BAC Information

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BAC

Clone NameB6Ng01-247H23
Chromosome6 (Build37)
Map Location 76,372,384 - 76,467,713
singlet/doubletdoublet
Overlap geneLOC668153, EG668155
Upstream geneEG668145, EG546907, LOC100042952
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-247H23.bB6Ng01-247H23.g
ACCGA055818GA055819
length1,0051,173
definitionB6Ng01-247H23.b B6Ng01-247H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,467,036 - 76,467,713)(76,372,384 - 76,373,561)
sequence
gaattctgctttcatctttaataaatggtaagtattatatatcaaaatat
tgttctaaaacatatttggttatataaccacttcatatacttgtagaact
gtggtcatatacattttccctagtcaaaatgggtcacaagtagaaaatgt
tgaaaagctttgttgcatttgtcacagaaagttatattagtagttacaca
tcataaggatttctggaaaatcagaaaccacctgaaaatgtgaaacctta
tttcttaatccatgggcaacaaaaaaccaaactgaacataaccaatcaca
aggattgcactttggttttcaagtgcaagaaaaaaatgtgtggtgcagct
aaagtgcttataaagagatatttatcactctaagggttaatggtagaaaa
gagatatctcaaaaaaattctttaagctcatattatagaaagtgagagaa
gagcatattttatcataaaaaactggaataaaacaaacaaaatatgaata
aaataaaacagaaaagaaacattgataaaatttaatgcagataaaattgt
attgtttctttcaaaggagtaatataattgatgaatattaagacaaattg
attaataagaagtaaaaaaaatcagattcgtggagggaatatgacctcag
aacccagagcccatgaatcctctgcttcaggcctttgaaaagggttaaca
gcatccatgatgtcaacccagtagatgccagtaccaacccccatattctt
gacaaggaaaatttgtccatagacattgctaatatctcttgaggcaaaac
catccctagttgaaaactaactctacaaagtagagtagataaggttatat
tttaaacaagattttgagaatacattcagataaaaattcattgaaaaaaa
ttactgaatgtattcaagaagaaaatcaacatagactttcaacaatttaa
atatgatgtaacttgtctgaaatttattctgtaataaatggaagataaaa
aactg

gaattcaattctcttttgtccaacatatttcactcagtttcctgatttaa
ataatcaagaagtgtttctaattcatgtatagaaaaaatgaattatcaaa
taaattctggctaagagcctttcattttaaagaaatatccagaagacata
aaataaggcagaacaacaaagagttatatatttccacaatttgaatttat
actagaaaatatctcatatgcattaagaatctagatgtagattttagcta
ttctctactttggtcaaaacagtttcttcttgcactggttatttgttaat
ccagattcttctaactagtcaaactattgagtatatatatttgagtgctt
agctgtggatggatcatctctacccacctctcaccatccaaggatcaggg
aacttcacagacagacaaagcataagagctggcagagtgactgaaatggt
cctgagatgctgccttctagaaatggtagagctgttgcatgcaccaactc
atagtaactatagttacctgcacaagatcaaatcaattaaatttctgcat
gaatgaaggaagggctcctaaccctcccttcacaccattattagaagaaa
tattagttattgatggttacgaagggaggaaaaaaatcattcttctttgt
ggatggatgctctgatggtatgcctattacgctgtggcttgaggacatat
ctacttactttgtggttatattggcatagtgtctgtcctcaaggttatta
acaacaaatactgaaaaaacatgaagcaggatgggagatggataagtgta
ctagcagatgttgaagggagattgtgatagatgaatatgatcaatacaga
ttgtataaatgtatgggaacattgaaataaatatatggataaaaatacca
acatggctttttctcttcttttactgtcttcctaagtgaatgttatgcca
cacaaatgcaacaatagaacaacacttcaggtgtatcaatgtaggtaatc
ttattacatataaaatgagaaacacaaagtatatactcttttcattttat
tatttactctacatcagccataacatcataaaacgtacaaccatttcgaa
tctgtggccagttgtgaacgcatcaatgttcatgctccaatatttctatg
gaaattcccacccttaaaactct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_76467036_76467713
seq2: B6Ng01-247H23.b_50_727 (reverse)

