BAC Information

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BAC

Clone NameB6Ng01-249E12
Chromosome6 (Build37)
Map Location 34,170,946 - 34,300,779
singlet/doubletdoublet
Overlap geneAkr1b3
Upstream geneGm1401, Exoc4, Lrguk, Slc35b4
Downstream geneAkr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249E12.bB6Ng01-249E12.g
ACCGA057143GA057144
length6531,122
definitionB6Ng01-249E12.b B6Ng01-249E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,300,127 - 34,300,779)(34,170,946 - 34,172,064)
sequence
gaattcagctcaggggttaagtttgtcctgcacccacattagaggactcc
agttccaggggatccaaatgctctcctggccccttaggcatcttcactct
tgtatgcatatccacagaagcacacataattacaaatcaaataaatattt
taagtcttcccggattgccattccatagcataaccgtgtacacttaggtg
acctttcccctagtgatttggcgtctcatttatgttttcccgagattact
atgctgttgtcacagctaccacagtttgcttatccatttccttctggaag
gctgtagagatttcttccttgttgatttttctctcacctcaccgtgattc
agcaatttaaccatagctgaatattgaaatgctagttaatgtaagcggga
acttattcacgggcggttagaaaataaggggaactttttggcctgttgat
tgtttccagaggaaaaaggaacagcagagccttggctgtaaggattgcca
ttcaggattcagttcgagaggcattggaacagttctgaccggactggagc
ccgctataactctaacccagggaaaatgacataggctttgccatgatgcg
acatcattttgggttgactcagcaagatattatagtgtgtgtgtgtgtgt
gtg
gaattcctgtgagtgagcagagtggagaaagagtctccataccctagcag
acaggccaagatgtttacatgggtcaaaaatagcctctgtggttggatgt
tttatttgtcaaaacatcttgtggctataagtaaaacagtctaggaatta
ttgattgggaacaaattaaaacaaaggttaaaagagttgaactaccttcc
aagaactctaaagttgaaggaattctctaaaaatgcaatattgttttaaa
aacaattccactatttggtgtaattagtagtgtgcaagacttttatatca
ttatttgcactcacattttaaaaaaagatttgtttatttttatgtgagta
cactgtcactattttcagacacactagaagagggcatcagatctcgttac
cgatggttgtgagccaccatatggttgctgggagttgaactcagcacctc
tggataagctgtcagtgctcttaaccactgagccatctctccagtccccc
acattaaattttttttatttttttatctattatccagtatcttaagggga
tgacttacggctggggttgagtttggaaaaactagcctggggatcagtag
ttctggttttaagagaattttccacccgtcttggtcaaatttaaacattt
ccaagccttctttttctgaaattatccatctcacctggttgtttaaagga
gttgatgataggatgcctgagaaaatggtttataaaccgtgaagatccct
aatctcctctgaggctgttagcaatgatgttcagcaatggaaatcaaaat
tgtgacaagtcagaaatggtctaatcgccagggataaaactcactaagca
aattatgctacatgtgccgggacagaactatcagcaaatatgaaaaagat
gacaacatctatctattgacatgggacagttggcctagatgcttcatggg
caaaatgtatatttttatacaataaaacatgatagtgtatacctaaaaga
tgtctggatggatttgaataaaatggtgcctcatctagaataatattgtt
atactaatgaaatatatacagcagggaaaggtggtgtcttagaatttaaa
tgcacctgtttttcaaaaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_34300127_34300779
seq2: B6Ng01-249E12.b_44_696 (reverse)

seq1  CACACACACACACACACACTATAATATCTTGCTGAGTCAACCCAAAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACTATAATATCTTGCTGAGTCAACCCAAAATGA  50

seq1  TGTCGCATCATGGCAAAGCCTATGTCATTTTCCCTGGGTTAGAGTTATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCATCATGGCAAAGCCTATGTCATTTTCCCTGGGTTAGAGTTATAG  100

