BAC Information

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BAC

Clone NameB6Ng01-245L19
Chromosome6 (Build37)
Map Location 121,064,565 - 121,247,658
singlet/doubletdoublet
Overlap geneMinpp1-ps, Pex26, Tuba8, Usp18
Upstream geneNinj2, B4galnt3, Ccdc77, Jarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793
Downstream geneSlc6a13, Slc6a12, Iqsec3, LOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-245L19.bB6Ng01-245L19.g
ACCGA054546GA054547
length1,0871,000
definitionB6Ng01-245L19.b B6Ng01-245L19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,064,565 - 121,065,658)(121,246,921 - 121,247,658)
sequence
gaattctcaaggctccattgacttagaaactcccaggatgccttggacag
gtgcagatgtgagataggaaaagcaaaaagcaagtgcagggtggcttaga
acatagttcattcttgtttgtttgtttgtttgtttgtttttcgagacagg
gtttctctgtgtagtcctggctgtcctggaactcactctgtagaccaggc
tggccttgaactcagaaatctgcctgcctctgcctcccaagtgctgggat
taaaggcgtgtgccaccacgcccggcacaaagttcattcttgaacgttct
tgaacagggacctagcagagacaaggatggcatgcttcaagtccttgcct
ctggggctggagagatgactcagttaaaaggacccaggtttggttcccag
taccatatggaggctaacagccatttgtaactttagtactagtggggctg
aagtcctttcttctggtctccagtagcatcaggcatgcacatgggacaca
gtcttacatgcaggcaaaataacccacatcatcatcaccatcatcatcac
catgtatcctttttaaaagtccttgcctttctcttctataccaaagtcct
agctttgaactagactagactgttggaagacacctaaggggtgcacaaag
agcagtgtccccatactggagacactcctgggctctgagttgatcactgg
attatctcacaagactttaacacacacacacatatacacacacacataca
tacacatatacacgcacacatacacacacacacacacacacacacacaca
cacacacacacacacacaccttttactttccaattcccaatccacaagtc
tttttaccctgctggcagaaggaaattaaaatacaacttgacaaaccaca
tgtctatgtctgcatcagatcctctcacagcacataccccgaagctgaga
aaggttttcttaaattccctggactggtgtatgccttgcacaccgggagt
tccatatagcatagtggggtaaaccagatgcaatgactagggggaaacat
ttagtgccaaagcccctggagcatctaaagcatcatc
gaattccagttagcaaatgtagaaggaaagacagaaataggaacccacca
ttggacagacaactttagtaaccacaacaccagttagatctgtgaataca
agttggaggaagaccagaattttcatagtttctaagtgtcttccccacag
atatttatacactacaaagggaaagatgttaacttcatggtagaaaggcc
aggaagcacgcagccatagaacacacgggtaccattcacttcctgaagtg
tgtatgaagagtcagtcatgcaggcacaatacactgctcctcttgccaat
catcctatttgatcctgagagaacagaacacagccccaagcaaaggacgt
acaacaaacaactgttctttatggacatccctgtgagaaactgcttagat
cactggatcactggggtgggaggaccaaccctacctgtaagctcgagtcc
tgggcggagggaaaggagaacacagaccaagcgcttccacgcacctgcct
ctgcttctgaggcgcagatacaatgcggtcagctgcctcaagctcccacc
gccttgaccttcccacaggacaggctgtctcctcaaactgggtcaaaaat
aaacctttcctcaggtcgcttttgtattttgctgcagcgcctagatgagt
aattaatatagtgttcagatcacagaggataagaaaagatacataggcaa
gtttaggatacaggagactagagaaacgctaagtgcatcctgggatcttg
aattggagtgtaggtagaatctggactagaaaggctcatcaacataaaaa
tcagtgtaatttaaatgagatcattagcttaataacactttaccaatatt
gatcttccatttttgacaattgtataatgcttatatcagcagaaactgac
cacagattgcatgaagattatttttttttacaacttttaaatcttaggct
agtttaaaatttaaggatgtgagctaagatagtttcactccttggctata