seq1  GAAGCAGAGGATTCATGGGCTCTGGGTTCTGAGGTCATATTCCCTCCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGAGGATTCATGGGCTCTGGGTTCTGAGGTCATATTCCCTCCACG  50

seq1  AATCTGATTTTTTTTACTTCTTATTAATCAATTTGTCTTAATATTCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATTTTTTTTACTTCTTATTAATCAATTTGTCTTAATATTCATCA  100

seq1  ATTATATTACTCCTTTGAAAGAAACAATACAATTTTATCTGCATTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTACTCCTTTGAAAGAAACAATACAATTTTATCTGCATTAAATT  150

seq1  TTATCAATGTTTCTTTTCTGTTTTATTTTATTCATATTTTGTTTGTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATGTTTCTTTTCTGTTTTATTTTATTCATATTTTGTTTGTTTTA  200

seq1  TTCCAGTTTTTTATGATAAAATATGCTCTTCTCTCACTTTCTATAATATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTTTTTTATGATAAAATATGCTCTTCTCTCACTTTCTATAATATG  250

seq1  AGCTTAAAGAATTTTTTTGAGATATCTCTTTTCTACCATTAACCCTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAAAGAATTTTTTTGAGATATCTCTTTTCTACCATTAACCCTTAGA  300

seq1  GTGATAAATATCTCTTTATAAGCACTTTAGCTGCACCACACATTTTTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAATATCTCTTTATAAGCACTTTAGCTGCACCACACATTTTTTTC  350

seq1  TTGCACTTGAAAACCAAAGTGCAATCCTTGTGATTGGTTATGTTCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTTGAAAACCAAAGTGCAATCCTTGTGATTGGTTATGTTCAGTTT  400

seq1  GGTTTTTTGTTGCCCATGGATTAAGAAATAAGGTTTCACATTTTCAGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTGCCCATGGATTAAGAAATAAGGTTTCACATTTTCAGGTG  450

seq1  GTTTCTGATTTTCCAGAAATCCTTATGATGTGTAACTACTAATATAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGATTTTCCAGAAATCCTTATGATGTGTAACTACTAATATAACTT  500

seq1  TCTGTGACAAATGCAACAAAGCTTTTCAACATTTTCTACTTGTGACCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACAAATGCAACAAAGCTTTTCAACATTTTCTACTTGTGACCCAT  550

seq1  TTTGACTAGGGAAAATGTATATGACCACAGTTCTACAAGTATATGAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAGGGAAAATGTATATGACCACAGTTCTACAAGTATATGAAGTG  600

seq1  GTTATATAACCAAATATGTTTTAGAACAATATTTTGATATATAATACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATAACCAAATATGTTTTAGAACAATATTTTGATATATAATACTTA  650

seq1  CCATTTATTAAAGATGAAAGCAGAATTC  678
      ||||||||||||||||||||||||||||
seq2  CCATTTATTAAAGATGAAAGCAGAATTC  678


seq1: chr6_76372384_76373561
seq2: B6Ng01-247H23.g_68_1240

seq1  GAATTCAATTCTCTTTTGTCCAACATATTTCACTCAGTTTCCTGATTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTCTTTTGTCCAACATATTTCACTCAGTTTCCTGATTTAA  50

seq1  ATAATCAAGAAGTGTTTCTAATTCATGTATAGAAAAAATGAATTATCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAAGAAGTGTTTCTAATTCATGTATAGAAAAAATGAATTATCAAA  100

seq1  TAAATTCTGGCTAAGAGCCTTTCATTTTAAAGAAATATCCAGAAGACATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTGGCTAAGAGCCTTTCATTTTAAAGAAATATCCAGAAGACATA  150

seq1  AAATAAGGCAGAACAACAAAGAGTTATATATTTCCACAATTTGAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGCAGAACAACAAAGAGTTATATATTTCCACAATTTGAATTTAT  200

seq1  ACTAGAAAATATCTCATATGCATTAAGAATCTAGATGTAGATTTTAGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAATATCTCATATGCATTAAGAATCTAGATGTAGATTTTAGCTA  250

seq1  TTCTCTACTTTGGTCAAAACAGTTTCTTCTTGCACTGGTTATTTGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTACTTTGGTCAAAACAGTTTCTTCTTGCACTGGTTATTTGTTAAT  300

