BAC Information

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BAC

Clone NameB6Ng01-242F13
Chromosome6 (Build37)
Map Location 34,562,897 - 34,685,583
singlet/doubletdoublet
Overlap geneLOC100039184, Cald1
Upstream geneExoc4, Lrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
Downstream geneAgbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik, Mtpn, LOC100039312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242F13.bB6Ng01-242F13.g
ACCGA052016GA052017
length8461,043
definitionB6Ng01-242F13.b B6Ng01-242F13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,684,738 - 34,685,583)(34,562,897 - 34,563,919)
sequence
gaattcacagtgactctacaggcctgtgaagagttggttggacctcaagg
tcagctctgatagttctgaacctcacggggcctccaccttcctgtgagtc
acttgagaaaagtgatttcaggtttgtcagtgagatgccgagccggagag
acgttcccagcttcccacagctgcacacttcccatgcaggccccacctag
taacaggagacccgagcctcatggcctccagaaggacaactcttaggcaa
gtattattattattaattattattactattattcattatagtttctgcaa
atgtcattatcttaatgaggttcttacaacagggtctgacttacagagtt
agaagtttctgtgggttaagaatatgctcatcgatcgactatttggaggc
aacatgactcaggcacacccagtgcccaagctccaggggttttctttcag
gacatgatctgtgagcagcttctcaatgcacatcccatgagcactgtgcg
ctgctcacttgccctcagtgagtctgaggccacgctgtgatcaagagtaa
aagccctgagccctgaaaagagtcctctgtgctcagtagacttaatgctc
ctttgaaacttacgagtttgctgaaacattccaagctcttaaatataatt
gtgtttacatgtggtgttggcaaaatatcttggtttcattgaatgcatat
aaagacaaattctgaagtttttccttggaatccttgagaggaagggaatt
aaaagctacaatgtaggaaaataaaacccaggaaaataaaagtacttgca
gtcagaatatggcaagtcagtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcagtttggactgaaattccacatctgaggtttccagcagctatcc
cacatgtgacagcttcagcagactcctttgtctggggggccggggggggg
ggggctcctactccaggatcaggcttctcttctttctacctgtttaaaaa
aatgtgaaaaagacgcaacgcatgcttagtacagagaactagaaaacaca
gagggttacactgtcactgctgatactaagatcatttcctctatatacct
acgttttggtttttttagttggcacgtgacttgcatgtgtttacagccta
ccatatgctgattcaaagcacataattcaatgcatacacaacattaaggt
tctggttttactcttgtctttaacaatcagtggtgacaggtgtgggccag
agaggccgctcggtggacaaggcacttgccatgtgtgggtgaagagcaga
gtttgcatccccagtacccacataaatgcaaggcggctgtgccatgtgcc
ttctgccaggaattccagtgctcaggatggggagactgggatcatccagg
gcaagccaggctagcaagaatgagcaagcttcaggttcagtgaagggagg
tcaagagagaccttagatgtcaacttcaggcttctatgtgcagttgtacc
tctgcgcatgggcacccgaacaaccgtgtgcttacacacaagggaaaggg
cacatggacactgcaaacacacaccatattagcaatcacctttggaagaa
actctgctgcaaagggacagtttaaggcaggttagcatctgattcacgat
gtttccctaacacaaacatcagtgtgtatcttcctcttaaagctttgtat
gtgtccaatgtacacagtgaacaacaataaaatcttcaagagtcttgctg
cacctcagtctttcatctgcatattgaagtttctgacacatgaaggccac
ataatgcgaatttatttcctccacacttgcaggtgctgtgatttttaata
attctttatgggcggaatttcaattcgggttttttttaaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34684738_34685583
seq2: B6Ng01-242F13.b_48_893 (reverse)

seq1  CACACACACACACACACACACACACACTGACTTGCCATATTCTGACTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACTGACTTGCCATATTCTGACTGCA  50

seq1  AGTACTTTTATTTTCCTGGGTTTTATTTTCCTACATTGTAGCTTTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTTATTTTCCTGGGTTTTATTTTCCTACATTGTAGCTTTTAATT  100