seq1  CGGGCTCCAGTCCGGTCAGAACTGTTCCAATGCCTCTCGAACTGAATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTCCAGTCCGGTCAGAACTGTTCCAATGCCTCTCGAACTGAATCCT  150

seq1  GAATGGCAATCCTTACAGCCAAGGCTCTGCTGTTCCTTTTTCCTCTGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCAATCCTTACAGCCAAGGCTCTGCTGTTCCTTTTTCCTCTGGAA  200

seq1  ACAATCAACAGGCCAAAAAGTTCCCCTTATTTTCTAACCGCCCGTGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAACAGGCCAAAAAGTTCCCCTTATTTTCTAACCGCCCGTGAATA  250

seq1  AGTTCCCGCTTACATTAACTAGCATTTCAATATTCAGCTATGGTTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCGCTTACATTAACTAGCATTTCAATATTCAGCTATGGTTAAATT  300

seq1  GCTGAATCACGGTGAGGTGAGAGAAAAATCAACAAGGAAGAAATCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAATCACGGTGAGGTGAGAGAAAAATCAACAAGGAAGAAATCTCTAC  350

seq1  AGCCTTCCAGAAGGAAATGGATAAGCAAACTGTGGTAGCTGTGACAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTCCAGAAGGAAATGGATAAGCAAACTGTGGTAGCTGTGACAACAG  400

seq1  CATAGTAATCTCGGGAAAACATAAATGAGACGCCAAATCACTAGGGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTAATCTCGGGAAAACATAAATGAGACGCCAAATCACTAGGGGAAA  450

seq1  GGTCACCTAAGTGTACACGGTTATGCTATGGAATGGCAATCCGGGAAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTAAGTGTACACGGTTATGCTATGGAATGGCAATCCGGGAAGAC  500

seq1  TTAAAATATTTATTTGATTTGTAATTATGTGTGCTTCTGTGGATATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATTTATTTGATTTGTAATTATGTGTGCTTCTGTGGATATGCAT  550

seq1  ACAAGAGTGAAGATGCCTAAGGGGCCAGGAGAGCATTTGGATCCCCTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGTGAAGATGCCTAAGGGGCCAGGAGAGCATTTGGATCCCCTGGA  600

seq1  ACTGGAGTCCTCTAATGTGGGTGCAGGACAAACTTAACCCCTGAGCTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTCCTCTAATGTGGGTGCAGGACAAACTTAACCCCTGAGCTGAA  650

seq1  TTC  653
      |||
seq2  TTC  653

seq1: chr6_34170946_34172064
seq2: B6Ng01-249E12.g_66_1187

seq1  GAATTCCTGTGAGTGAGCAGAGTGGAGAAAGAGTCTCCATACCCTAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGAGTGAGCAGAGTGGAGAAAGAGTCTCCATACCCTAGCAG  50

seq1  ACAGGCCAAGATGTTTACATGGGTCAAAAATAGCCTCTGTGGTTGGATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCAAGATGTTTACATGGGTCAAAAATAGCCTCTGTGGTTGGATGT  100

seq1  TTTATTTGTCAAAACATCTTGTGGCTATAAGTAAAACAGTCTAGGAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGTCAAAACATCTTGTGGCTATAAGTAAAACAGTCTAGGAATTA  150

seq1  TTGATTGGGAACAAATTAAAACAAAGGTTAAAAGAGTTGAACTACCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGGGAACAAATTAAAACAAAGGTTAAAAGAGTTGAACTACCTTCC  200

seq1  AAGAACTCTAAAGTTGAAGGAATTCTCTAAAAATGCAATATTGTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTCTAAAGTTGAAGGAATTCTCTAAAAATGCAATATTGTTTTAAA  250

seq1  AACAATTCCACTATTTGGTGTAATTAGTAGTGTGCAAGACTTTTATATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTCCACTATTTGGTGTAATTAGTAGTGTGCAAGACTTTTATATCA  300

