BAC Information

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BAC

Clone NameB6Ng01-242J09
Chromosome6 (Build37)
Map Location 109,798,413 - 109,907,941
singlet/doubletdoublet
Overlap genenone
Upstream geneEdem1, EG627371, LOC639110, LOC100043720
Downstream geneGrm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242J09.bB6Ng01-242J09.g
ACCGA052189GA052190
length3491,037
definitionB6Ng01-242J09.b B6Ng01-242J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,798,413 - 109,798,769)(109,906,920 - 109,907,941)
sequence
atgttttgagttagtttcttattttcccttttgtggagttcccatattac
cttgtttgaatatactgactttccagtacccattctgcctaccctctcac
accctcgacccatttcggtttcactttcagtttgtttgttacttatttga
aacaaagcatcatttcttgtactcttttctctcttctctcctttcctcca
tacctaccttattaatgttttgtacatttacatacacaaaatagtagttc
ttccattagcacacacacacagagagagagagagagagagagagagagag
agagagagagagagagagagagagagagagacagagagggagggaggga

gaattccaagctcaccattggcttcaaggattttctaagaaccgttggaa
cactggtggaggcttagctatatgtcaaaaatcaatccttacaggcactt
ataatgaaacaatactgaaagagagcacatggattcatacaccagactaa
agcggggacagggtttgagtatatgggctatgggaatgccaaggttccag
gaggcatagtttccttgaaactcctcacctcatgactgccttcaggcctt
tcggcttgtcaggcagactgcactggagcggatgtagcaattgtcaacta
aatattaaacagctccatctcataatggactctcttaagactccttaagt
agtgggtctgagtttataaaaataagccagactctgaatgccagactccc
ccagcctgttttagttgtcctgttcttgatcctgcccatcaatataggta
aatgggatccttggtgtttggggtctattatgaatgcttttgcaaagttc
ccaagagaaaaatgagattggaagtagagcttgtgagatcttgtagctca
gcccagaggaaacatttgtaggagtttctgctggcatagccttctgtgga
tatgtatctttaaataatagggtgagtggcaaccccctttctccatgtaa
gtacaatagcctgaaatgtcttctgatagaacatagtttctttcattgaa
atctcaaattagaaagcagttgtgtactagaataaacaatagtttataag
tattctatgattaaattagtgacaaattatgcttcataaaatataaaatt
taagtttggtttataaaatataaaatttaatttgggaactattaaaaagc
aatagttcatcttaagtttagaatccccaataactggctttttaaagaaa
tatatacctgtaagtccaaaaatattggactctatttatggttcaattta
aattcctggatcagggcttgcctagaaacttactatctagaaccagactg
ggaactcttaaacttcaatgcaatctttcttgcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_109798413_109798769
seq2: B6Ng01-242J09.b_45_399

seq1  GAATTCATGTTTTGAGTTAGTTTCTTATTTTCCCTTTTGTGGAGTTCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTTGAGTTAGTTTCTTATTTTCCCTTTTGTGGAGTTCCCA  50

seq1  TATTACCTTGTTTGAATATACTGACTTTCCAGTACCCATTCTGCCTACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTTGTTTGAATATACTGACTTTCCAGTACCCATTCTGCCTACCC  100

seq1  TCTCACACCCTCGACCCATTTCGGTTTCACTTTCAGTTTGTTTGTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACCCTCGACCCATTTCGGTTTCACTTTCAGTTTGTTTGTTACTT  150

seq1  ATTTGAAACAAAGCATCATTTCTTGTACTCTTTTCTCTCTTCTCTCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAACAAAGCATCATTTCTTGTACTCTTTTCTCTCTTCTCTCCTTT  200

seq1  CCTCCATACCTACCTTATTAATGTTTTGTACATTTACATACACAAAATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATACCTACCTTATTAATGTTTTGTACATTTACATACACAAAATAG  250

seq1  TAGTTCTTCCATTAGCACACACACACAGAGAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TAGTTCTTCCATTAGCACACACACAC--AGAGAGAGAGAGAGAGAGAGAG  298