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_121064565_121065658
seq2: B6Ng01-245L19.b_43_1129

seq1  GAATTCTCAAGGCTCCATTGACTTAGAAACTCCCAGGATGCCTTGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGGCTCCATTGACTTAGAAACTCCCAGGATGCCTTGGACAG  50

seq1  GTGCAGATGTGAGATAGGAAAAGCAAAAAGCAAGTGCAGGGTGGCTTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGATGTGAGATAGGAAAAGCAAAAAGCAAGTGCAGGGTGGCTTAGA  100

seq1  ACATAGTTCATTCTTGTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTTCATTCTTGTTTGTTTGTTTGTTTGTTTGTTTTTCGAGACAGG  150

seq1  GTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGTCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGC  200

seq1  TGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGAT  250

seq1  TAAAGGCGTGTGCCACCACGCCCGGCACAAAGTTCATTCTTGAACGTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGTGCCACCACGCCCGGCACAAAGTTCATTCTTGAACGTTCT  300

seq1  TGAACAGGGACCTAGCAGAGACAAGGATGGCATGCTTCAAGTCCTTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGGACCTAGCAGAGACAAGGATGGCATGCTTCAAGTCCTTGCCT  350

seq1  CTGGGGCTGGAGAGATGACTCAGTTAAAAGGACCCAGGTTTGGTTCCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTGGAGAGATGACTCAGTTAAAAGGACCCAGGTTTGGTTCCCAG  400

seq1  TACCATATGGAGGCTAACAGCCATTTGTAACTTTAGTACTAGTGGGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATATGGAGGCTAACAGCCATTTGTAACTTTAGTACTAGTGGGGCTG  450

seq1  AAGTCCTTTCTTCTGGTCTCCAGTAGCATCAGGCATGCACATGGGACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTTCTTCTGGTCTCCAGTAGCATCAGGCATGCACATGGGACACA  500

seq1  GTCTTACATGCAGGCAAAATAACCCACATCATCATCACCATCATCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACATGCAGGCAAAATAACCCACATCATCATCACCATCATCATCAC  550

seq1  CATGTATCCTTTTTAAAAGTCCTTGCCTTTCTCTTCTATACCAAAGTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATCCTTTTTAAAAGTCCTTGCCTTTCTCTTCTATACCAAAGTCCT  600

seq1  AGCTTTGAACTAGACTAGACTGTTGGAAGACACCTAAGGGGTGCACAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTGAACTAGACTAGACTGTTGGAAGACACCTAAGGGGTGCACAAAG  650

seq1  AGCAGTGTCCCCATACTGGAGACACTCCTGGGCTCTGAGTTGATCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTCCCCATACTGGAGACACTCCTGGGCTCTGAGTTGATCACTGG  700

seq1  ATTATCTCACAAGACTTTAACACACACACACATATACACACACACATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTCACAAGACTTTAACACACACACACATATACACACACACATACA  750

seq1  TACACATATACACGCACACATACACACACACACACACACACACACACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATACACGCACACATACACACACACACACACACACACACACACA  800

seq1  CACACACACACACACACACCTTTTACTTTCCAATTCCCAATCCACAAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACCTTTTACTTTCCAATTCCCAATCCACAAGTC  850

seq1  TTTTTACCCTGCTGGCAGAAAGGAAATTAAAATACAACTTGACAAAACCA  900
      |||||||||||||||||| |||||||||||||||||||||||| ||||||
seq2  TTTTTACCCTGCTGGCAG-AAGGAAATTAAAATACAACTTGAC-AAACCA  898

seq1  CATGTCTATGTCTGCATCAGATCCTCTCACAGCACAATAACCCCGAAGCT  950
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  CATGTCTATGTCTGCATCAGATCCTCTCACAGCACA--TACCCCGAAGCT  946

seq1  GAGAAAGGTTTTCTTAAATTCACTGGACT-GTGTATGCCTTGCAACAACC  999
      ||||||||||||||||||||| ||||||| ||||||||||||| ||| | 
seq2  GAGAAAGGTTTTCTTAAATTCCCTGGACTGGTGTATGCCTTGC-ACACCG  995

