BAC Information

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BAC

Clone NameB6Ng01-244L09
Chromosome6 (Build37)
Map Location 86,164,089 - 86,279,386
singlet/doubletdoublet
Overlap geneTgfa, LOC665233, LOC100043094
Upstream geneSfxn5, Rab11fip5, Noto, Smyd5, 1700040I03Rik, Cct7, Fbxo41, Egr4, Alms1, LOC100043497, EG665134, LOC100043493, Cml3, LOC623273, Cml5, Cml4, LOC100043504, LOC100043508, Cml2, LOC665177, 1700019G17Rik, Cml1, Tprkb, EG434057, LOC665213, Dusp11, Figla, Add2
Downstream geneLOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e, Antxr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244L09.bB6Ng01-244L09.g
ACCGA053778GA053779
length1,188569
definitionB6Ng01-244L09.b B6Ng01-244L09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,164,089 - 86,165,260)(86,278,819 - 86,279,386)
sequence
gaattctgtgcttgattagtaatgcctgctggggatctagcagggaggta
tctctacatatgtaacctatgtgtatcattgctcaagatgttgacccatt
tttcatagaatgagaaaaatgatgtatttcctaatcctggaagtattctt
acttatgctttcttatctttcatgtctttcttgtttatttcttggttgct
gtaattaaatgctgaccaaatcaaacttagggaggatgacctcttaccag
aaagaactctgggctttaccatttctagagggaaggactcctttcctttg
aaggcttgtaacaatccatcagtggggacagctgtctgtccagttctctc
catatgaaaatgtcacaggagatggaaggaactagagacctgcactggtc
cccatggacctagaggctgcttccgagccagtgtctttagcacagggaca
cacagagcagagtgcagtctttgagtctgtgggtttgctgctgattgagc
ttatttgctgtgtctcccatctgagtcttgggtgccaacccctggtggtg
ctgaggttgcaggatgataccctgggtgagcttccaaaaggcctttgggc
tggtatcttcttccagagggaacctggcctgggtgtccctggggatctca
gagggcagagaaagtagcaaaagtctccatggctatggttcatattgtga
tgaaggttgtgtgtagtgcccaatcaggagcccctctcccatatacctgg
aagaccaagaggataactagccactgttccctgtcatggtgtgatgacaa
ccaatataaaagcattggccaggtcctaagaaggaatgtctctagcatct
gccactgtgcagtaggaacaatacttgtggccctggaccaggatgctaga
ttatcttggtgtgtccaaggctgctaggatgcctggctgccgcctgtcag
cctccaacactggaatgcttcttctgaaaaactcctttgcccaccagatc
tgccccttatttctccatcctcctctgatgcctttttctgtgtcctctgt
tccctagagattggggttttcctctgtttccttcctctctcagacacgtt
tctgtgatttagatcaagggtggggaataggtgatcttgccattggagat
tgagtcaccagctgaaagcctgggccattggttgtgtt
ttctttccacctggttgaggcaggctttctctgtgccagcccgactgaag
cctgaagcctgtgggcttttggcctgatttttctgtctctgcttcccgtc
tctcaggaatgttgggattacagatatgcatttatttgttgtttctattt
tgagaaaagatctatgttgccttggctgggctgaaattcagtatgtagtt
cagactattctcgaactcacagaggtctgcctgcctctgcttcctgagtg
ccaggactaaaggcacatgtcactcactatgtctggctgcatttgttgtt
tgtttgtttgtttatttatttatttattggttctggggactgaactcagt
ttgtcaggcttgtggtacaaatattttcatctgctgagccattttcttgg
ttacatgctaggttcttcaagaaaaacccaacaaagatataaagtattca
ctcaataggaaaaaatttcaccccctcattccatctacctcagcctgaag
atattgggtataaagatctaagatccaagtgttaggacacactagagaaa
tctgggggggggggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_86164089_86165260
seq2: B6Ng01-244L09.b_47_1234

seq1  GAATTCTGTGCTTGATTAGTAATGCCTGCTGGGGATCTAGCAGGGAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTTGATTAGTAATGCCTGCTGGGGATCTAGCAGGGAGGTA  50

