BAC Information

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BAC

Clone NameB6Ng01-238M20
Chromosome6 (Build37)
Map Location 134,075,420 - 134,076,566
singlet/doubletsinglet
Overlap geneEtv6
Upstream gene5530400C23Rik, EG545884, EG626372, LOC100043649, LOC100043653, EG545886, LOC622962, Kap, LOC100043655, LOC100043656, LOC668063
Downstream geneLOC100043660, Bcl2l14, Lrp6, Mansc1, Loh12cr1, LOC100043884, Dusp16, Crebl2, Gpr19, Cdkn1b, 1190002F15Rik, Apold1, Ddx47, Gprc5a, Gprc5d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238M20.bB6Ng01-238M20.g
ACCGA049402GA049403
length1,1361,177
definitionB6Ng01-238M20.b B6Ng01-238M20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ggaattctgcccccccaaaaaaatcaaagcaaaacaaaataaatactcta
taacagggttttcaacctgtggttttccacccctctgacaaacttctatc
cccaaaatatttacattactattcttaatagtagcaaaattaccgttatg
aagaagcaataaaaataattttacagtttgaggtcacaacgtgtggaact
gtattaaagggtcactgtactagaatccccccaccccacaacacaaccac
ctcacaagcaatcatgaatgtatgaatgtcccaatcctgtgtttccactt
tcagaaaacattctctatgtacacttgtcaaaatcaacatttacagaggg
ttgtttttgtttttgtttttgtttgactcttagacacaaaattcacaatt
agaagaggtgggagtttgggtttctggtgatttatttattgaaagagatc
ttgctgataaactattattactatggagacactggcatttttaccatgct
gaacaataagcaattaaactgaaaataaaatataaagatacatgtgtggt
gtgtgatagcactagttagcagattatttagcagcttaaaataacaggga
aataagcatactcttatagttttctaaagaccaatcatctattttacatg
ggatttcatgccttcattagaaatgttcgtattcaatggtgtatgaaaaa
aaaagcttgaattcatatgtcccttgggaattcaggatcagctaacaact
taggaaatacacattttgatcagatattctgaatcttggctaacaggtca
gccttacccagaggaagttaaaaagcaaacaaacagaacaacccagtatt
ggagcaaatcagagcccatgggaatgtgagccagacattaatattaaccc
tcctcgggtgactctgatgtgcttagttatgactgagaatcacggcctga
aatcaagacagaaagagtcagtcagtgaagacctacagtaagcaatctgc
ttctacagactttagaagccatatagtctgtatgcaatgtcctccctctg
agtctatgcactgtcctacttttcccgtaactcaggtgacagtgtaacaa
caggttgtctgagacataccatgaatcctgcacatg
gaattcctgatctttccaagacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtgtttattgtcttt
gagtttgtttatatactggattacgttgatggattttcctatattaaacc
atccctgcatccctagaataaaacctacttggtcaggatggatgattgct
ttaatatgttcttggattcggttagtgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggaatcagagtaatagtggctgcataaaatgagttg
ggtagagtaccttcttcttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaacactgcactaaacccatctg
gtcctgggctctttttggctgggagactattaatgactgcttctatttct
ttaggggatatggggctatttagatcgttaacttgatcctgatttaactt
tggtacctggtatctgtctagaaatttgttcattttgtccaggttatcca
gttttgttaagtatagccttttgtataaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggatgttgtccctgtgacctctagtgagtctagctaaagggtttatct
atcttgttgattttctcaaagaaccaactcctcgtttggttatttctttg
aatagttcttcttgtttccacttggttgatttcgcccctgagtttgatta
tttcctgctgtctactcctcgtaggtgaattttcttcctttttttctaga
gcatttagatgtgttgtcaagctgctagtgtgtgctctctctagtttctt
ttttggaggcactcagagcatgagtttccctcttagaaatgttttcaatg
tgtccatagtttcgtatgtgtggccttcattttcataacttcaaaaagtc
tttatttctttcttaatcttccttgaccagtatcatgagagagtgttgtc
agttccacggtgatgtgccttccatataagtgctatggaagactagccca
tataggaccaagtggtgcgtgcatcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_134075420_134076566
seq2: B6Ng01-238M20.b_47_1181 (reverse)

seq1  CATGTGCAG--ATCATGTGATGTCCTTCAGACAACCTG-TGTTACCACTG  47
      |||||||||   |||||  |||||  |||||||||||| ||||| |||| 
seq2  CATGTGCAGGATTCATGGTATGTC--TCAGACAACCTGTTGTTA-CACT-  46

seq1  GTCACCTGAGTTACGGGAAAAGGTAGGACAGTGGCAATAGACTCAGGAGG  97
      ||||||||||||||||||||| |||||||||||   ||||||||| ||||
seq2  GTCACCTGAGTTACGGGAAAA-GTAGGACAGTG--CATAGACTCA-GAGG  92