seq1  CCCTTCCTCTCAAGGATTCCAAGGAAAAACTTCAGAATTTGTCTTTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCTCAAGGATTCCAAGGAAAAACTTCAGAATTTGTCTTTATAT  150

seq1  GCATTCAATGAAACCAAGATATTTTGCCAACACCACATGTAAACACAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCAATGAAACCAAGATATTTTGCCAACACCACATGTAAACACAATT  200

seq1  ATATTTAAGAGCTTGGAATGTTTCAGCAAACTCGTAAGTTTCAAAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAAGAGCTTGGAATGTTTCAGCAAACTCGTAAGTTTCAAAGGAGC  250

seq1  ATTAAGTCTACTGAGCACAGAGGACTCTTTTCAGGGCTCAGGGCTTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTCTACTGAGCACAGAGGACTCTTTTCAGGGCTCAGGGCTTTTAC  300

seq1  TCTTGATCACAGCGTGGCCTCAGACTCACTGAGGGCAAGTGAGCAGCGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCACAGCGTGGCCTCAGACTCACTGAGGGCAAGTGAGCAGCGCA  350

seq1  CAGTGCTCATGGGATGTGCATTGAGAAGCTGCTCACAGATCATGTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCATGGGATGTGCATTGAGAAGCTGCTCACAGATCATGTCCTGA  400

seq1  AAGAAAACCCCTGGAGCTTGGGCACTGGGTGTGCCTGAGTCATGTTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACCCCTGGAGCTTGGGCACTGGGTGTGCCTGAGTCATGTTGCCT  450

seq1  CCAAATAGTCGATCGATGAGCATATTCTTAACCCACAGAAACTTCTAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATAGTCGATCGATGAGCATATTCTTAACCCACAGAAACTTCTAACT  500

seq1  CTGTAAGTCAGACCCTGTTGTAAGAACCTCATTAAGATAATGACATTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTCAGACCCTGTTGTAAGAACCTCATTAAGATAATGACATTTGC  550

seq1  AGAAACTATAATGAATAATAGTAATAATAATTAATAATAATAATACTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTATAATGAATAATAGTAATAATAATTAATAATAATAATACTTGC  600

seq1  CTAAGAGTTGTCCTTCTGGAGGCCATGAGGCTCGGGTCTCCTGTTACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAGTTGTCCTTCTGGAGGCCATGAGGCTCGGGTCTCCTGTTACTAG  650

seq1  GTGGGGCCTGCATGGGAAGTGTGCAGCTGTGGGAAGCTGGGAACGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCCTGCATGGGAAGTGTGCAGCTGTGGGAAGCTGGGAACGTCTCT  700

seq1  CCGGCTCGGCATCTCACTGACAAACCTGAAATCACTTTTCTCAAGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCTCGGCATCTCACTGACAAACCTGAAATCACTTTTCTCAAGTGACT  750

seq1  CACAGGAAGGTGGAGGCCCCGTGAGGTTCAGAACTATCAGAGCTGACCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAAGGTGGAGGCCCCGTGAGGTTCAGAACTATCAGAGCTGACCTT  800

seq1  GAGGTCCAACCAACTCTTCACAGGCCTGTAGAGTCACTGTGAATTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCAACCAACTCTTCACAGGCCTGTAGAGTCACTGTGAATTC  846

seq1: chr6_34562897_34563919
seq2: B6Ng01-242F13.g_68_1110

seq1  GAATTCAGTTTGGACTGAAATTCCACATCTGAGGTTTCCAGCAGCTATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTGGACTGAAATTCCACATCTGAGGTTTCCAGCAGCTATCC  50

seq1  CACATGTGACAGCTTCAGCAGACTCCTTTGTCTGGGGGGCCGGGGGGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTGACAGCTTCAGCAGACTCCTTTGTCTGGGGGGCCGGGGGGGGG  100

seq1  GGGGCTCCTACTCCAGGATCAGGCTTCTCTTCTTTCTACCTGTTTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCCTACTCCAGGATCAGGCTTCTCTTCTTTCTACCTGTTTAAAAA  150

seq1  AATGTGAAAAAGACGCAACGCATGCTTAGTACAGAGAACTAGAAAACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAAAAAGACGCAACGCATGCTTAGTACAGAGAACTAGAAAACACA  200

