BAC Information

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BAC

Clone NameB6Ng01-249L03
Chromosome6 (Build37)
Map Location 141,725,309 - 141,726,540
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664875, Pde3a, Slco1c1, Slco1b2, EG435927
Downstream geneSlco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061, Recql, Golt1b, B230216G23Rik, Gys2, Ldhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249L03.bB6Ng01-249L03.g
ACCGA057445GA057446
length1,2151,211
definitionB6Ng01-249L03.b B6Ng01-249L03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcttcatgcacacaaagcattcgcagcacctcagcaccagcca
ataatgtacattcattccccaaactcctgccaactccccaaggtttatat
agctcttgtacccctaataaaggatatctatttcattgaaaaccatcttt
gcaaagcctagtgttttcctcctgaccctcatgctgactgagatccaatg
gaacacacctgtccaactatacatcgttgccttgattccagcttagatac
cctgagacctgaagcagaacatatggtggcagctggtttccagatggctg
cgacagggatttcttgtttgaacaatgaaaggtgagtggcccctgtcttc
agcattagcccaaaggctgaagtctcaacatactgaggggtggcagactc
ctttttccttctttgatttggtttatgccatggtattcagttcaaacata
ttgaagggccaattgaagtcttctggccaaagcattctctgatattggca
gtagttccctaaaccactgtgcctaaccctgatagcctgcccagtagttt
gcaaaaatctcctatagtttttctccttaaaaaaaaaaaaaatcacacag
tgaccaataaataccacctagcatggtcactaagaactcttaaaatttgt
ctgcaggctaatggtttggggctattatgtaattcccctgacagcagtaa
ggctgctggatagttcttttttggaacatatgtctccttcccttttttat
tatagggaatcccccatcacataaaacaaaacaaaacaaacaagcaaaca
acaaacaaatctcctcagattaggaaaatatgggtctttttaagtcaccc
atgaaactcaccaaaatgccacatggacctggagtcccatctgcttcccc
tccaatcacccaacaactctgcactctgcaggactccactacaaaggagt
agacatacccttattgccaagtcagggcttcttttacacattactccact
ggccagcaaagctgtactcttcacaactctgcccggaatgaatgatgatg
atataaataataataaatggagaatatcacaaaccctgacttcttccact
atctaaagcaagaaaaatacaatcacctcccatctattccttgcaattcc
ttactgctgaatcctctggcagtgtctcaatccaggcacttcagtgatgt
ccacctcattagggc
gaattcttcctttatctttgctgctaacatggtgttttaagtggcattct
gaattctctaatacactgcttatcaagagctaatcagttttatgattacc
ttgagtcagagggcctggcaaacctgtatgggatcttatgtatattatat
tcagtggacgacttctattcttgatcatttgttgtagccgaataaacagt
gaagtcaatcaagaatcatcctgaataagttcagcagtctctatggtaaa
acaaccctctctgcatatgagagtcagttactatatgaagagactcttga
aaatctgataccaccataaatattacatataattctgattttttaaccga
tttatagggattctcaaataacttatttacatcttctactttatattcta
cctttcctgatttattaacacagtgtaaaatgtaggggctccagaaattg
gagttcttttatcatacaaggaagaatcaaattagttcttttaatgaact
gaagtcacttgcttttagggtatttgttgctagtctctcccaagaaatta
ctacacgttatttgccaatgttcatcttgtgtctataacgaggcaatttt
agcattagtaaaagttaccacgatttcagctagattcattctagctaatt
atcaaagtctaattttcattctagtatcaattcagaaacctcttctacgt
aggtttttaagttcttactgtttgtgtgctaaaagtatccattacaagat
ataatcttccctctgcataagaattcctagaagggaaatgagtagaagga
aagataactaagatccaggccatctttggattaatacaatctagatgtgt
atcctgtaatttcttttctaccaaagctaactctttctcagcctcaggct
atttaaatctaccaccttgttagatttgaaaatacattgatagctcttga
gtagccaagcccaattgcaagcctcagctagttaatccctcctggtagct
tctgaataatcattcaaagttcgtaattggtttcttatgatttgtacatt
ttgtgcttaaacttctgttagacttatttctatatctagaatatttcaac
gaattcctctcttttgtattttttcatggtcaatttatatctcagaagga
agttatttaattttaaccttatttaacttctttccgacatactatactcg
tgagaactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_141725309_141726540
seq2: B6Ng01-249L03.b_46_1260

seq1  GAATTCTTCTTCATGCACACAAAGCATTCGCAGCACCTCAGCACCAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTCATGCACACAAAGCATTCGCAGCACCTCAGCACCAGCCA  50

seq1  ATAATGTACATTCATTCCCCAAACTCCTGCCAACTCCCCAAGGTTTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTACATTCATTCCCCAAACTCCTGCCAACTCCCCAAGGTTTATAT  100

seq1  AGCTCTTGTACCCCTAATAAAGGATATCTATTTCATTGAAAACCATCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGTACCCCTAATAAAGGATATCTATTTCATTGAAAACCATCTTT  150

seq1  GCAAAGCCTAGTGTTTTCCTCCTGACCCTCATGCTGACTGAGATCCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCCTAGTGTTTTCCTCCTGACCCTCATGCTGACTGAGATCCAATG  200

