BAC Information

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BAC

Clone NameB6Ng01-245E11
Chromosome6 (Build37)
Map Location 8,718,209 - 8,832,298
singlet/doubletdoublet
Overlap geneIca1
Upstream geneEG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
Downstream geneLOC100040238, Nxph1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245E11.bB6Ng01-245E11.g
ACCGA054203GA054204
length1,1361,105
definitionB6Ng01-245E11.b B6Ng01-245E11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,718,209 - 8,719,331)(8,831,181 - 8,832,298)
sequence
gaattctctattacagaaaacatcgcagctataccagggggctgacattt
gcagacaataaccgtgaaggctgtaagtgggaaccacgtaagatggcgta
tcagtcaactgtgacactagaaacagggaaagagcaaagaggtggccttt
gctgatgaaaaaagtaattgctgaagcaaagagggagaggatctgctgta
taagtcatatttgcctttgactttatcagtttatatgactttcaaatgct
aactcaaatgtggcagagagattttaatctatacttatggtgctgttttg
tccaaaacattaacctgtgaaggtgaagtgtcaaggtgacaaatgaagaa
cactagcaaaaaccacaagtgtagtatcaaatgtcggcacagggcatcac
gaaatgaccaagtcagatgctattcttcggttgcatttcaattcagactc
aaatataaaactgggaaggctcttccatatgttactttaaaatgtggaaa
ccaagtctacatttttaatgaaaaactagtctatgatacgctaactttat
catataagacatgtaagaccatccaatatagcagctagtggcaactaaac
actggaaatagagctacttagaactcagatgtgttgtctgtgtaaaactc
actagttgtttcaaagacttaacaaaacaaaaagaaccaaacacagcaaa
atatctcactaataaatctctatttgtatgtttatacaaatcattttgta
gttgcatatttacacttacatatctatttaaattttataaagttgtattt
tatattgtaatttatattgtttaataaataaaacaaatattaaatgaaat
ataccatacatgtttaaatatataaataatttatatttagttgtattcta
tgtatgtgctatatatttacacttcatactgaatttattttttatgtatt
gagtaatataaaaagttcaatctgcttcttctagtttttttaaattaaga
ataacttttaacaacaactagactgcttcaattccttacctgtattgttc
tacacagatttttttttttggaacaagccttggtctagcattagccaaaa
taagcaaagagctaggccaccaatattccatgctaa

gaattctcagccaccccagagatgtattcctgcccttaaatagactccca
attaccagagtcccaaccaagaactttaaagtaattgtcaaccaagcata
cattcagcatacttgagaacaaggaagcttaaagctatttgtgactgatt
gcgattgtagccagaagaaacataaatccaaaaagccttgaaaacaaagc
ccaggagtttcacaaaatgaaagttgtttgtagctttaaagttcaaggca
agttttgaaattatacaattttttaatcaactgttttgataaatggtggc
aaaaattaagttctctgttaacagaaagattgaggctgtctcaggctccg
gggagcttgggagaaaggatctactgtgtgaaaggtcagcaaaggctaat
actggaggttttaggagtctatgcttccctcaagtccaaaagtcagcaca
cttctgggtaagaaggcctgaagcctgtctaaagcttcgccttctcatta
gtctgacttcttgctagtattgatctcatacctctcttccaacttccttg
accaaaaccactcccatttttgtttggtatttttccctaacatggtagag
aaaaagagttatatttatcctccaataaagtaattagatttaattcctga
tgcttccaatttttaggtgaaaatctttagacaaatttgacctctgaatg
ggatcaatcatttaggtcagacatgagagtcttacactcatgacttggag
ctaggtggtattccacaggccagtgttgtattcctctataccaaacaata
gccacaaagttagagggcctccccagttatctgtacatctgactaaatgg
cagttaaagtaagatttctcaacctcattgatactttcaatcaatctatt
tgctataaagagattccacaaaccgatttgagagtgtgttcaaacaattc
acagactcaggaaagcattatattacagtagtagttgacgaaagaaagaa
tggtgattagctagaggagagtataagaggacttctgaggtgttcagtat
gacctctctgcatctattgggtggggcacatcagcctaatcaatgtccag
agttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_8718209_8719331
seq2: B6Ng01-245E11.b_46_1181

seq1  GAATTCTCTATTACAGAAAACATCGCAGCTATACCAGGGGGCTGACATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATTACAGAAAACATCGCAGCTATACCAGGGGGCTGACATTT  50

seq1  GCAGACAATAACCGTGAAGGCTGTAAGTGGGAACCACGTAAGATGGCGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAATAACCGTGAAGGCTGTAAGTGGGAACCACGTAAGATGGCGTA  100

seq1  TCAGTCAACTGTGACACTAGAAACAGGGAAAGAGCAAAGAGGTGGCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAACTGTGACACTAGAAACAGGGAAAGAGCAAAGAGGTGGCCTTT  150

seq1  GCTGATGAAAAAAGTAATTGCTGAAGCAAAGAGGGAGAGGATCTGCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGAAAAAAGTAATTGCTGAAGCAAAGAGGGAGAGGATCTGCTGTA  200