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGAGGGAG  348

seq1  GGAGGGA  357
      |||||||
seq2  GGAGGGA  355


seq1: chr6_109906920_109907941
seq2: B6Ng01-242J09.g_71_1107 (reverse)

seq1  TGAAGC-AGAAAGATTGCATTG-AGTTTAAGAGT--CCAGTCTGG-TCTA  45
      |||||| ||||||||||||||| |||||||||||  ||||||||| ||||
seq2  TGAAGCAAGAAAGATTGCATTGAAGTTTAAGAGTTCCCAGTCTGGTTCTA  50

seq1  GATAGTAAG-TTCTAGGCCAG-CCTGATCCAGGAA-TTAAAATGACCAAT  92
      ||||||||| |||||||| || ||||||||||||| ||||| ||| | ||
seq2  GATAGTAAGTTTCTAGGCAAGCCCTGATCCAGGAATTTAAATTGAACCAT  100

seq1  AAATAGAGT-CAATATTTTT-GACTTACA-GTATATATTTCTTTAAAAAG  139
      ||||||||| |||||||||| |||||||| ||||||||||||||||||||
seq2  AAATAGAGTCCAATATTTTTGGACTTACAGGTATATATTTCTTTAAAAAG  150

seq1  -CAGTAATT-GGGATTCTAAACTTAAGATGAACTATTGC-TTTTAATAGT  186
       |||| ||| ||||||||||||||||||||||||||||| ||||||||||
seq2  CCAGTTATTGGGGATTCTAAACTTAAGATGAACTATTGCTTTTTAATAGT  200

seq1  TCCAAATTTAAATTTTATATTTTATAAACCAAACTTAAATTTTATATTTT  236
      ||| || |||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAATTAAATTTTATATTTTATAAACCAAACTTAAATTTTATATTTT  250

seq1  ATGAAGCATAATTTGTCACTAATTTAATCATAGAATACTTATAAACTATT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCATAATTTGTCACTAATTTAATCATAGAATACTTATAAACTATT  300

seq1  GTTTATTCTAGTACACAACTGCTTTCTAATTTGAGATTTCAATG-AAGAA  335
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTTTATTCTAGTACACAACTGCTTTCTAATTTGAGATTTCAATGAAAGAA  350

seq1  ACTATGTTCTATCAGAAGACATTTCAGGCTATTGTACTTACATGGAGAAA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTCTATCAGAAGACATTTCAGGCTATTGTACTTACATGGAGAAA  400

seq1  GGGGGTTGCCACTCACCCTATTATTTAAAGATACATATCCACAGAAGGCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTTGCCACTCACCCTATTATTTAAAGATACATATCCACAGAAGGCT  450

seq1  ATGCCAGCAGAAACTCCTACAAATGTTTCCTCTGGGCTGAGCTACAAGAT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCAGAAACTCCTACAAATGTTTCCTCTGGGCTGAGCTACAAGAT  500

seq1  CTCACAAGCTCTACTTCCAATCTCATTTTTCTCTTGGGAACTTTGCAAAA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGCTCTACTTCCAATCTCATTTTTCTCTTGGGAACTTTGCAAAA  550

seq1  GCATTCATAATAGACCCCAAACACCAAGGATCCCATTTACCTATATTGAT  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCATAATAGACCCCAAACACCAAGGATCCCATTTACCTATATTGAT  600

seq1  GGGCAGGATCAAGAACAGGACAACTAAAACAGGCTGGGGGAGTCTGGCAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGATCAAGAACAGGACAACTAAAACAGGCTGGGGGAGTCTGGCAT  650

seq1  TCAGAGTCTGGCTTATTTTTATAAACTCAGACCCACTACTTAAGGAGTCT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTCTGGCTTATTTTTATAAACTCAGACCCACTACTTAAGGAGTCT  700

seq1  TAAGAGAGTCCATTATGAGATGGAGCTGTTTAATATTTAGTTGACAATTG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAGTCCATTATGAGATGGAGCTGTTTAATATTTAGTTGACAATTG  750

seq1  CTACATCCGCTCCAGTGCAGTCTGCCTGACAAGCCGAAAGGCCTGAAGGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCCGCTCCAGTGCAGTCTGCCTGACAAGCCGAAAGGCCTGAAGGC  800

seq1  AGTCATGAGGTGAGGAGTTTCAAGGAAACTATGCCTCCTGGAACCTTGGC  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGAGGTGAGGAGTTTCAAGGAAACTATGCCTCCTGGAACCTTGGC  850

seq1  ATTCCCATAGCCCATATACTCAAACCCTGTCCCCGCTTTAGTCTGGTGTA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCATAGCCCATATACTCAAACCCTGTCCCCGCTTTAGTCTGGTGTA  900

seq1  TGAATCCATGTGCTCTCTTTCAGTATTGTTTCATTATAAGTGCCTGTAAG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCATGTGCTCTCTTTCAGTATTGTTTCATTATAAGTGCCTGTAAG  950

seq1  GATTGATTTTTGACATATAGCTAAGCCTCCACCAGTGTTCCAACGGTTCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGATTTTTGACATATAGCTAAGCCTCCACCAGTGTTCCAACGGTTCT  1000

seq1  TAGAAAATCCTTGAAGCCAATGGTGAGCTTGGAATTC  1022
      |||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATCCTTGAAGCCAATGGTGAGCTTGGAATTC  1037


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