACAACTATTTATTTTAAGAAACTC  700

seq1  TTCATGGTATTACACCCCTGCTTCATTTTCCTTTGTTTACTGCCTTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGGTATTACACCCCTGCTTCATTTTCCTTTGTTTACTGCCTTTGTG  750

seq1  AACAAACATCTTAGTAAGTTGAGGCTGCATGGCTCAGTGTCCCTAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATCTTAGTAAGTTGAGGCTGCATGGCTCAGTGTCCCTAGGAGT  800

seq1  GATCACCACGTTTCACAAAAAGTCTTTGAAAACCAAAATATCTTTTGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCACGTTTCACAAAAAGTCTTTGAAAACCAAAATATCTTTTGTTT  850

seq1  CTCTCTGTGATCTGCTTTGTGTTTCTTCATAG-AAGATTG-AAGC-TTTG  897
      |||||||||||||||||||||||||||||||| ||||||| |||| ||||
seq2  CTCTCTGTGATCTGCTTTGTGTTTCTTCATAGAAAGATTGAAAGCTTTTG  900

seq1  GTGGGATTTCAA-TTTATATTCAAGACCACCCTGATTGACAGGCTACTGG  946
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGGATTTCAATTTTATATTCAAGACCACCCTGATTGACAGGCTACTGG  950

seq1  TACCATTTCATC-TTCAAGCCATTCCTTTGTCCTGACTTAGGAAAAGAGA  995
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  TACCATTTCATCTTTCAAGCCATTCCTTTGTCCTGACTTA-GAAAAGAGA  999

seq1  TGCCTTCACAGTTCTA-TTTCTTAGCTCTTTGACAGACAAGGCCATTGAG  1044
      |||||||||||||||| ||||||||||||||||| ||| ||||  |||||
seq2  TGCCTTCACAGTTCTATTTTCTTAGCTCTTTGACGGAC-AGGCATTTGAG  1048

seq1  GAAAGGACC-TATCTATTTGACCAGTAAGACAAAAT-ATGTCAAAAAAAA  1092
      ||||||||| |||||| ||||||||| |||| |||| |||||       |
seq2  GAAAGGACCTTATCTA-TTGACCAGTTAGACCAAATAATGTC-------A  1090

seq1  AAAAAAAAAAAAAAACAAGA-TCTCCACAAGAGACTCC  1129
      || ||||| ||| ||| ||| ||||||| |||||||||
seq2  AATAAAAATAAATAACCAGATTCTCCAC-AGAGACTCC  1127

seq1: chr6_132763576_132764317
seq2: B6Ng01-238F16.g_214_958

seq1  GCTCCAGGACAGTCAGGGCTATGCAGAGAAACACTATTTTGAAAAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||    ||
seq2  GCTCCAGGACAGTCAGGGCTATGCAGAGAAACACTATTTTGAAA----AA  46

seq1  ACAAACAAACAAACAAACAAACAAACAAACAAACGAAGTGAATGCCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAACAAACAAACAAACGAAGTGAATGCCCACA  96

seq1  GACATCCATTAGATGAAGCACAGGGTCTCCATTGAAGGAGTTAGAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCCATTAGATGAAGCACAGGGTCTCCATTGAAGGAGTTAGAGAAAA  146

seq1  TACCCAAGCAGCTGACTAGGTTTGCAGCCCCCTAGAAAGAACAATATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAAGCAGCTGACTAGGTTTGCAGCCCCCTAGAAAGAACAATATGAA  196

seq1  CTAACCAGTAATCCGACAGCTCCATGGGAGTAAACCACCAATCAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCAGTAATCCGACAGCTCCATGGGAGTAAACCACCAATCAAAGAAA  246

seq1  ACACATGGATGGACTATGACTCTAGCTGCATATGTAACAGAGGGTGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGATGGACTATGACTCTAGCTGCATATGTAACAGAGGGTGGCCT  296

seq1  ATTTGATCATCAATGGGAGGATATGTCCTTTGTCCTGAGAAGGTTCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCATCAATGGGAGGATATGTCCTTTGTCCTGAGAAGGTTCTATT  346

seq1  CCTCAGTATAGGGGAATGCCTGGGCTAGGAAGCAGGAGTGGGTGGGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTATAGGGGAATGCCTGGGCTAGGAAGCAGGAGTGGGTGGGTTGG  396

seq1  GGAACACAGGGAGGGGGGCAAAGATAGTTTTCGGAGGGGAAACTAGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGGGAGGGGGGCAAAGATAGTTTTCGGAGGGGAAACTAGGAAA  446

seq1  GGGGCTAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAACATTTGAAATGTAAATAAAGAAAATATCTAATAAAAAAGATT  496

seq1  AGTTTATTGACCAATAAGAATCTATA-TGGTTCTTGTTTTCATATGTTAT  549
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTTTATTGACCAATAAGAATCTATATTGGTTCTTGTTTTCATATGTTAT  546

seq1  GAAGTGACTGTTTCCTGACGTTGCAAACTTAATGGCCTGAGGGTATTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACTGTTTCCTGACGTTGCAAACTTAATGGCCTGAGGGTATTACA  596

seq1  GACAGAATTCAGAATCAGTGTCTCTATTTCCTGAAAAGTTTTCTTTTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTCAGAATCAGTGTCTCTATTTCCTGAAAAGTTTTCTTTTTGT  646

seq1  CTTTCTAAAATGTATTAAAAGA-TCTTCACATACTGACACTT-GTAGAGA  697
      |||||||||  ||||||||||| ||||||||||||||||||| |||||||
seq2  CTTTCTAAATGGTATTAAAAGATTCTTCACATACTGACACTTGGTAGAGA  696

seq1  TCTTT-AAGGTAGAGAATA-TTTTCG-TTTCATCCAGAAATC-ATACTA  742
      ||||| |||||||| |||| |||||| |||| |||||||||| ||||||
seq2  TCTTTAAAGGTAGAAAATATTTTTCGTTTTCTTCCAGAAATCAATACTA  745