seq1  CCAGATTCTTCTAACTAGTCAAACTATTGAGTATATATATTTGAGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCTTCTAACTAGTCAAACTATTGAGTATATATATTTGAGTGCTT  350

seq1  AGCTGTGGATGGATCATCTCTACCCACCTCTCACCATCCAAGGATCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGATGGATCATCTCTACCCACCTCTCACCATCCAAGGATCAGGG  400

seq1  AACTTCACAGACAGACAAAGCATAAGAGCTGGCAGAGTGACTGAAATGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCACAGACAGACAAAGCATAAGAGCTGGCAGAGTGACTGAAATGGT  450

seq1  CCTGAGATGCTGCCTTCTAGAAATGGTAGAGCTGTTGCATGCACCAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGATGCTGCCTTCTAGAAATGGTAGAGCTGTTGCATGCACCAACTC  500

seq1  ATAGTAACTATAGTTACCTGCACAAGATCAAATCAATTAAATTTCTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTATAGTTACCTGCACAAGATCAAATCAATTAAATTTCTGCAT  550

seq1  GAATGAAGGAAGGGCTCCTAACCCTCCCTTCACACCATTATTAGAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAAGGAAGGGCTCCTAACCCTCCCTTCACACCATTATTAGAAGAAA  600

seq1  TATTAGTTATTGATGGTTACGAAGGGAGGAAAAAAATCATTCTTCTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGTTATTGATGGTTACGAAGGGAGGAAAAAAATCATTCTTCTTTGT  650

seq1  GGATGGATGCTCTGATGGTATGCCTATTACGCTGTGGCTTGAGGACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATGCTCTGATGGTATGCCTATTACGCTGTGGCTTGAGGACATAT  700

seq1  CTACTTACTTTGTGGTTATATTGGCATAGTGTCTGTCCTCAAGGTTATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACTTTGTGGTTATATTGGCATAGTGTCTGTCCTCAAGGTTATTA  750

seq1  ACAACAAATACTGAAAAAACATGAAGCAGGATGGGAGATGGATAAGTGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAATACTGAAAAAACATGAAGCAGGATGGGAGATGGATAAGTGTA  800

seq1  CTAGCAGATGTTGAAGGGAGATTGTGATAGATGAATATGATCAATACAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAGATGTTGAAGGGAGATTGTGATAGATGAATATGATCAATACAGA  850

seq1  TTGTATAAATGTAT-GGAACATTGAAAATAAATATATGGATAAAAATACC  899
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  TTGTATAAATGTATGGGAACATTG-AAATAAATATATGGATAAAAATACC  899

seq1  AACATGGCTTTTTCTCTTCTTTTACTGTCTTCCTAAGTGAATGTTATGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTTTTTCTCTTCTTTTACTGTCTTCCTAAGTGAATGTTATGCC  949

seq1  ACACAAATGCAACAATAGAACAACACTTCAGGTGTATCAATGTAGGTAAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGCAACAATAGAACAACACTTCAGGTGTATCAATGTAGGTAAT  999

seq1  C-TATTACATATAAAAATGAGAAAACACAAAGTATATACTCTTTTCATTT  1048
      | |||||||||| |||||||| ||||||||||||||||||||||||||||
seq2  CTTATTACATAT-AAAATGAG-AAACACAAAGTATATACTCTTTTCATTT  1047

seq1  TAATTAATTTTACTCTACATTCAG-CATAACATCAATAAAAACGTACAAA  1097
      | ||||  ||||||||||| |||| ||||||||||   ||||||||| ||
seq2  T-ATTA--TTTACTCTACA-TCAGCCATAACATCA--TAAAACGTAC-AA  1090

seq1  CCATTTTCCAAATCTGT-GCCAGTTGTGACAGCAATCAATGTTCATGCTC  1146
      ||||||  | ||||||| |||||||||||  || ||||||||||||||||
seq2  CCATTT--CGAATCTGTGGCCAGTTGTGAACGC-ATCAATGTTCATGCTC  1137

seq1  CAATTATTCTATGG--ATTCC--ACCTTAAAAATCT  1178
      ||||  ||||||||  |||||   |||||||| |||
seq2  CAATATTTCTATGGAAATTCCCACCCTTAAAACTCT  1173


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