BAC Information

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BAC

Clone NameB6Ng01-244K24
Chromosome6 (Build37)
Map Location 44,655,642 - 44,772,991
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC546897, LOC665779
Downstream geneLOC100040210, Cntnap2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244K24.bB6Ng01-244K24.g
ACCGA053760GA053761
length1,0041,154
definitionB6Ng01-244K24.b B6Ng01-244K24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,655,642 - 44,656,668)(44,771,828 - 44,772,991)
sequence
gaattcattattggtaagacttctgaatagtggttccatggatgactgtt
agagagggctgacccccccaataatacacatgattattttagtaggttgc
cttcaatatgcttctctacacaaccacatggtgcttcttttgtgaactca
agagtctatagtttctcatgtgttggcaagggtatctaactacttcataa
gtttctggtggaaatgttaaagagccgagtgagtctggacatggagtcag
caggaagttgattgccttttacatgcagcaatactcctgtagatattatt
tcatatttttaataatgttcttgtcatttaataagtgtatttgctatttg
cttacttataaaaatatctttgaagtctttttccttttaaaattctatgt
taattttgcttcctatactactcacaagttcttttttttttttttttttt
ttatattataatttaattttaataatagttttgaattctatagcaatata
ttagccaggcgtggtggcccacacctttaatcccagcactcgggaggcag
aggcaggtgatttctgagtttgaggccagcctggtctacagagtgagttc
taggacagccagagctatacagagaaaccaagtcaaaaaaataaagaaag
aaaagaaaagaaaagaaatatgttcatatcatattgaaacaacattttct
gtgactgagtccaaataaaaatgattattcatatctaatatcccataatt
ctgcggcttctggccttgactaacatgggtctttattttttcttttttcc
attttttattaaggtatttagctcatttacatttccaatgctataccaaa
agtccccataccaaccaaccccctcccctaactagcaattctccatttgg
cctggcgtcccttgtactggggcaataaagtttgtggtcaatggcctcct
tcagtgatggcgactaggcatcttttgatactattgcagctaagtcaaga
gctc

gaattcaaaagcaccactctcagcaattgacaggtcatctaagcagaaag
tcaacagagaaataatgaaactaaaaaagggttattaatcaaattaacct
aacaaacatctacagaatatataacccaaacaaaacagaatatactttct
tctcagcacctgatggaactttctccaaaattgactgtgtactcagtcac
acagcaagcctcaacatatacaagatgattgaaataaactttaatatctt
atgagatcatgattgactaaaactgaatttcaaaaagaatagaaacaaca
aaaagcctacatactcctgtctacctctactcaatgacaactgagtaaga
gaagaaagaaagaaatcaaagacagtttagtttaatgaaaacaaaaggtt
aatatacacaaacatatggggcacaatggaaactgctgggagcagcatac
tatgacagggaaggcctacagcaggctgggatagacacatctcagaagct
ggtggcagctctttgttgaaaaaaagttggtcccatttctcctaacctta
gccctggttaaaggctgtatagatttcatttgtgagtgactgcttttcag
ttgaccttggtgtgcataattattctattatatctgactttcctatttcc
ctttccttctgctcggttgaattctgtgaaactagatgttccttggtgca
ttgatttttaaacaattaaaaatcgaggcataggggacacagcataacac
agtcctaatgtcccaggtgcatgctgtgtgctctcatcttggaaacaatg
taataactgcacagtgacagtttcagattaatgtttgacttgcaaagaaa
gtttgaagaaattattagaaaatgaaatagagcaaattttgtgaccccaa
gaaaggaagaaaactattgaagttatgaaatatgttttgcacacatttag
agtggttcctggatagaaagtatggaatgcataaattatatatagtaaac
taaatcaaacacaggactcttagccagttattttgtgtgcatgtacaaga
gcagaaaagctagtaaaactgctgtgttaggtaactggattttttctgcc
actactaagaaatgtgtgcgctggccatcatcatagaagcgggccaagaa
aatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_44655642_44656668
seq2: B6Ng01-244K24.b_44_1047

seq1  GAATTCATTATTGGTAAGACTTCTGAATAGTGGTTCCATGGATGACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTGGTAAGACTTCTGAATAGTGGTTCCATGGATGACTGTT  50

seq1  AGAGAGGGCTGACCCCCCCAATAATACACATGATTATTTTAGTAGGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCTGACCCCCCCAATAATACACATGATTATTTTAGTAGGTTGC  100

seq1  CTTCAATATGCTTCTCTACACAACCACATGGTGCTTCTTTTGTGAACTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATATGCTTCTCTACACAACCACATGGTGCTTCTTTTGTGAACTCA  150

seq1  AGAGTCTATAGTTTCTCATGTGTTGGCAAGGGTATCTAACTACTTCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTATAGTTTCTCATGTGTTGGCAAGGGTATCTAACTACTTCATAA  200