seq1  TAAGTCATATTTGCCTTTGACTTTATCAGTTTATATGACTTTCAAATGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATATTTGCCTTTGACTTTATCAGTTTATATGACTTTCAAATGCT  250

seq1  AACTCAAATGTGGCAGAGAGATTTTAATCTATACTTATGGTGCTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAAATGTGGCAGAGAGATTTTAATCTATACTTATGGTGCTGTTTTG  300

seq1  TCCAAAACATTAACCTGTGAAGGTGAAGTGTCAAGGTGACAAATGAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAACATTAACCTGTGAAGGTGAAGTGTCAAGGTGACAAATGAAGAA  350

seq1  CACTAGCAAAAACCACAAGTGTAGTATCAAATGTCGGCACAGGGCATCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGCAAAAACCACAAGTGTAGTATCAAATGTCGGCACAGGGCATCAC  400

seq1  GAAATGACCAAGTCAGATGCTATTCTTCGGTTGCATTTCAATTCAGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGACCAAGTCAGATGCTATTCTTCGGTTGCATTTCAATTCAGACTC  450

seq1  AAATATAAAACTGGGAAGGCTCTTCCATATGTTACTTTAAAATGTGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAAACTGGGAAGGCTCTTCCATATGTTACTTTAAAATGTGGAAA  500

seq1  CCAAGTCTACATTTTTAATGAAAAACTAGTCTATGATACGCTAACTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCTACATTTTTAATGAAAAACTAGTCTATGATACGCTAACTTTAT  550

seq1  CATATAAGACATGTAAGACCATCCAATATAGCAGCTAGTGGCAACTAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAGACATGTAAGACCATCCAATATAGCAGCTAGTGGCAACTAAAC  600

seq1  ACTGGAAATAGAGCTACTTAGAACTCAGATGTGTTGTCTGTGTAAAACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAAATAGAGCTACTTAGAACTCAGATGTGTTGTCTGTGTAAAACTC  650

seq1  ACTAGTTGTTTCAAAGACTTAACAAAACAAAAAGAACCAAACACAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTGTTTCAAAGACTTAACAAAACAAAAAGAACCAAACACAGCAAA  700

seq1  ATATCTCACTAATAAATCTCTATTTGTATGTTTATACAAATCA-TTTGTA  749
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATATCTCACTAATAAATCTCTATTTGTATGTTTATACAAATCATTTTGTA  750

seq1  GTTGCATATTTACACTTACATATCTATTTAAATTTTATAAAGTTGTATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATATTTACACTTACATATCTATTTAAATTTTATAAAGTTGTATTT  800

seq1  TATATTGTAATTTATATTGTTTAATAAATAAAACAAATATTAAATGAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTAATTTATATTGTTTAATAAATAAAACAAATATTAAATGAAAT  850

seq1  ATACCATACATGTTTAAATATATAAATAATTTATATTTAGTTGTATTCTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATACATGTTTAAATATATAAATAATTTATATTTAGTTGTATTCTA  900

seq1  TGTATGTGCTATATATTTACACTTCATACTGAATT--ATTTTTATGTATT  947
      |||||||||||||||||||||||||||||||||||   ||||||||||||
seq2  TGTATGTGCTATATATTTACACTTCATACTGAATTTATTTTTTATGTATT  950

seq1  GAGTAATAT-AAAAGTTC-ATCTGCTTCTTCTAG-TTTTTTAAATTAAGA  994
      ||||||||| |||||||| ||||||||||||||| |||||||||||||||
seq2  GAGTAATATAAAAAGTTCAATCTGCTTCTTCTAGTTTTTTTAAATTAAGA  1000

seq1  AT-ACTTT--ACAACAACTAGACTGCTTCAAATCC-TACCTGTAT--GTC  1038
      || |||||  ||||||||||||||||||||| ||| |||||||||   ||
seq2  ATAACTTTTAACAACAACTAGACTGCTTCAATTCCTTACCTGTATTGTTC  1050

seq1  TAC-CACAGGATTTTTTTTGGA--CAGCCTTGGTCTAAGGCATTAGGC-A  1084
      ||| || |   |||||||||||   ||||||||||||  ||||||| | |
seq2  TACACAGATTTTTTTTTTTGGAACAAGCCTTGGTCTA--GCATTAGCCAA  1098

seq1  AATAAGCAAAGAGCTTAAGCCACCAATATTCCATGCTAA  1123
      |||||||||||||| || |||||||||||||||||||||
seq2  AATAAGCAAAGAGC-TAGGCCACCAATATTCCATGCTAA  1136


seq1: chr6_8831181_8832298
seq2: B6Ng01-245E11.g_64_1168 (reverse)

seq1  GAACTCT-GACATTTGGATAAGGCTGATGTGCCCCAACCCAATAGATGCC  49
      ||||||| ||||||  ||| ||||||||||||||| |||||||||||| |
seq2  GAACTCTGGACATT--GATTAGGCTGATGTGCCCC-ACCCAATAGATG-C  46