seq1  TCTCTACATATGTAACCTATGTGTATCATTGCTCAAGATGTTGACCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACATATGTAACCTATGTGTATCATTGCTCAAGATGTTGACCCATT  100

seq1  TTTCATAGAATGAGAAAAATGATGTATTTCCTAATCCTGGAAGTATTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAGAATGAGAAAAATGATGTATTTCCTAATCCTGGAAGTATTCTT  150

seq1  ACTTATGCTTTCTTATCTTTCATGTCTTTCTTGTTTATTTCTTGGTTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGCTTTCTTATCTTTCATGTCTTTCTTGTTTATTTCTTGGTTGCT  200

seq1  GTAATTAAATGCTGACCAAATCAAACTTAGGGAGGATGACCTCTTACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTAAATGCTGACCAAATCAAACTTAGGGAGGATGACCTCTTACCAG  250

seq1  AAAGAACTCTGGGCTTTACCATTTCTAGAGGGAAGGACTCCTTTCCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCTGGGCTTTACCATTTCTAGAGGGAAGGACTCCTTTCCTTTG  300

seq1  AAGGCTTGTAACAATCCATCAGTGGGGACAGCTGTCTGTCCAGTTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGTAACAATCCATCAGTGGGGACAGCTGTCTGTCCAGTTCTCTC  350

seq1  CATATGAAAATGTCACAGGAGATGGAAGGAACTAGAGACCTGCACTGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAAAATGTCACAGGAGATGGAAGGAACTAGAGACCTGCACTGGTC  400

seq1  CCCATGGACCTAGAGGCTGCTTCCGAGCCAGTGTCTTTAGCACAGGGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGACCTAGAGGCTGCTTCCGAGCCAGTGTCTTTAGCACAGGGACA  450

seq1  CACAGAGCAGAGTGCAGTCTTTGAGTCTGTGGGTTTGCTGCTGATTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGCAGAGTGCAGTCTTTGAGTCTGTGGGTTTGCTGCTGATTGAGC  500

seq1  TTATTTGCTGTGTCTCCCATCTGAGTCTTGGGTGCCAACCCCTGGTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCTGTGTCTCCCATCTGAGTCTTGGGTGCCAACCCCTGGTGGTG  550

seq1  CTGAGGTTGCAGGATGATACCCTGGGTGAGCTTCCAAAAGGCCTTTGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTGCAGGATGATACCCTGGGTGAGCTTCCAAAAGGCCTTTGGGC  600

seq1  TGGTATCTTCTTCCAGAGGGAACCTGGCCTGGGTGTCCCTGGGGATCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCTTCTTCCAGAGGGAACCTGGCCTGGGTGTCCCTGGGGATCTCA  650

seq1  GAGGGCAGAGAAAGTAGCAAAAGTCTCCATGGCTATGGTTCATATTGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGAGAAAGTAGCAAAAGTCTCCATGGCTATGGTTCATATTGTGA  700

seq1  TGAAGGTTGTGTGTAGTGCCCAATCAGGAGCCCCTCTCCCATATACCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGTTGTGTGTAGTGCCCAATCAGGAGCCCCTCTCCCATATACCTGG  750

seq1  AAGACCAAGAGGATAACTAGCCACTGTTCCCTGTCATGGTGTGATGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCAAGAGGATAACTAGCCACTGTTCCCTGTCATGGTGTGATGACAA  800

seq1  CCAATATAAAAGCATTGGCCAGGTCCTAAGAAGGAATGTCTCTAGCATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATAAAAGCATTGGCCAGGTCCTAAGAAGGAATGTCTCTAGCATCT  850

seq1  GCCACTGTGCAGTAGGAACAATACTTGTGGCCCTGGACCAGGATGCTAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTGTGCAGTAGGAACAATACTTGTGGCCCTGGACCAGGATGCTAGA  900

seq1  TTATCTTGGTGTGTCCAAGGCTGCTAGGATGCCTGGCTG-CGCCTGTCAG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTATCTTGGTGTGTCCAAGGCTGCTAGGATGCCTGGCTGCCGCCTGTCAG  950