seq1  GTTTCTGGTGGAAATGTTAAAGAGCCGAGTGAGTCTGGACATGGAGTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTGGAAATGTTAAAGAGCCGAGTGAGTCTGGACATGGAGTCAG  250

seq1  CAGGAAGTTGATTGCCTTTTACATGCAGCAATACTCCTGTAGATATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTTGATTGCCTTTTACATGCAGCAATACTCCTGTAGATATTATT  300

seq1  TCATATTTTTAATAATGTTCTTGTCATTTAATAAGTGTATTTGCTATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTTTAATAATGTTCTTGTCATTTAATAAGTGTATTTGCTATTTG  350

seq1  CTTACTTATAAAAATATCTTTGAAGTCTTTTTCCTTTTAAAATTCTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTATAAAAATATCTTTGAAGTCTTTTTCCTTTTAAAATTCTATGT  400

seq1  TAATTTTGCTTCCTATACTACTCACAAGTTCTTTTTTTTTTTTTTTTTTT  450
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAATTTTGCTTCCTATACTACTCACAAGTTC-TTTTTTTTTTTTTTTTTT  449

seq1  TTTATATTATAATTTAATTTTAATAATAGTTTTGAATTCTATAGCAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTATAATTTAATTTTAATAATAGTTTTGAATTCTATAGCAATAT  499

seq1  ATTAGCCAGGCGTGGTGGCCCACACCTTTAATCCCAGCACTCGGGAGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCCAGGCGTGGTGGCCCACACCTTTAATCCCAGCACTCGGGAGGCA  549

seq1  GAGGCAGGTGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGTGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTT  599

seq1  CTAGGACAGCCAGAGCTATACAGAGAAACCAAGTCAAAAAAATAAAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGACAGCCAGAGCTATACAGAGAAACCAAGTCAAAAAAATAAAGAAA  649

seq1  GAAAAGAAAAGAAAAGAAATATGTTCATATCATATTGAAACAACATTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAAGAAAAGAAATATGTTCATATCATATTGAAACAACATTTTC  699

seq1  TGTGACTGAGTCCAAATAAAAATGATTATTCATATCTAATATCCCATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTGAGTCCAAATAAAAATGATTATTCATATCTAATATCCCATAAT  749

seq1  TCTGCGGCTTCTGGCCTTGACTAACATGGTTCTTTTTTTTTTTTTTTTTT  800
      ||||||||||||||||||||||||||||| ||      ||| |||||| |
seq2  TCTGCGGCTTCTGGCCTTGACTAACATGGGTC------TTTATTTTTTCT  793

seq1  TTTTTCCATTTTTTATT-AGGTATTTAGCTCATTTACATTTCCAATGCTA  849
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTTTCCATTTTTTATTAAGGTATTTAGCTCATTTACATTTCCAATGCTA  843

seq1  TACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTACCTGCCCACT  899
      |||||||||| ||||||||| ||| |||||  |||||||| ||  | | |
seq2  TACCAAAAGT-CCCCATACCAACCAACCCC--CTCCCCTAACTAGCAATT  890

seq1  CCCCCTTTTTGGCCCTGGCGTTCCCCTGTTCTGGGGCATATAAAGTTTGT  949
      | || |||   | ||||||| |||| ||| |||||||| |||||||||||
seq2  CTCCATTT---GGCCTGGCG-TCCCTTGTACTGGGGCA-ATAAAGTTTGT  935

seq1  GTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTG  999
      | || |||| |||||| |||  ||||||||| |||||||| |||||||||
seq2  G-GT-CAAT-GGCCTC-CTT--CAGTGATGG-CGACTAGG-CATCTTTTG  977

seq1  ATACATATGCAGCTAGAGTCAAGAGCTC  1027
      ||||   |||||||| ||||||||||||
seq2  ATACTATTGCAGCTA-AGTCAAGAGCTC  1004


seq1: chr6_44771828_44772991
seq2: B6Ng01-244K24.g_68_1221 (reverse)

seq1  CATTTTCTTGTGCAGCTCTAATGATGAATGGCAAGCGCACA-ATTTCTAG  49
      ||||||||||  | |||   |||||| ||||| |||||||| ||||||  
seq2  CATTTTCTTGGCCCGCTTCTATGATG-ATGGCCAGCGCACACATTTCTTA  49

seq1  GTAGTGGCCAGAAAAAATCAAGTTAACCCTTAACACAGCAGTTTTACTAG  99
      ||||||| ||||||||||| |||||   | ||||||||||||||||||||
seq2  GTAGTGG-CAGAAAAAATCCAGTTA---CCTAACACAGCAGTTTTACTAG  95

seq1  C-TTTCTGCTTCTGTACATTGCACACAAA--TACTGGCTAAGAGTCCCTG  146
      | ||||||||  |||||| ||||||||||   ||||||||||||| ||||
seq2  CTTTTCTGCTCTTGTACA-TGCACACAAAATAACTGGCTAAGAGT-CCTG  143