seq1  TTATTTGCACTCACATTTTAAAAAAAGATTTGTTTATTTTTATGTGAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGCACTCACATTTTAAAAAAAGATTTGTTTATTTTTATGTGAGTA  350

seq1  CACTGTCACTATTTTCAGACACACTAGAAGAGGGCATCAGATCTCGTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCACTATTTTCAGACACACTAGAAGAGGGCATCAGATCTCGTTAC  400

seq1  CGATGGTTGTGAGCCACCATATGGTTGCTGGGAGTTGAACTCAGCACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGTTGTGAGCCACCATATGGTTGCTGGGAGTTGAACTCAGCACCTC  450

seq1  TGGATAAGCTGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAGCTGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGTCCCCC  500

seq1  ACATTAAATTTTTTTTATTTTTTTATCTATTATCCAGTATCTTAAGGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAAATTTTTTTTATTTTTTTATCTATTATCCAGTATCTTAAGGGGA  550

seq1  TGACTTACGGCTGGGGTTGAGTTTGGAAAAACTAGCCTGGGGATCAGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACGGCTGGGGTTGAGTTTGGAAAAACTAGCCTGGGGATCAGTAG  600

seq1  TTCTGGTTTTAAGAGAATTTTCCACCCGTCTTGGTCAAATTTAAACATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGTTTTAAGAGAATTTTCCACCCGTCTTGGTCAAATTTAAACATTT  650

seq1  CCAAGCCTTCTTTTTCTGAAATTATCCATCTCACCTGGTTGTTTAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTTCTTTTTCTGAAATTATCCATCTCACCTGGTTGTTTAAAGGA  700

seq1  GTTGATGATAGGATGCCTGAGAAAATGGTTTATAAACCGTGAAGATCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGATAGGATGCCTGAGAAAATGGTTTATAAACCGTGAAGATCCCT  750

seq1  AATCTCCTCTGAGGCTGTTAGCAATGATGTTCAGCAATGGAAATCAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTCTGAGGCTGTTAGCAATGATGTTCAGCAATGGAAATCAAAAT  800

seq1  TGTGACAAGTCAGAAATGGTCTAATCGCCAGGGATAAAACTCACTAAGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAGTCAGAAATGGTCTAATCGCCAGGGATAAAACTCACTAAGCA  850

seq1  AATTATGCTACATGTGCC-GGACAGAACTATCAGCAAATATGAAAAAGAT  899
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATTATGCTACATGTGCCGGGACAGAACTATCAGCAAATATGAAAAAGAT  900

seq1  GACAACATCTATCTATTGACAT-GGACAGTTGGCCTAGATGCTTCATGGG  948
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACAACATCTATCTATTGACATGGGACAGTTGGCCTAGATGCTTCATGGG  950

seq1  CAAAATGTATATTTTTATACAATAAAACAATGATAGTGTATACCTAAAAA  998
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  CAAAATGTATATTTTTATACAATAAAAC-ATGATAGTGTATACCT-AAAA  998

seq1  GATGTCTGGATGGATTTGAATAAAAT-GTGCCTCATTCTAGAATAATA-T  1046
      |||||||||||||||||||||||||| |||||||| |||||||||||| |
seq2  GATGTCTGGATGGATTTGAATAAAATGGTGCCTCA-TCTAGAATAATATT  1047

seq1  GTATTACTAATGAAATATATACAGCAGGGAAAG--TGTGTCTTAGAATTT  1094
      ||  |||||||||||||||||||||||||||||   ||||||||||||||
seq2  GTTATACTAATGAAATATATACAGCAGGGAAAGGTGGTGTCTTAGAATTT  1097

seq1  AAATGCACCTGTTTTTCAAAAAGTA  1119
      |||||||||||||||||||||||||
seq2  AAATGCACCTGTTTTTCAAAAAGTA  1122