seq1  GAGGGTTACACTGTCACTGCTGATACTAAGATCATTTCCTCTATATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTACACTGTCACTGCTGATACTAAGATCATTTCCTCTATATACCT  250

seq1  ACGTTTTGGTTTTTTTAGTTGGCACGTGACTTGCATGTGTTTACAGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTTGGTTTTTTTAGTTGGCACGTGACTTGCATGTGTTTACAGCCTA  300

seq1  CCATATGCTGATTCAAAGCACATAATTCAATGCATACACAACATTAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATGCTGATTCAAAGCACATAATTCAATGCATACACAACATTAAGGT  350

seq1  TCTGGTTTTACTCTTGTCTTTAACAATCAGTGGTGACAGGTGTGGGCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTTACTCTTGTCTTTAACAATCAGTGGTGACAGGTGTGGGCCAG  400

seq1  AGAGGCCGCTCGGTGGACAAGGCACTTGCCATGTGTGGGTGAAGAGCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGCTCGGTGGACAAGGCACTTGCCATGTGTGGGTGAAGAGCAGA  450

seq1  GTTTGCATCCCCAGTACCCACATAAATGCAAGGCGGCTGTGCCATGTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCATCCCCAGTACCCACATAAATGCAAGGCGGCTGTGCCATGTGCC  500

seq1  TTCTGCCAGGAATTCCAGTGCTCAGGATGGGGAGACTGGGATCATCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCCAGGAATTCCAGTGCTCAGGATGGGGAGACTGGGATCATCCAGG  550

seq1  GCAAGCCAGGCTAGCAAGAATGAGCAAGCTTCAGGTTCAGTGAAGGGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCAGGCTAGCAAGAATGAGCAAGCTTCAGGTTCAGTGAAGGGAGG  600

seq1  TCAAGAGAGACCTTAGATGTCAACTTCAGGCTTCTATGTGCAGTTGTACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGAGACCTTAGATGTCAACTTCAGGCTTCTATGTGCAGTTGTACC  650

seq1  TCTGCGCATGGGCACCCGAACAACCGTGTGCTTACACACAAGGGAAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGCATGGGCACCCGAACAACCGTGTGCTTACACACAAGGGAAAGGG  700

seq1  CACATGGACACTGCAAACACACACCATATTAGCAATCACCTTTGGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGACACTGCAAACACACACCATATTAGCAATCACCTTTGGAAGAA  750

seq1  ACTCTGCTGCAAAGGGACAG-TTAAGGCAGGTTAGCATCTGATTCACGAT  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACTCTGCTGCAAAGGGACAGTTTAAGGCAGGTTAGCATCTGATTCACGAT  800

seq1  GTTTCCCTAACACAAACATCAGTGTGTATCTTCCTCTTAAAGCTTTGTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTAACACAAACATCAGTGTGTATCTTCCTCTTAAAGCTTTGTAT  850

seq1  GTGTCCAATGTACACAGTGAACAACAATAAAATCTTC-AGAGTCTTGCTG  898
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGTCCAATGTACACAGTGAACAACAATAAAATCTTCAAGAGTCTTGCTG  900

seq1  CA-CTCAGTCTTTCATCTGCAT-TTGAAG-TTCTGACACATG-AGGCCAC  944
      || ||||||||||||||||||| |||||| |||||||||||| |||||||
seq2  CACCTCAGTCTTTCATCTGCATATTGAAGTTTCTGACACATGAAGGCCAC  950

seq1  AT-ATGCGAA-TTATT--CT-CACACTTGGCAGTTGCTGTGA-TTTTAAT  988
      || ||||||| |||||  || ||||||| |||| |||||||| |||||||
seq2  ATAATGCGAATTTATTTCCTCCACACTT-GCAGGTGCTGTGATTTTTAAT  999

seq1  A--TC-TTAT-GGCGG-ATTTC-ATTCGGGTTTTTT---AAATA  1023
      |  || |||| ||||| ||||| |||||||||||||   |||||
seq2  AATTCTTTATGGGCGGAATTTCAATTCGGGTTTTTTTTAAAATA  1043