seq1  TGTTTTGATTTAGTTTTACTAATATATAATTTTATGCATTCCATACTTTC  196
      || |||||||||| |||||| |||||||| ||||||||||||||||||||
seq2  TG-TTTGATTTAG-TTTACT-ATATATAA-TTTATGCATTCCATACTTTC  189

seq1  TTATCCAGGAACCACTCTTAAATGTTGTGCAAAACATATTTCATAACTTC  246
       |||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  -TATCCAGGAACCACTC-TAAATG-TGTGCAAAACATATTTCATAACTTC  236

seq1  AATAGTTTTCTTCCTTTCTTGGGGTCACAAAATTTGCTCTATTTCATTTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTTCTTCCTTTCTTGGGGTCACAAAATTTGCTCTATTTCATTTT  286

seq1  CTAATAATTTCTTCAAACTTTCTTTGCAAGTCAAACATTAATCTGAAACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATTTCTTCAAACTTTCTTTGCAAGTCAAACATTAATCTGAAACT  336

seq1  GTCACTGTGCAGTTATTACATTGTTTCCAAGATGAGAGCACACAGCATGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGCAGTTATTACATTGTTTCCAAGATGAGAGCACACAGCATGC  386

seq1  ACCTGGGACATTAGGACTGTGTTATGCTGTGTCCCCTATGCCTCGATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGACATTAGGACTGTGTTATGCTGTGTCCCCTATGCCTCGATTTT  436

seq1  TAATTGTTTAAAAATCAATGCACCAAGGAACATCTAGTTTCACAGAATTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTAAAAATCAATGCACCAAGGAACATCTAGTTTCACAGAATTC  486

seq1  AACCGAGCAGAAGGAAAGGGAAATAGGAAAGTCAGATATAATAGAATAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGCAGAAGGAAAGGGAAATAGGAAAGTCAGATATAATAGAATAAT  536

seq1  TATGCACACCAAGGTCAACTGAAAAGCAGTCACTCACAAATGAAATCTAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACACCAAGGTCAACTGAAAAGCAGTCACTCACAAATGAAATCTAT  586

seq1  ACAGCCTTTAACCAGGGCTAAGGTTAGGAGAAATGGGACCAACTTTTTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTTAACCAGGGCTAAGGTTAGGAGAAATGGGACCAACTTTTTTT  636

seq1  CAACAAAGAGCTGCCACCAGCTTCTGAGATGTGTCTATCCCAGCCTGCTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAGAGCTGCCACCAGCTTCTGAGATGTGTCTATCCCAGCCTGCTG  686

seq1  TAGGCCTTCCCTGTCATAGTATGCTGCTCCCAGCAGTTTCCATTGTGCCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTCCCTGTCATAGTATGCTGCTCCCAGCAGTTTCCATTGTGCCC  736

seq1  CATATGTTTGTGTATATTAACCTTTTGTTTTCATTAAACTAAACTGTCTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTTGTGTATATTAACCTTTTGTTTTCATTAAACTAAACTGTCTT  786

seq1  TGATTTCTTTCTTTCTTCTCTTACTCAGTTGTCATTGAGTAGAGGTAGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCTTTCTTTCTTCTCTTACTCAGTTGTCATTGAGTAGAGGTAGAC  836

seq1  AGGAGTATGTAGGCTTTTTGTTGTTTCTATTCTTTTTGAAATTCAGTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTATGTAGGCTTTTTGTTGTTTCTATTCTTTTTGAAATTCAGTTTT  886

seq1  AGTCAATCATGATCTCATAAGATATTAAAGTTTATTTCAATCATCTTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATCATGATCTCATAAGATATTAAAGTTTATTTCAATCATCTTGTA  936

seq1  TATGTTGAGGCTTGCTGTGTGACTGAGTACACAGTCAATTTTGGAGAAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGAGGCTTGCTGTGTGACTGAGTACACAGTCAATTTTGGAGAAAG  986

seq1  TTCCATCAGGTGCTGAGAAGAAAGTATATTCTGTTTTGTTTGGGTTATAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCAGGTGCTGAGAAGAAAGTATATTCTGTTTTGTTTGGGTTATAT  1036

seq1  ATTCTGTAGATGTTTGTTAGGTTAATTTGATTAATAACCCTTTTTTAGTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTAGATGTTTGTTAGGTTAATTTGATTAATAACCCTTTTTTAGTT  1086

seq1  TCATTATTTCTCTGTTGACTTTCTGCTTAGATGACCTGTCAATTGCTGAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTCTCTGTTGACTTTCTGCTTAGATGACCTGTCAATTGCTGAG  1136

seq1  AGTGGTGCTTTTGAATTC  1164
      ||||||||||||||||||
seq2  AGTGGTGCTTTTGAATTC  1154


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