seq1  GGAGTTCCATATAGCAATAGTGGGTAAAACCAAGATGCAATGACTAGGGG  1049
      ||||||||||||||| ||||||||  ||||| ||||||||||||||||||
seq2  GGAGTTCCATATAGC-ATAGTGGGGTAAACC-AGATGCAATGACTAGGGG  1043

seq1  GAAACATTAGTTGCCAAAGCCCCT-GAGCAATCTAAAGCCATCATC  1094
      ||||||||   ||||||||||||| |||| |||||||| |||||||
seq2  GAAACATTTAGTGCCAAAGCCCCTGGAGC-ATCTAAAG-CATCATC  1087

seq1: chr6_121246921_121247658
seq2: B6Ng01-245L19.g_65_802 (reverse)

seq1  ATGCACTTAGCGTTTCTCTAGTCTCCTGTATCCTAAACTTGCCTATGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTAGCGTTTCTCTAGTCTCCTGTATCCTAAACTTGCCTATGTAT  50

seq1  CTTTTCTTATCCTCTGTGATCTGAACACTATATTAATTACTCATCTAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTATCCTCTGTGATCTGAACACTATATTAATTACTCATCTAGGC  100

seq1  GCTGCAGCAAAATACAAAAGCGACCTGAGGAAAGGTTTATTTTTGACCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGCAAAATACAAAAGCGACCTGAGGAAAGGTTTATTTTTGACCCA  150

seq1  GTTTGAGGAGACAGCCTGTCCTGTGGGAAGGTCAAGGCGGTGGGAGCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGAGACAGCCTGTCCTGTGGGAAGGTCAAGGCGGTGGGAGCTTG  200

seq1  AGGCAGCTGACCGCATTGTATCTGCGCCTCAGAAGCAGAGGCAGGTGCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTGACCGCATTGTATCTGCGCCTCAGAAGCAGAGGCAGGTGCGT  250

seq1  GGAAGCGCTTGGTCTGTGTTCTCCTTTCCCTCCGCCCAGGACTCGAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGCTTGGTCTGTGTTCTCCTTTCCCTCCGCCCAGGACTCGAGCTT  300

seq1  ACAGGTAGGGTTGGTCCTCCCACCCCAGTGATCCAGTGATCTAAGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGGGTTGGTCCTCCCACCCCAGTGATCCAGTGATCTAAGCAGTT  350

seq1  TCTCACAGGGATGTCCATAAAGAACAGTTGTTTGTTGTACGTCCTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGGGATGTCCATAAAGAACAGTTGTTTGTTGTACGTCCTTTGCT  400

seq1  TGGGGCTGTGTTCTGTTCTCTCAGGATCAAATAGGATGATTGGCAAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGTGTTCTGTTCTCTCAGGATCAAATAGGATGATTGGCAAGAGG  450

seq1  AGCAGTGTATTGTGCCTGCATGACTGACTCTTCATACACACTTCAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTATTGTGCCTGCATGACTGACTCTTCATACACACTTCAGGAAG  500

seq1  TGAATGGTACCCGTGTGTTCTATGGCTGCGTGCTTCCTGGCCTTTCTACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGTACCCGTGTGTTCTATGGCTGCGTGCTTCCTGGCCTTTCTACC  550

seq1  ATGAAGTTAACATCTTTCCCTTTGTAGTGTATAAATATCTGTGGGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTTAACATCTTTCCCTTTGTAGTGTATAAATATCTGTGGGGAAGA  600

seq1  CACTTAGAAACTATGAAAATTCTGGTCTTCCTCCAACTTGTATTCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGAAACTATGAAAATTCTGGTCTTCCTCCAACTTGTATTCACAGA  650

seq1  TCTAACTGGTGTTGTGGTTACTAAAGTTGTCTGTCCAATGGTGGGTTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTGGTGTTGTGGTTACTAAAGTTGTCTGTCCAATGGTGGGTTCCT  700

seq1  ATTTCTGTCTTTCCTTCTACATTTGCTAACTGGAATTC  738
      ||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTCTTTCCTTCTACATTTGCTAACTGGAATTC  738