seq1  CCTCC-ACACTGGAATGCTTC-TCTGAAAAACTCC-TTGCACA-CAGATC  995
      ||||| ||||||||||||||| ||||||||||||| |||| || ||||||
seq2  CCTCCAACACTGGAATGCTTCTTCTGAAAAACTCCTTTGCCCACCAGATC  1000

seq1  TG-CCCTTATTTCTCCATCCT-CTCTGATGCC-TTTTCTGTGTCCTCTGT  1042
      || |||||||||||||||||| |||||||||| |||||||||||||||||
seq2  TGCCCCTTATTTCTCCATCCTCCTCTGATGCCTTTTTCTGTGTCCTCTGT  1050

seq1  T-CCTAGAGATTGGGGTTTTCCTCTGTTCCCTTCCTCTCTTCAGACACG-  1090
      | |||||||||||||||||||||||||| |||||||||| ||||||||| 
seq2  TCCCTAGAGATTGGGGTTTTCCTCTGTTTCCTTCCTCTC-TCAGACACGT  1099

seq1  TTCTGTGATTAAGATCAAGGGTGGGG-ATAGGTGGTCTTGCCAGTGGAGA  1139
      |||||||||| ||||||||||||||| ||||||| |||||||| ||||||
seq2  TTCTGTGATTTAGATCAAGGGTGGGGAATAGGTGATCTTGCCATTGGAGA  1149

seq1  -TGAGTCACCAGCTG-AAGC--TGGCCATTG--TGTGTT  1172
       |||||||||||||| ||||   ||||||||  ||||||
seq2  TTGAGTCACCAGCTGAAAGCCTGGGCCATTGGTTGTGTT  1188

seq1: chr6_86278819_86279386
seq2: B6Ng01-244L09.g_71_638 (reverse)

seq1  CCTCTCCCCCCCCCCCAGATTTCTCTAGTGTGTCCTAACACTTGGATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCCCCCCCCCAGATTTCTCTAGTGTGTCCTAACACTTGGATCTT  50

seq1  AGATCTTTATACCCAATATCTTCAGGCTGAGGTAGATGGAATGAGGGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTATACCCAATATCTTCAGGCTGAGGTAGATGGAATGAGGGGGT  100

seq1  GAAATTTTTTCCTATTGAGTGAATACTTTATATCTTTGTTGGGTTTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTTTCCTATTGAGTGAATACTTTATATCTTTGTTGGGTTTTTCT  150

seq1  TGAAGAACCTAGCATGTAACCAAGAAAATGGCTCAGCAGATGAAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAACCTAGCATGTAACCAAGAAAATGGCTCAGCAGATGAAAATATT  200

seq1  TGTACCACAAGCCTGACAAACTGAGTTCAGTCCCCAGAACCAATAAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCACAAGCCTGACAAACTGAGTTCAGTCCCCAGAACCAATAAATAA  250

seq1  ATAAATAAACAAACAAACAAACAACAAATGCAGCCAGACATAGTGAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAACAAACAAACAAACAACAAATGCAGCCAGACATAGTGAGTGA  300

seq1  CATGTGCCTTTAGTCCTGGCACTCAGGAAGCAGAGGCAGGCAGACCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCCTTTAGTCCTGGCACTCAGGAAGCAGAGGCAGGCAGACCTCTG  350

seq1  TGAGTTCGAGAATAGTCTGAACTACATACTGAATTTCAGCCCAGCCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCGAGAATAGTCTGAACTACATACTGAATTTCAGCCCAGCCAAGG  400

seq1  CAACATAGATCTTTTCTCAAAATAGAAACAACAAATAAATGCATATCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATAGATCTTTTCTCAAAATAGAAACAACAAATAAATGCATATCTGT  450

seq1  AATCCCAACATTCCTGAGAGACGGGAAGCAGAGACAGAAAAATCAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAACATTCCTGAGAGACGGGAAGCAGAGACAGAAAAATCAGGCCA  500

seq1  AAAGCCCACAGGCTTCAGGCTTCAGTCGGGCTGGCACAGAGAAAGCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACAGGCTTCAGGCTTCAGTCGGGCTGGCACAGAGAAAGCCTGC  550

seq1  CTCAACCAGGTGGAAAGA  568
      ||||||||||||||||||
seq2  CTCAACCAGGTGGAAAGA  568