seq1  GAGGACAATTGGCATACAGGACTAATATGGCTTCTAAAGTCTGTTAGGAA  147
      |||||||  | ||||||| |||| ||||||||||||||||||||   |||
seq2  GAGGACA--TTGCATACA-GACT-ATATGGCTTCTAAAGTCTGT--AGAA  136

seq1  GCAGAATTGCTTACTGTAGGTCTTCACTGACTTGACTCTTTCTGTCTTGA  197
      |||| |||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCAG-ATTGCTTACTGTAGGTCTTCACTGAC-TGACTCTTTCTGTCTTGA  184

seq1  TTTCAGGCCGTGATTCTCAGTCATAACTAAGCACATCAGAGTCA-CCGAG  246
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTCAGGCCGTGATTCTCAGTCATAACTAAGCACATCAGAGTCACCCGAG  234

seq1  GAGGGTTAATATTAATGTCTGGCTCACATTCCCATGGGCTCTGATTTGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTAATATTAATGTCTGGCTCACATTCCCATGGGCTCTGATTTGCT  284

seq1  CCAATACTGGGTTGTTCTGTTTGTTTGCTTTTTAACTTCCTCTGGGTAAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATACTGGGTTGTTCTGTTTGTTTGCTTTTTAACTTCCTCTGGGTAAG  334

seq1  GCTGACCTGTTAGCCAAGATTCAGAATATCTGATCAAAATGTGTATTTCC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACCTGTTAGCCAAGATTCAGAATATCTGATCAAAATGTGTATTTCC  384

seq1  TAAGTTGTTAGCTGATCCTGAATTCCCAAGGGACATATGAATTCAAGCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTGTTAGCTGATCCTGAATTCCCAAGGGACATATGAATTCAAGCTT  434

seq1  TTTTTTTCATACACCATTGAATACGAACATTTCTAATGAAGGCATGAAAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCATACACCATTGAATACGAACATTTCTAATGAAGGCATGAAAT  484

seq1  CCCATGTAAAATAGATGATTGGTCTTTAGAAAACTATAAGAGTATGCTTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTAAAATAGATGATTGGTCTTTAGAAAACTATAAGAGTATGCTTA  534

seq1  TTTCCCTGTTATTTTAAGCTGCTAAATAATCTGCTAACTAGTGCTATCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTTATTTTAAGCTGCTAAATAATCTGCTAACTAGTGCTATCAC  584

seq1  ACACCACACATGTATCTTTATATTTTATTTTCAGTTTAATTGCTTATTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACACATGTATCTTTATATTTTATTTTCAGTTTAATTGCTTATTGT  634

seq1  TCAGCATGGTAAAAATGCCAGTGTCTCCATAGTAATAATAGTTTATCAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATGGTAAAAATGCCAGTGTCTCCATAGTAATAATAGTTTATCAGC  684

seq1  AAGATCTCTTTCAATAAATAAATCACCAGAAACCCAAACTCCCACCTCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCTTTCAATAAATAAATCACCAGAAACCCAAACTCCCACCTCTT  734

seq1  CTAATTGTGAATTTTGTGTCTAAGAGTCAAACAAAAACAAAAACAAAAAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTGTGAATTTTGTGTCTAAGAGTCAAACAAAAACAAAAACAAAAAC  784

seq1  AACCCTCTGTAAATGTTGATTTTGACAAGTGTACATAGAGAATGTTTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTCTGTAAATGTTGATTTTGACAAGTGTACATAGAGAATGTTTTCT  834

seq1  GAAAGTGGAAACACAGGATTGGGACATTCATACATTCATGATTGCTTGTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGAAACACAGGATTGGGACATTCATACATTCATGATTGCTTGTG  884

seq1  AGGTGGTTGTGTTGTGGGGTGGGGGGATTCTAGTACAGTGACCCTTTAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGTGTTGTGGGGTGGGGGGATTCTAGTACAGTGACCCTTTAAT  934

seq1  ACAGTTCCACACGTTGTGACCTCAAACTGTAAAATTATTTTTATTGCTTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCACACGTTGTGACCTCAAACTGTAAAATTATTTTTATTGCTTC  984

seq1  TTCATAACGGTAATTTTGCTACTATTAAGAATAGTAATGTAAATATTTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAACGGTAATTTTGCTACTATTAAGAATAGTAATGTAAATATTTTG  1034

seq1  GGGATAGAAGTTTGTCAGAGGGGTGGAAAACCACAGGTTGAAAACCCTGT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGAAGTTTGTCAGAGGGGTGGAAAACCACAGGTTGAAAACCCTGT  1084

seq1  TATAGAGTATTTATTTTGTTTTGCTTTGATTTTTTTGGGGGGGCAGAATT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGTATTTATTTTGTTTTGCTTTGATTTTTTTGGGGGGGCAGAATT  1134

seq1  C  1147
      |
seq2  C  1135