seq1  GAACACACCTGTCCAACTATACATCGTTGCCTTGATTCCAGCTTAGATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACCTGTCCAACTATACATCGTTGCCTTGATTCCAGCTTAGATAC  250

seq1  CCTGAGACCTGAAGCAGAACATATGGTGGCAGCTGGTTTCCAGATGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACCTGAAGCAGAACATATGGTGGCAGCTGGTTTCCAGATGGCTG  300

seq1  CGACAGGGATTTCTTGTTTGAACAATGAAAGGTGAGTGGCCCCTGTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGGGATTTCTTGTTTGAACAATGAAAGGTGAGTGGCCCCTGTCTTC  350

seq1  AGCATTAGCCCAAAGGCTGAAGTCTCAACATACTGAGGGGTGGCAGACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTAGCCCAAAGGCTGAAGTCTCAACATACTGAGGGGTGGCAGACTC  400

seq1  CTTTTTCCTTCTTTGATTTGGTTTATGCCATGGTATTCAGTTCAAACATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCTTCTTTGATTTGGTTTATGCCATGGTATTCAGTTCAAACATA  450

seq1  TTGAAAGGCCAATTGAAGTCTTCTGGCCAAAGCATTCTCTGATATTGGCA  500
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGGCCAATTGAAGTCTTCTGGCCAAAGCATTCTCTGATATTGGCA  500

seq1  GTAGTTCCCTAAACCACTGTGCCTAACCCTGATAGCCTGCCCAGTAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTCCCTAAACCACTGTGCCTAACCCTGATAGCCTGCCCAGTAGTTT  550

seq1  GCAAAAATCTCCTATAGTTTTTCTCCTTAAAAAAAAAAAAAATCACACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATCTCCTATAGTTTTTCTCCTTAAAAAAAAAAAAAATCACACAG  600

seq1  TGACCAATAAATACCACCTAGCATGGTCACTAAGAACTCTTAAAATTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAATAAATACCACCTAGCATGGTCACTAAGAACTCTTAAAATTTGT  650

seq1  CTGCAGGCTAATGGTTTGGGGCTATTATGTAATTCCCCTGACAGCAGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGGCTAATGGTTTGGGGCTATTATGTAATTCCCCTGACAGCAGTAA  700

seq1  GGCTGCTGGATAGTTCTTTTTTGGAACATATGTCTCCTTCCCTTTTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCTGGATAGTTCTTTTTTGGAACATATGTCTCCTTCCCTTTTTTAT  750

seq1  TATAGGGAATCCCCCATCACATAAAACAAAACAAAACAAACAAGCAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGAATCCCCCATCACATAAAACAAAACAAAACAAACAAGCAAACA  800

seq1  ACAAACAAATCTCCTCAGATTAGGAAAATATGGGTCTTTTTAAGTCACCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAATCTCCTCAGATTAGGAAAATATGGGTCTTTTTAAGTCACCC  850

seq1  ATGAAACTCACCAAAATGCCACATGGACCTGGAGTCCCATCTGCTTCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACTCACCAAAATGCCACATGGACCTGGAGTCCCATCTGCTTCCCC  900

seq1  TCCAATCACCCAACAACTCTGCACTCTGCAGGACTCCACTACAAAGGAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCACCCAACAACTCTGCACTCTGCAGGACTCCACTACAAAGGAGT  950

seq1  AGACATA-CCTTATTGCCAAGTCAGGGCTTCTTTTACACATTACTCCACT  999
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACCCTTATTGCCAAGTCAGGGCTTCTTTTACACATTACTCCACT  1000

seq1  GGCCAGCAAAGCTGTACTCTTCACAACTCTGCCCGGAATGAATGAATGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||     |
seq2  GGCCAGCAAAGCTGTACTCTTCACAACTCTGCCCGGAATGAATG-----A  1045

seq1  TGAATAAATAAATAAATAAATAAATGGAAGAAATATCACAAAACCCCTTG  1099
      |||  | ||||||||   ||||||||||   |||||||||||   || ||
seq2  TGATGATATAAATAA--TAATAAATGGA--GAATATCACAAA---CCCTG  1088

seq1  ACTTCTTCCACTAATCCTAAAGCAGGAAAAATACAAATCAACCTCCCATC  1149
      |||||||||||||   |||||||| ||||||||| |||| ||||||||||
seq2  ACTTCTTCCACTA--TCTAAAGCAAGAAAAATAC-AATC-ACCTCCCATC  1134

seq1  TATCTCTGCCATTTCCTCTACTGCTGA---CTCTGCCAGTAGTCTACAAT  1196
      |||  ||  || ||||| |||||||||   ||||| |||| |||| ||||
seq2  TATTCCTTGCAATTCCT-TACTGCTGAATCCTCTGGCAGT-GTCT-CAAT  1181

seq1  TCAGGCATTCCCAGTTGATGTCCACTCCATTAGGGC  1232
       |||||| |  ||| ||||||||||  |||||||||
seq2  CCAGGCACT-TCAG-TGATGTCCACCTCATTAGGGC  1215