seq1  AGAGAGGTTCATACTGGACACCCTTCAGGAAGTTCCTCTTATACTTCTCC  99
      ||||||| |||||||| |||||  ||| |||| ||||||||||| |||||
seq2  AGAGAGG-TCATACTGAACACC--TCA-GAAG-TCCTCTTATAC-TCTCC  90

seq1  TCTTAGCTAATTCACCTTTCTTTCTTTCGTTCAACTACTACTGTAATATA  149
      || ||||||| ||||| |||||||||||| ||||||||||||||||||||
seq2  TC-TAGCTAA-TCACCATTCTTTCTTTCG-TCAACTACTACTGTAATATA  137

seq1  ATGCTTTCCTGAGTCTGTGAATTGTTTGAACACACTCTCAAATCGGTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCTGAGTCTGTGAATTGTTTGAACACACTCTCAAATCGGTTTG  187

seq1  TGGAATCTCTTTATAGCAAATAGATTTGATTGAAAGTATCAATGAGGTTG  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGGAATCTCTTTATAGCAAATAGA-TTGATTGAAAGTATCAATGAGGTTG  236

seq1  AGAAATCTTACTTTAACTGCCATTTAGTCAGATGTACAGATAACTGGGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTTACTTTAACTGCCATTTAGTCAGATGTACAGATAACTGGGGA  286

seq1  GGCCCTCTAACTTTGTGGCTATTGTTTGGTATAGAGGAATACAACACTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTAACTTTGTGGCTATTGTTTGGTATAGAGGAATACAACACTGG  336

seq1  CCTGTGGAATACCACCTAGCTCCAAGTCATGAGTGTAAGACTCTCATGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAATACCACCTAGCTCCAAGTCATGAGTGTAAGACTCTCATGTC  386

seq1  TGACCTAAATGATTGATCCCATTCAGAGGTCAAATTTGTCTAAAGATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTAAATGATTGATCCCATTCAGAGGTCAAATTTGTCTAAAGATTTT  436

seq1  CACCTAAAAATTGGAAGCATCAGGAATTAAATCTAATTACTTTATTGGAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAAAATTGGAAGCATCAGGAATTAAATCTAATTACTTTATTGGAG  486

seq1  GATAAATATAACTCTTTTTCTCTACCATGTTAGGGAAAAATACCAAACAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATATAACTCTTTTTCTCTACCATGTTAGGGAAAAATACCAAACAA  536

seq1  AAATGGGAGTGGTTTTGGTCAAGGAAGTTGGAAGAGAGGTATGAGATCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAGTGGTTTTGGTCAAGGAAGTTGGAAGAGAGGTATGAGATCAA  586

seq1  TACTAGCAAGAAGTCAGACTAATGAGAAGGCGAAGCTTTAGACAGGCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGCAAGAAGTCAGACTAATGAGAAGGCGAAGCTTTAGACAGGCTTC  636

seq1  AGGCCTTCTTACCCAGAAGTGTGCTGACTTTTGGACTTGAGGGAAGCATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTCTTACCCAGAAGTGTGCTGACTTTTGGACTTGAGGGAAGCATA  686

seq1  GACTCCTAAAACCTCCAGTATTAGCCTTTGCTGACCTTTCACACAGTAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTAAAACCTCCAGTATTAGCCTTTGCTGACCTTTCACACAGTAGA  736

seq1  TCCTTTCTCCCAAGCTCCCCGGAGCCTGAGACAGCCTCAATCTTTCTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCCCAAGCTCCCCGGAGCCTGAGACAGCCTCAATCTTTCTGTT  786

seq1  AACAGAGAACTTAATTTTTGCCACCATTTATCAAAACAGTTGATTAAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGAACTTAATTTTTGCCACCATTTATCAAAACAGTTGATTAAAAA  836

seq1  ATTGTATAATTTCAAAACTTGCCTTGAACTTTAAAGCTACAAACAACTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATAATTTCAAAACTTGCCTTGAACTTTAAAGCTACAAACAACTTT  886

seq1  CATTTTGTGAAACTCCTGGGCTTTGTTTTCAAGGCTTTTTGGATTTATGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTGAAACTCCTGGGCTTTGTTTTCAAGGCTTTTTGGATTTATGT  936

seq1  TTCTTCTGGCTACAATCGCAATCAGTCACAAATAGCTTTAAGCTTCCTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGGCTACAATCGCAATCAGTCACAAATAGCTTTAAGCTTCCTTG  986

seq1  TTCTCAAGTATGCTGAATGTATGCTTGGTTGACAATTACTTTAAAGTTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGTATGCTGAATGTATGCTTGGTTGACAATTACTTTAAAGTTCT  1036

seq1  TGGTTGGGACTCTGGTAATTGGGAGTCTATTTAAGGGCAGGAATACATCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGGACTCTGGTAATTGGGAGTCTATTTAAGGGCAGGAATACATCT  1086

seq1  CTGGGGTGGCTGAGAATTC  1118
      |||||||||||||||||||
seq2  CTGGGGTGGCTGAGAATTC  1105


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